Wall clock time and date at job start Tue Mar 31 2020 05:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00187 * 2 1 4 4 H 1.48492 * 109.46854 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47025 * 300.00392 * 3 2 1 6 6 H 1.48498 * 109.46692 * 60.00365 * 3 2 1 7 7 C 1.37875 * 119.99408 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99491 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00542 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47242 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47127 * 180.02562 * 10 9 7 12 12 N 1.46898 * 109.47006 * 179.97438 * 11 10 9 13 13 C 1.46903 * 110.99673 * 179.97438 * 12 11 10 14 14 H 1.08999 * 109.46807 * 45.00301 * 13 12 11 15 15 F 1.39901 * 109.47474 * 284.99906 * 13 12 11 16 16 O 1.42910 * 109.46887 * 165.00172 * 13 12 11 17 17 C 1.35931 * 116.99941 * 60.00255 * 16 13 12 18 18 C 1.39164 * 120.45538 * 179.72320 * 17 16 13 19 19 C 1.38495 * 118.38762 * 179.78066 * 18 17 16 20 20 C 1.38414 * 119.20924 * 0.51660 * 19 18 17 21 21 Cl 1.73600 * 119.57407 * 179.70190 * 20 19 18 22 22 N 1.31926 * 120.84968 * 359.71909 * 20 19 18 23 23 C 1.31878 * 121.76662 * 0.02562 * 22 20 19 24 24 H 0.96999 * 119.99910 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47390 * 60.00123 * 9 7 2 26 26 H 1.09001 * 109.46948 * 299.99764 * 9 7 2 27 27 H 1.09001 * 109.47502 * 60.00161 * 10 9 7 28 28 H 1.09001 * 109.47289 * 299.99957 * 10 9 7 29 29 H 1.09001 * 109.47002 * 299.99574 * 11 10 9 30 30 H 1.08993 * 109.46955 * 60.00011 * 11 10 9 31 31 H 1.00895 * 111.00438 * 303.95603 * 12 11 10 32 32 H 1.07994 * 120.80666 * 0.02562 * 18 17 16 33 33 H 1.08000 * 120.39690 * 180.23620 * 19 18 17 34 34 H 1.07996 * 119.65393 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4800 -4.9871 -0.0012 12 7 2.4346 -6.1037 -0.0018 13 6 1.7342 -7.3950 -0.0018 14 1 0.9220 -7.3677 -0.7282 15 9 1.2123 -7.6425 1.2724 16 8 2.6510 -8.4341 -0.3511 17 6 3.7295 -8.6036 0.4588 18 6 4.6649 -9.5980 0.1891 19 6 5.7497 -9.7298 1.0399 20 6 5.8615 -8.8819 2.1282 21 17 7.2134 -9.0438 3.2052 22 7 4.9538 -7.9525 2.3578 23 6 3.9095 -7.7920 1.5685 24 1 -0.4850 0.8400 0.0004 25 1 0.6239 -2.5568 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 2.8718 -3.6044 0.8895 28 1 2.8718 -3.6044 -0.8905 29 1 0.8531 -5.0451 0.8886 30 1 0.8537 -5.0446 -0.8913 31 1 3.0695 -6.0363 -0.7831 32 1 4.5498 -10.2486 -0.6652 33 1 6.4971 -10.4881 0.8590 34 1 3.1868 -7.0203 1.7889 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157640832.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:56 Heat of formation + Delta-G solvation = -83.320522 kcal Electronic energy + Delta-G solvation = -19870.106485 eV Core-core repulsion = 16356.641367 eV Total energy + Delta-G solvation = -3513.465118 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.078 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.08498 -41.66722 -39.45110 -37.59093 -37.32187 -35.28023 -33.62889 -32.77620 -31.27620 -28.52441 -26.13422 -24.89177 -24.36456 -23.43583 -22.05006 -19.87741 -18.98069 -18.45197 -18.22379 -17.84352 -17.18368 -16.59053 -16.43642 -15.92321 -15.78513 -15.22388 -14.96064 -14.48776 -14.39762 -14.31700 -14.18920 -13.99120 -13.76527 -13.40177 -13.02444 -12.70090 -12.51130 -12.47281 -12.32401 -12.29109 -11.59190 -11.41510 -11.16288 -10.94460 -10.67939 -10.55668 -9.99307 -9.49274 -8.20944 -6.31008 -0.14594 0.07588 0.80416 1.39463 1.40626 1.53304 1.64181 2.39602 2.49081 2.58279 3.12934 3.38573 3.46927 3.53226 3.83675 3.92421 4.06225 4.14135 4.28557 4.45513 4.63994 4.64909 4.85571 4.88152 4.99012 5.19810 5.21264 5.45143 5.57690 5.63881 5.75672 5.86461 6.18262 6.25958 6.63999 6.86281 7.38344 8.90929 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.019036 B = 0.003152 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.578939 B = 8881.294932 C = 9966.841866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.962 3.038 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.280 1.280 7 C -0.542 4.542 8 H 0.057 0.943 9 C 0.025 3.975 10 C -0.092 4.092 11 C 0.075 3.925 12 N -0.732 5.732 13 C 0.410 3.590 14 H 0.164 0.836 15 F -0.208 7.208 16 O -0.306 6.306 17 C 0.062 3.938 18 C -0.080 4.080 19 C -0.113 4.113 20 C 0.123 3.877 21 Cl -0.034 7.034 22 N -0.483 5.483 23 C 0.058 3.942 24 H 0.263 0.737 25 H -0.001 1.001 26 H -0.008 1.008 27 H 0.048 0.952 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.376 0.624 32 H 0.187 0.813 33 H 0.186 0.814 34 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.392 -23.577 -2.076 25.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.787 3.213 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.205 1.205 7 C -0.580 4.580 8 H 0.075 0.925 9 C -0.013 4.013 10 C -0.130 4.130 11 C -0.052 4.052 12 N -0.378 5.378 13 C 0.249 3.751 14 H 0.180 0.820 15 F -0.190 7.190 16 O -0.218 6.218 17 C 0.015 3.985 18 C -0.106 4.106 19 C -0.134 4.134 20 C -0.041 4.041 21 Cl -0.006 7.006 22 N -0.195 5.195 23 C -0.101 4.101 24 H 0.072 0.928 25 H 0.017 0.983 26 H 0.010 0.990 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.200 0.800 32 H 0.204 0.796 33 H 0.203 0.797 34 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 9.477 -23.094 -0.754 24.975 hybrid contribution -0.285 0.911 -0.870 1.292 sum 9.192 -22.183 -1.624 24.067 Atomic orbital electron populations 1.70085 1.07654 1.27677 1.51821 1.25936 0.95766 1.03230 0.94831 0.85443 0.79066 0.79035 0.77791 1.18801 1.20223 1.20529 1.21725 0.93498 0.92537 1.50279 0.92451 1.18961 0.94384 0.92756 0.95149 1.21360 0.98094 0.92559 1.01014 1.21875 0.93345 0.88501 1.01502 1.60427 1.22278 1.01820 1.53282 1.23679 0.88065 0.81769 0.81596 0.82009 1.92943 1.86949 1.93874 1.45251 1.86492 1.32458 1.53214 1.49626 1.20134 0.89350 0.97052 0.91939 1.21333 0.91201 0.96692 1.01400 1.22012 0.99401 0.99803 0.92144 1.21962 0.92310 0.96052 0.93815 1.98391 1.40758 1.96543 1.64925 1.66919 1.02506 1.19479 1.30645 1.23553 0.95712 0.99670 0.91137 0.92777 0.98294 0.98965 0.93285 0.92452 0.91229 0.92698 0.79959 0.79585 0.79661 0.80645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.13 13.29 21.45 0.28 -55.85 16 2 C 0.00 0.01 5.46 84.65 0.46 0.47 16 3 Si 0.96 44.23 29.54 68.60 2.03 46.26 16 4 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 6 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 7 C -0.54 -30.57 9.11 25.60 0.23 -30.34 16 8 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 9 C 0.03 1.27 4.97 29.85 0.15 1.42 16 10 C -0.09 -3.53 5.41 30.60 0.17 -3.36 16 11 C 0.08 2.18 5.59 86.31 0.48 2.66 16 12 N -0.73 -17.17 4.31 -627.93 -2.71 -19.88 16 13 C 0.41 8.16 4.41 127.69 0.56 8.72 16 14 H 0.16 2.21 7.97 -2.39 -0.02 2.20 16 15 F -0.21 -5.23 15.47 44.97 0.70 -4.54 16 16 O -0.31 -5.88 10.33 -92.77 -0.96 -6.84 16 17 C 0.06 1.31 6.45 22.59 0.15 1.45 16 18 C -0.08 -1.21 10.13 22.55 0.23 -0.99 16 19 C -0.11 -1.75 9.87 22.37 0.22 -1.53 16 20 C 0.12 2.80 7.27 84.72 0.62 3.41 16 21 Cl -0.03 -0.71 29.10 -2.72 -0.08 -0.79 16 22 N -0.48 -13.83 10.33 -186.32 -1.93 -15.76 16 23 C 0.06 1.54 9.32 84.79 0.79 2.33 16 24 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 25 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 26 H -0.01 -0.45 8.14 -2.39 -0.02 -0.46 16 27 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.07 2.16 8.10 -2.39 -0.02 2.14 16 30 H 0.05 1.42 8.09 -2.39 -0.02 1.40 16 31 H 0.38 7.82 8.73 -89.70 -0.78 7.04 16 32 H 0.19 1.48 8.06 -2.91 -0.02 1.45 16 33 H 0.19 1.48 8.06 -2.91 -0.02 1.45 16 34 H 0.18 5.20 4.93 -2.91 -0.01 5.18 16 Total: -1.00 -67.79 314.25 1.74 -66.05 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: 0.35 Total: 7.09 kcal Atomic # 6 Polarization: -19.80 SS G_CDS: 4.06 Total: -15.75 kcal Atomic # 7 Polarization: -87.14 SS G_CDS: -4.35 Total: -91.49 kcal Atomic # 8 Polarization: -5.88 SS G_CDS: -0.96 Total: -6.84 kcal Atomic # 9 Polarization: -5.23 SS G_CDS: 0.70 Total: -4.54 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -0.08 Total: -0.79 kcal Total: -67.79 1.74 -66.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157640832.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.270 kcal (2) G-P(sol) polarization free energy of solvation -67.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds