Wall clock time and date at job start Tue Mar 31 2020 05:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86796 * 120.00485 * 2 1 4 4 H 1.48497 * 109.47674 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47075 * 300.00204 * 3 2 1 6 6 H 1.48501 * 109.46893 * 60.00027 * 3 2 1 7 7 C 1.37883 * 119.99929 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00348 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99673 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47445 * 179.97438 * 10 9 7 12 12 N 1.46897 * 109.47514 * 179.97438 * 11 10 9 13 13 C 1.46901 * 111.00242 * 180.02562 * 12 11 10 14 14 H 1.08994 * 109.46523 * 45.00460 * 13 12 11 15 15 F 1.39902 * 109.46963 * 285.00371 * 13 12 11 16 16 O 1.42899 * 109.47047 * 165.00423 * 13 12 11 17 17 C 1.35667 * 117.00267 * 59.99886 * 16 13 12 18 18 C 1.38892 * 119.68043 * 180.02562 * 17 16 13 19 19 C 1.38415 * 119.14508 * 179.97438 * 18 17 16 20 20 C 1.38759 * 118.50005 * 0.25441 * 19 18 17 21 21 C 1.38226 * 119.27778 * 359.49547 * 20 19 18 22 22 Cl 1.73601 * 119.59855 * 180.27343 * 21 20 19 23 23 N 1.32048 * 120.79996 * 0.51858 * 21 20 19 24 24 H 0.97004 * 119.99838 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47859 * 60.00111 * 9 7 2 26 26 H 1.09003 * 109.46896 * 299.99988 * 9 7 2 27 27 H 1.09005 * 109.47263 * 59.99870 * 10 9 7 28 28 H 1.08999 * 109.47392 * 300.00272 * 10 9 7 29 29 H 1.09005 * 109.46633 * 59.99929 * 11 10 9 30 30 H 1.08999 * 109.47411 * 300.00705 * 11 10 9 31 31 H 1.00899 * 111.00065 * 303.96336 * 12 11 10 32 32 H 1.08003 * 120.42335 * 0.02562 * 18 17 16 33 33 H 1.08002 * 120.74598 * 179.97438 * 19 18 17 34 34 H 1.08004 * 120.36506 * 179.75178 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4991 -0.0017 10 6 2.2451 -3.6621 -0.0027 11 6 1.4800 -4.9872 -0.0033 12 7 2.4345 -6.1038 -0.0049 13 6 1.7342 -7.3951 -0.0061 14 1 0.9221 -7.3671 -0.7324 15 9 1.2122 -7.6436 1.2679 16 8 2.6510 -8.4338 -0.3562 17 6 3.7273 -8.6036 0.4520 18 6 4.6543 -9.5969 0.1632 19 6 5.7486 -9.7600 0.9949 20 6 5.8751 -8.9233 2.0946 21 6 4.9172 -7.9523 2.3189 22 17 5.0710 -6.8963 3.6882 23 7 3.8841 -7.8214 1.5070 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5564 -0.8919 26 1 0.6239 -2.5574 0.8880 27 1 2.8718 -3.6052 0.8873 28 1 2.8718 -3.6036 -0.8926 29 1 0.8531 -5.0443 -0.8931 30 1 0.8536 -5.0454 0.8868 31 1 3.0690 -6.0360 -0.7866 32 1 4.5232 -10.2331 -0.6996 33 1 6.4850 -10.5244 0.7950 34 1 6.7150 -9.0268 2.7657 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157641375.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:52 Heat of formation + Delta-G solvation = -59.999146 kcal Electronic energy + Delta-G solvation = -20063.888076 eV Core-core repulsion = 16551.434248 eV Total energy + Delta-G solvation = -3512.453827 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.078 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -47.64080 -40.76342 -38.29234 -36.62136 -35.82543 -33.26538 -32.77527 -31.13909 -30.42625 -26.73928 -24.89498 -23.76839 -22.95180 -22.17544 -20.28726 -18.96491 -17.87123 -16.72520 -16.64163 -16.27108 -16.06203 -15.53909 -15.10775 -14.92537 -14.42065 -14.15559 -13.64493 -13.58624 -13.16683 -12.75269 -12.49404 -12.36473 -12.21676 -11.76356 -11.50513 -11.33215 -11.29550 -10.86889 -10.62439 -10.49436 -10.11315 -9.84531 -9.71730 -9.36556 -9.05801 -8.86479 -8.46170 -8.33276 -5.98387 -4.00245 0.71236 0.95633 1.69321 2.56576 3.32697 3.40017 3.41141 3.44745 3.82001 4.19130 4.39894 4.48946 4.63080 4.65142 4.81716 5.04336 5.15250 5.37710 5.48792 5.63690 5.73374 5.76383 5.89875 6.22617 6.54064 6.60667 6.72833 7.03798 7.12852 7.40097 7.51577 7.69378 7.83375 8.01759 8.44844 9.06890 9.63741 11.13149 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.019751 B = 0.003579 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.300332 B = 7821.909638 C = 8619.674142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.022 3.978 10 C -0.103 4.103 11 C 0.064 3.936 12 N -0.708 5.708 13 C 0.428 3.572 14 H 0.120 0.880 15 F -0.189 7.189 16 O -0.317 6.317 17 C 0.339 3.661 18 C -0.188 4.188 19 C -0.036 4.036 20 C -0.193 4.193 21 C 0.215 3.785 22 Cl -0.023 7.023 23 N -0.482 5.482 24 H 0.259 0.741 25 H 0.014 0.986 26 H 0.017 0.983 27 H 0.059 0.941 28 H 0.045 0.955 29 H 0.031 0.969 30 H 0.076 0.924 31 H 0.357 0.643 32 H 0.147 0.853 33 H 0.150 0.850 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.397 -22.709 0.916 24.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.015 4.015 10 C -0.141 4.141 11 C -0.064 4.064 12 N -0.351 5.351 13 C 0.266 3.734 14 H 0.136 0.864 15 F -0.171 7.171 16 O -0.225 6.225 17 C 0.160 3.840 18 C -0.209 4.209 19 C -0.062 4.062 20 C -0.214 4.214 21 C 0.051 3.949 22 Cl 0.006 6.994 23 N -0.205 5.205 24 H 0.069 0.931 25 H 0.032 0.968 26 H 0.036 0.964 27 H 0.078 0.922 28 H 0.064 0.936 29 H 0.049 0.951 30 H 0.094 0.906 31 H 0.179 0.821 32 H 0.165 0.835 33 H 0.168 0.832 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 9.604 -22.017 1.668 24.078 hybrid contribution 0.528 0.645 -0.722 1.102 sum 10.132 -21.372 0.946 23.671 Atomic orbital electron populations 1.69975 1.06058 1.26457 1.51088 1.25027 0.94849 0.99278 0.95377 0.86538 0.80152 0.83789 0.77546 1.19724 1.21065 1.20993 1.21274 0.93093 0.90977 1.50251 0.92610 1.19071 0.93969 0.91287 0.97212 1.21601 0.99197 0.92305 1.01003 1.22172 0.93682 0.90018 1.00498 1.60368 1.21772 1.01024 1.51900 1.23059 0.86397 0.82581 0.81361 0.86393 1.92966 1.86423 1.93698 1.44005 1.86632 1.32406 1.54140 1.49300 1.19415 0.86994 0.90181 0.87378 1.21174 0.95307 1.00574 1.03824 1.21340 0.95945 0.97033 0.91843 1.21739 1.01205 0.97518 1.00943 1.21345 0.91176 0.91750 0.90655 1.98436 1.96644 1.65256 1.39113 1.66811 1.23244 1.26130 1.04326 0.93088 0.96761 0.96422 0.92203 0.93579 0.95083 0.90590 0.82058 0.83541 0.83194 0.83624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.10 -2.16 5.41 -26.73 -0.14 -2.30 16 11 C 0.06 1.10 5.59 -3.82 -0.02 1.08 16 12 N -0.71 -10.75 5.39 -118.16 -0.64 -11.39 16 13 C 0.43 5.80 4.46 60.07 0.27 6.07 16 14 H 0.12 1.28 7.97 -51.93 -0.41 0.87 16 15 F -0.19 -3.07 16.42 2.25 0.04 -3.04 16 16 O -0.32 -4.01 10.30 -18.70 -0.19 -4.20 16 17 C 0.34 4.32 7.12 -17.12 -0.12 4.20 16 18 C -0.19 -1.72 10.04 -39.27 -0.39 -2.12 16 19 C -0.04 -0.27 10.17 -39.32 -0.40 -0.67 16 20 C -0.19 -1.75 9.87 -39.39 -0.39 -2.14 16 21 C 0.22 2.73 7.27 -17.46 -0.13 2.61 16 22 Cl -0.02 -0.30 29.11 -51.86 -1.51 -1.81 16 23 N -0.48 -7.05 7.85 -10.44 -0.08 -7.13 16 24 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 25 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.03 0.50 8.09 -51.93 -0.42 0.08 16 30 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 31 H 0.36 4.99 8.73 -39.29 -0.34 4.65 16 32 H 0.15 0.98 8.06 -52.48 -0.42 0.56 16 33 H 0.15 0.56 8.06 -52.49 -0.42 0.14 16 34 H 0.15 0.95 8.06 -52.48 -0.42 0.53 16 LS Contribution 318.36 15.07 4.80 4.80 Total: -1.00 -32.77 318.36 -7.85 -40.62 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: -4.10 Total: -1.74 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: -1.88 Total: -6.54 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: 0.02 Total: -45.05 kcal Atomic # 8 Polarization: -4.01 SS G_CDS: -0.19 Total: -4.20 kcal Atomic # 9 Polarization: -3.07 SS G_CDS: 0.04 Total: -3.04 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -1.51 Total: -1.81 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.77 -7.85 -40.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157641375.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.384 kcal (2) G-P(sol) polarization free energy of solvation -32.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds