Wall clock time and date at job start Tue Mar 31 2020 05:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 119.99898 * 2 1 4 4 H 1.48506 * 109.46929 * 239.99943 * 3 2 1 5 5 H 1.48498 * 109.47333 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.46995 * 120.00062 * 3 2 1 7 7 C 1.37874 * 120.00115 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00179 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99822 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46952 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46995 * 179.97438 * 10 9 7 12 12 N 1.46898 * 109.46833 * 180.02562 * 11 10 9 13 13 C 1.46905 * 110.99840 * 180.02562 * 12 11 10 14 14 H 1.08996 * 109.47185 * 314.99409 * 13 12 11 15 15 F 1.39902 * 109.47268 * 74.99815 * 13 12 11 16 16 O 1.42901 * 109.47211 * 194.99793 * 13 12 11 17 17 C 1.35675 * 116.99893 * 300.00056 * 16 13 12 18 18 C 1.38887 * 119.67708 * 180.02562 * 17 16 13 19 19 C 1.38418 * 119.14183 * 180.02562 * 18 17 16 20 20 C 1.38760 * 118.50321 * 359.97438 * 19 18 17 21 21 C 1.38228 * 119.27829 * 0.02562 * 20 19 18 22 22 Cl 1.73599 * 119.59988 * 180.02562 * 21 20 19 23 23 N 1.32056 * 120.79802 * 359.72195 * 21 20 19 24 24 H 0.97007 * 120.00329 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47181 * 60.00202 * 9 7 2 26 26 H 1.08999 * 109.47394 * 299.99934 * 9 7 2 27 27 H 1.09003 * 109.46896 * 60.00171 * 10 9 7 28 28 H 1.08996 * 109.47625 * 300.00281 * 10 9 7 29 29 H 1.08989 * 109.47127 * 60.00448 * 11 10 9 30 30 H 1.09000 * 109.46995 * 299.99940 * 11 10 9 31 31 H 1.00898 * 111.00497 * 56.04492 * 12 11 10 32 32 H 1.08003 * 120.42788 * 359.96923 * 18 17 16 33 33 H 1.08004 * 120.74555 * 180.02562 * 19 18 17 34 34 H 1.07998 * 120.36534 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 6 1.4803 -4.9870 -0.0012 12 7 2.4349 -6.1035 -0.0018 13 6 1.7346 -7.3949 -0.0018 14 1 0.9230 -7.3681 0.7252 15 9 1.2117 -7.6419 -1.2757 16 8 2.6517 -8.4341 0.3463 17 6 3.7275 -8.6028 -0.4630 18 6 4.6541 -9.5971 -0.1769 19 6 5.7478 -9.7591 -1.0097 20 6 5.8765 -8.9170 -2.1051 21 6 4.9161 -7.9485 -2.3298 22 17 5.0686 -6.8910 -3.6980 23 7 3.8810 -7.8220 -1.5196 24 1 -0.4851 0.8401 -0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 2.8726 -3.6047 0.8878 28 1 2.8713 -3.6039 -0.8922 29 1 0.8528 -5.0447 -0.8904 30 1 0.8546 -5.0449 0.8895 31 1 3.0704 -6.0365 0.7790 32 1 4.5234 -10.2350 0.6847 33 1 6.4839 -10.5242 -0.8118 34 1 6.7183 -9.0166 -2.7743 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157641374.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:50 Heat of formation + Delta-G solvation = -83.761828 kcal Electronic energy + Delta-G solvation = -20064.725433 eV Core-core repulsion = 16551.241178 eV Total energy + Delta-G solvation = -3513.484255 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.078 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.79711 -41.59120 -39.20647 -37.57363 -37.23609 -35.23873 -33.54775 -32.86958 -31.36938 -28.47202 -26.16865 -24.56521 -24.39786 -23.36842 -22.05276 -19.94729 -18.85021 -18.44052 -17.79130 -17.53125 -16.87054 -16.65763 -16.49298 -16.09885 -15.95981 -15.46297 -14.99666 -14.30371 -14.26481 -14.15102 -14.00184 -13.79277 -13.49083 -13.15782 -12.97631 -12.69044 -12.51143 -12.40559 -12.28860 -12.24352 -11.61061 -11.42048 -11.18550 -10.90138 -10.67821 -10.55858 -9.79319 -9.53595 -8.21062 -6.32061 -0.07049 0.24076 0.83779 1.39009 1.42425 1.50292 1.66385 2.39905 2.59950 2.70959 3.12101 3.33960 3.45208 3.89382 3.98064 4.03157 4.13601 4.21364 4.32685 4.40777 4.62819 4.84810 4.87284 4.99251 5.09220 5.18768 5.24480 5.47104 5.63368 5.71204 5.78373 5.84119 6.23874 6.29555 6.66728 6.84046 7.37008 8.90689 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.019748 B = 0.003579 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.536155 B = 7820.951784 C = 8619.158892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.965 3.035 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.058 0.942 9 C 0.027 3.973 10 C -0.087 4.087 11 C 0.080 3.920 12 N -0.714 5.714 13 C 0.426 3.574 14 H 0.150 0.850 15 F -0.209 7.209 16 O -0.314 6.314 17 C 0.306 3.694 18 C -0.177 4.177 19 C -0.022 4.022 20 C -0.180 4.180 21 C 0.184 3.816 22 Cl -0.044 7.044 23 N -0.523 5.523 24 H 0.264 0.736 25 H -0.011 1.011 26 H -0.002 1.002 27 H 0.055 0.945 28 H 0.044 0.956 29 H 0.059 0.941 30 H 0.047 0.953 31 H 0.365 0.635 32 H 0.175 0.825 33 H 0.199 0.801 34 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.438 -24.120 0.098 27.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.789 3.211 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.583 4.583 8 H 0.076 0.924 9 C -0.011 4.011 10 C -0.125 4.125 11 C -0.048 4.048 12 N -0.358 5.358 13 C 0.265 3.735 14 H 0.167 0.833 15 F -0.191 7.191 16 O -0.222 6.222 17 C 0.127 3.873 18 C -0.197 4.197 19 C -0.047 4.047 20 C -0.201 4.201 21 C 0.020 3.980 22 Cl -0.016 7.016 23 N -0.246 5.246 24 H 0.073 0.927 25 H 0.008 0.992 26 H 0.016 0.984 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.188 0.812 32 H 0.192 0.808 33 H 0.216 0.784 34 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 11.654 -23.451 -0.656 26.195 hybrid contribution -0.035 0.978 0.410 1.061 sum 11.619 -22.473 -0.245 25.300 Atomic orbital electron populations 1.70085 1.07758 1.27873 1.51592 1.25973 0.95789 1.03337 0.94669 0.85509 0.78308 0.78110 0.79180 1.19445 1.20657 1.18960 1.21647 0.93470 0.92448 1.50709 0.92419 1.18951 0.94329 0.92844 0.94966 1.21306 0.97990 0.92528 1.00644 1.21793 0.93404 0.89087 1.00519 1.60121 1.21677 1.01287 1.52749 1.23303 0.87211 0.81927 0.81093 0.83333 1.92928 1.86682 1.93845 1.45630 1.86629 1.32634 1.53524 1.49388 1.19875 0.88008 0.91747 0.87663 1.21611 0.94453 0.99157 1.04528 1.21922 0.95852 0.96851 0.90069 1.22120 1.00541 0.95894 1.01580 1.21632 0.92331 0.93193 0.90810 1.98417 1.96734 1.66119 1.40316 1.66586 1.24738 1.27771 1.05523 0.92716 0.99239 0.98375 0.92615 0.93683 0.92203 0.93446 0.81174 0.80775 0.78443 0.81030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.72 13.29 21.45 0.28 -57.43 16 2 C 0.00 0.00 5.46 84.65 0.46 0.47 16 3 Si 0.96 45.14 29.54 68.60 2.03 47.16 16 4 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.54 -31.88 9.11 25.60 0.23 -31.65 16 8 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 9 C 0.03 1.44 4.97 29.85 0.15 1.59 16 10 C -0.09 -3.69 5.41 30.60 0.17 -3.53 16 11 C 0.08 2.78 5.59 86.30 0.48 3.26 16 12 N -0.71 -21.55 5.39 -627.95 -3.39 -24.94 16 13 C 0.43 11.29 4.46 127.69 0.57 11.86 16 14 H 0.15 2.99 7.97 -2.39 -0.02 2.97 16 15 F -0.21 -6.88 16.42 44.97 0.74 -6.14 16 16 O -0.31 -7.57 10.30 -89.92 -0.93 -8.50 16 17 C 0.31 7.39 7.12 84.78 0.60 8.00 16 18 C -0.18 -2.69 10.04 22.47 0.23 -2.46 16 19 C -0.02 -0.23 10.17 22.44 0.23 -0.01 16 20 C -0.18 -2.81 9.87 22.39 0.22 -2.59 16 21 C 0.18 4.57 7.27 84.66 0.62 5.18 16 22 Cl -0.04 -1.17 29.11 -2.72 -0.08 -1.25 16 23 N -0.52 -15.19 7.85 -299.78 -2.35 -17.54 16 24 H 0.26 15.34 8.31 -92.70 -0.77 14.57 16 25 H -0.01 -0.64 8.14 -2.39 -0.02 -0.65 16 26 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 27 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.06 2.27 8.10 -2.39 -0.02 2.25 16 30 H 0.05 1.49 8.09 -2.39 -0.02 1.47 16 31 H 0.37 9.94 8.73 -89.70 -0.78 9.16 16 32 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16 33 H 0.20 0.25 8.06 -2.91 -0.02 0.23 16 34 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 Total: -1.00 -73.23 318.36 0.60 -72.63 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: 0.34 Total: 5.87 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: 3.95 Total: -9.87 kcal Atomic # 7 Polarization: -94.46 SS G_CDS: -5.45 Total: -99.91 kcal Atomic # 8 Polarization: -7.57 SS G_CDS: -0.93 Total: -8.50 kcal Atomic # 9 Polarization: -6.88 SS G_CDS: 0.74 Total: -6.14 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.16 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -0.08 Total: -1.25 kcal Total: -73.23 0.60 -72.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157641374.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.128 kcal (2) G-P(sol) polarization free energy of solvation -73.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds