Wall clock time and date at job start Tue Mar 31 2020 05:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 119.99898 * 2 1 4 4 H 1.48506 * 109.46929 * 239.99943 * 3 2 1 5 5 H 1.48498 * 109.47333 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.46995 * 120.00062 * 3 2 1 7 7 C 1.37874 * 120.00115 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00179 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99822 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46952 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46995 * 179.97438 * 10 9 7 12 12 N 1.46898 * 109.46833 * 180.02562 * 11 10 9 13 13 C 1.46905 * 110.99840 * 180.02562 * 12 11 10 14 14 H 1.08996 * 109.47185 * 314.99409 * 13 12 11 15 15 F 1.39902 * 109.47268 * 74.99815 * 13 12 11 16 16 O 1.42901 * 109.47211 * 194.99793 * 13 12 11 17 17 C 1.35675 * 116.99893 * 300.00056 * 16 13 12 18 18 C 1.38887 * 119.67708 * 180.02562 * 17 16 13 19 19 C 1.38418 * 119.14183 * 180.02562 * 18 17 16 20 20 C 1.38760 * 118.50321 * 359.97438 * 19 18 17 21 21 C 1.38228 * 119.27829 * 0.02562 * 20 19 18 22 22 Cl 1.73599 * 119.59988 * 180.02562 * 21 20 19 23 23 N 1.32056 * 120.79802 * 359.72195 * 21 20 19 24 24 H 0.97007 * 120.00329 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47181 * 60.00202 * 9 7 2 26 26 H 1.08999 * 109.47394 * 299.99934 * 9 7 2 27 27 H 1.09003 * 109.46896 * 60.00171 * 10 9 7 28 28 H 1.08996 * 109.47625 * 300.00281 * 10 9 7 29 29 H 1.08989 * 109.47127 * 60.00448 * 11 10 9 30 30 H 1.09000 * 109.46995 * 299.99940 * 11 10 9 31 31 H 1.00898 * 111.00497 * 56.04492 * 12 11 10 32 32 H 1.08003 * 120.42788 * 359.96923 * 18 17 16 33 33 H 1.08004 * 120.74555 * 180.02562 * 19 18 17 34 34 H 1.07998 * 120.36534 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 6 1.4803 -4.9870 -0.0012 12 7 2.4349 -6.1035 -0.0018 13 6 1.7346 -7.3949 -0.0018 14 1 0.9230 -7.3681 0.7252 15 9 1.2117 -7.6419 -1.2757 16 8 2.6517 -8.4341 0.3463 17 6 3.7275 -8.6028 -0.4630 18 6 4.6541 -9.5971 -0.1769 19 6 5.7478 -9.7591 -1.0097 20 6 5.8765 -8.9170 -2.1051 21 6 4.9161 -7.9485 -2.3298 22 17 5.0686 -6.8910 -3.6980 23 7 3.8810 -7.8220 -1.5196 24 1 -0.4851 0.8401 -0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 2.8726 -3.6047 0.8878 28 1 2.8713 -3.6039 -0.8922 29 1 0.8528 -5.0447 -0.8904 30 1 0.8546 -5.0449 0.8895 31 1 3.0704 -6.0365 0.7790 32 1 4.5234 -10.2350 0.6847 33 1 6.4839 -10.5242 -0.8118 34 1 6.7183 -9.0166 -2.7743 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157641374.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:50 Heat of formation + Delta-G solvation = -59.952505 kcal Electronic energy + Delta-G solvation = -20063.692983 eV Core-core repulsion = 16551.241178 eV Total energy + Delta-G solvation = -3512.451805 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.078 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -47.63917 -40.76208 -38.29086 -36.62143 -35.82508 -33.26317 -32.77453 -31.13807 -30.42559 -26.73732 -24.89384 -23.76809 -22.95027 -22.17483 -20.28599 -18.96389 -17.87072 -16.72340 -16.64180 -16.26574 -16.06167 -15.53876 -15.10858 -14.92326 -14.42788 -14.15513 -13.64375 -13.58518 -13.16618 -12.75286 -12.49375 -12.35939 -12.20437 -11.76830 -11.50449 -11.33352 -11.29657 -10.83213 -10.61972 -10.54259 -10.11306 -9.84479 -9.71154 -9.35943 -9.08200 -8.86509 -8.46177 -8.32456 -5.97892 -4.00010 0.71245 0.95612 1.69344 2.56637 3.35430 3.39412 3.41058 3.42384 3.81934 4.19162 4.39934 4.49041 4.63104 4.65134 4.81722 5.04345 5.15334 5.37949 5.48801 5.63723 5.73442 5.76392 5.89879 6.22705 6.54109 6.60673 6.72858 7.03806 7.12863 7.40130 7.51550 7.69051 7.83572 8.01959 8.44951 9.06646 9.63865 11.13557 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.019748 B = 0.003579 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.536155 B = 7820.951784 C = 8619.158892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.103 4.103 11 C 0.064 3.936 12 N -0.708 5.708 13 C 0.428 3.572 14 H 0.120 0.880 15 F -0.189 7.189 16 O -0.317 6.317 17 C 0.339 3.661 18 C -0.188 4.188 19 C -0.036 4.036 20 C -0.193 4.193 21 C 0.215 3.785 22 Cl -0.023 7.023 23 N -0.482 5.482 24 H 0.261 0.739 25 H 0.017 0.983 26 H 0.014 0.986 27 H 0.045 0.955 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.031 0.969 31 H 0.357 0.643 32 H 0.147 0.853 33 H 0.150 0.850 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.379 -22.677 -0.942 24.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.141 4.141 11 C -0.064 4.064 12 N -0.351 5.351 13 C 0.266 3.734 14 H 0.136 0.864 15 F -0.171 7.171 16 O -0.225 6.225 17 C 0.160 3.840 18 C -0.209 4.209 19 C -0.062 4.062 20 C -0.214 4.214 21 C 0.051 3.949 22 Cl 0.006 6.994 23 N -0.205 5.205 24 H 0.070 0.930 25 H 0.036 0.964 26 H 0.032 0.968 27 H 0.064 0.936 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.049 0.951 31 H 0.179 0.821 32 H 0.165 0.835 33 H 0.168 0.832 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 9.571 -21.983 -1.695 24.036 hybrid contribution 0.557 0.638 0.723 1.114 sum 10.129 -21.345 -0.972 23.647 Atomic orbital electron populations 1.69954 1.06058 1.26691 1.50904 1.25021 0.94846 0.99246 0.95347 0.86651 0.79576 0.83109 0.78633 1.20198 1.21304 1.20277 1.21199 0.93019 0.91009 1.50534 0.92718 1.19061 0.93954 0.91249 0.97202 1.21602 0.99201 0.92313 1.00996 1.22169 0.93687 0.90015 1.00494 1.60358 1.21724 1.01036 1.51977 1.23059 0.86380 0.82571 0.81380 0.86393 1.92967 1.86385 1.93723 1.44010 1.86635 1.32441 1.54102 1.49304 1.19416 0.86999 0.90216 0.87334 1.21174 0.95352 1.00539 1.03815 1.21341 0.95945 0.97019 0.91857 1.21738 1.01181 0.97472 1.01012 1.21348 0.91122 0.91773 0.90683 1.98436 1.96662 1.65143 1.39205 1.66816 1.23279 1.26125 1.04298 0.92967 0.96437 0.96763 0.93591 0.92195 0.90589 0.95076 0.82051 0.83540 0.83193 0.83624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.29 13.29 55.43 0.74 -26.56 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.52 -14.97 9.11 -34.44 -0.31 -15.28 16 8 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.10 -2.16 5.41 -26.73 -0.14 -2.30 16 11 C 0.06 1.10 5.59 -3.82 -0.02 1.08 16 12 N -0.71 -10.76 5.39 -118.16 -0.64 -11.40 16 13 C 0.43 5.80 4.46 60.07 0.27 6.07 16 14 H 0.12 1.28 7.97 -51.93 -0.41 0.87 16 15 F -0.19 -3.07 16.42 2.25 0.04 -3.04 16 16 O -0.32 -4.01 10.30 -18.73 -0.19 -4.20 16 17 C 0.34 4.32 7.12 -17.12 -0.12 4.20 16 18 C -0.19 -1.72 10.04 -39.27 -0.39 -2.12 16 19 C -0.04 -0.27 10.17 -39.32 -0.40 -0.67 16 20 C -0.19 -1.75 9.87 -39.39 -0.39 -2.14 16 21 C 0.22 2.73 7.27 -17.46 -0.13 2.61 16 22 Cl -0.02 -0.30 29.11 -51.86 -1.51 -1.81 16 23 N -0.48 -7.05 7.85 -10.43 -0.08 -7.14 16 24 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 25 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.08 1.40 8.10 -51.94 -0.42 0.98 16 30 H 0.03 0.50 8.09 -51.93 -0.42 0.08 16 31 H 0.36 4.99 8.73 -39.29 -0.34 4.65 16 32 H 0.15 0.98 8.06 -52.48 -0.42 0.56 16 33 H 0.15 0.56 8.06 -52.48 -0.42 0.14 16 34 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 318.36 15.07 4.80 4.80 Total: -1.00 -32.74 318.36 -7.85 -40.59 By element: Atomic # 1 Polarization: 2.43 SS G_CDS: -4.10 Total: -1.67 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -1.88 Total: -6.55 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: 0.02 Total: -45.09 kcal Atomic # 8 Polarization: -4.01 SS G_CDS: -0.19 Total: -4.20 kcal Atomic # 9 Polarization: -3.07 SS G_CDS: 0.04 Total: -3.04 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -1.51 Total: -1.81 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.74 -7.85 -40.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157641374.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.367 kcal (2) G-P(sol) polarization free energy of solvation -32.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds