Wall clock time and date at job start Tue Mar 31 2020 05:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86796 * 120.00485 * 2 1 4 4 H 1.48497 * 109.47674 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47075 * 300.00204 * 3 2 1 6 6 H 1.48501 * 109.46893 * 60.00027 * 3 2 1 7 7 C 1.37883 * 119.99929 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00348 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99673 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47445 * 179.97438 * 10 9 7 12 12 N 1.46897 * 109.47514 * 179.97438 * 11 10 9 13 13 C 1.46901 * 111.00242 * 180.02562 * 12 11 10 14 14 H 1.08994 * 109.46523 * 45.00460 * 13 12 11 15 15 F 1.39902 * 109.46963 * 285.00371 * 13 12 11 16 16 O 1.42899 * 109.47047 * 165.00423 * 13 12 11 17 17 C 1.35667 * 117.00267 * 59.99886 * 16 13 12 18 18 C 1.38892 * 119.68043 * 180.02562 * 17 16 13 19 19 C 1.38415 * 119.14508 * 179.97438 * 18 17 16 20 20 C 1.38759 * 118.50005 * 0.25441 * 19 18 17 21 21 C 1.38226 * 119.27778 * 359.49547 * 20 19 18 22 22 Cl 1.73601 * 119.59855 * 180.27343 * 21 20 19 23 23 N 1.32048 * 120.79996 * 0.51858 * 21 20 19 24 24 H 0.97004 * 119.99838 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47859 * 60.00111 * 9 7 2 26 26 H 1.09003 * 109.46896 * 299.99988 * 9 7 2 27 27 H 1.09005 * 109.47263 * 59.99870 * 10 9 7 28 28 H 1.08999 * 109.47392 * 300.00272 * 10 9 7 29 29 H 1.09005 * 109.46633 * 59.99929 * 11 10 9 30 30 H 1.08999 * 109.47411 * 300.00705 * 11 10 9 31 31 H 1.00899 * 111.00065 * 303.96336 * 12 11 10 32 32 H 1.08003 * 120.42335 * 0.02562 * 18 17 16 33 33 H 1.08002 * 120.74598 * 179.97438 * 19 18 17 34 34 H 1.08004 * 120.36506 * 179.75178 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4991 -0.0017 10 6 2.2451 -3.6621 -0.0027 11 6 1.4800 -4.9872 -0.0033 12 7 2.4345 -6.1038 -0.0049 13 6 1.7342 -7.3951 -0.0061 14 1 0.9221 -7.3671 -0.7324 15 9 1.2122 -7.6436 1.2679 16 8 2.6510 -8.4338 -0.3562 17 6 3.7273 -8.6036 0.4520 18 6 4.6543 -9.5969 0.1632 19 6 5.7486 -9.7600 0.9949 20 6 5.8751 -8.9233 2.0946 21 6 4.9172 -7.9523 2.3189 22 17 5.0710 -6.8963 3.6882 23 7 3.8841 -7.8214 1.5070 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5564 -0.8919 26 1 0.6239 -2.5574 0.8880 27 1 2.8718 -3.6052 0.8873 28 1 2.8718 -3.6036 -0.8926 29 1 0.8531 -5.0443 -0.8931 30 1 0.8536 -5.0454 0.8868 31 1 3.0690 -6.0360 -0.7866 32 1 4.5232 -10.2331 -0.6996 33 1 6.4850 -10.5244 0.7950 34 1 6.7150 -9.0268 2.7657 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157641375.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:52 Heat of formation + Delta-G solvation = -83.825697 kcal Electronic energy + Delta-G solvation = -20064.921272 eV Core-core repulsion = 16551.434248 eV Total energy + Delta-G solvation = -3513.487024 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.078 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.79803 -41.59223 -39.20746 -37.57314 -37.23599 -35.24038 -33.54821 -32.87042 -31.36927 -28.47395 -26.16968 -24.56549 -24.39887 -23.36797 -22.05309 -19.94782 -18.85120 -18.44664 -17.79198 -17.53187 -16.87014 -16.65744 -16.48624 -16.09846 -15.95978 -15.46390 -14.99993 -14.31310 -14.27082 -14.14945 -14.00049 -13.79308 -13.48560 -13.15840 -12.98375 -12.72176 -12.51886 -12.38303 -12.27140 -12.23653 -11.61717 -11.42102 -11.16418 -10.90124 -10.67765 -10.56929 -9.79206 -9.53574 -8.21473 -6.32175 -0.07031 0.24128 0.83790 1.38829 1.39599 1.52972 1.66379 2.39737 2.59989 2.71064 3.11865 3.33942 3.45242 3.89387 3.98072 4.03145 4.13632 4.21395 4.32677 4.40793 4.62845 4.84821 4.87207 4.99302 5.09235 5.18826 5.24501 5.47479 5.63481 5.71171 5.78397 5.84171 6.23893 6.29546 6.66793 6.84287 7.36950 8.90679 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.019751 B = 0.003579 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.300332 B = 7821.909638 C = 8619.674142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.965 3.035 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.278 1.278 7 C -0.542 4.542 8 H 0.057 0.943 9 C 0.026 3.974 10 C -0.087 4.087 11 C 0.080 3.920 12 N -0.714 5.714 13 C 0.426 3.574 14 H 0.150 0.850 15 F -0.209 7.209 16 O -0.314 6.314 17 C 0.306 3.694 18 C -0.177 4.177 19 C -0.022 4.022 20 C -0.180 4.180 21 C 0.184 3.816 22 Cl -0.044 7.044 23 N -0.523 5.523 24 H 0.264 0.736 25 H -0.002 1.002 26 H -0.010 1.010 27 H 0.044 0.956 28 H 0.055 0.945 29 H 0.047 0.953 30 H 0.059 0.941 31 H 0.365 0.635 32 H 0.175 0.825 33 H 0.199 0.801 34 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.420 -24.147 -0.118 27.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.790 3.210 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.204 1.204 7 C -0.580 4.580 8 H 0.075 0.925 9 C -0.011 4.011 10 C -0.125 4.125 11 C -0.048 4.048 12 N -0.358 5.358 13 C 0.265 3.735 14 H 0.167 0.833 15 F -0.191 7.191 16 O -0.222 6.222 17 C 0.127 3.873 18 C -0.198 4.198 19 C -0.047 4.047 20 C -0.201 4.201 21 C 0.020 3.980 22 Cl -0.016 7.016 23 N -0.246 5.246 24 H 0.073 0.927 25 H 0.016 0.984 26 H 0.008 0.992 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.188 0.812 32 H 0.192 0.808 33 H 0.216 0.784 34 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 11.648 -23.478 0.635 26.216 hybrid contribution -0.054 0.986 -0.412 1.070 sum 11.594 -22.492 0.224 25.305 Atomic orbital electron populations 1.70097 1.07742 1.27727 1.51732 1.25975 0.95797 1.03346 0.94711 0.85397 0.79016 0.78760 0.77871 1.18746 1.20067 1.20416 1.21698 0.93457 0.92427 1.50462 0.92451 1.18960 0.94338 0.92862 0.94986 1.21306 0.97989 0.92531 1.00643 1.21796 0.93401 0.89085 1.00525 1.60132 1.21727 1.01276 1.52673 1.23303 0.87229 0.81935 0.81075 0.83330 1.92927 1.86719 1.93819 1.45623 1.86626 1.32598 1.53563 1.49383 1.19874 0.88000 0.91708 0.87712 1.21611 0.94413 0.99191 1.04536 1.21921 0.95854 0.96858 0.90061 1.22121 1.00556 0.95930 1.01531 1.21629 0.92390 0.93174 0.90773 1.98417 1.96716 1.66230 1.40224 1.66581 1.24702 1.27776 1.05550 0.92733 0.98363 0.99209 0.93698 0.92615 0.93450 0.92198 0.81185 0.80777 0.78445 0.81029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.62 13.29 21.45 0.28 -57.33 16 2 C 0.00 -0.04 5.46 84.66 0.46 0.43 16 3 Si 0.97 45.18 29.54 68.60 2.03 47.21 16 4 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 7 C -0.54 -31.74 9.11 25.60 0.23 -31.51 16 8 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 9 C 0.03 1.41 4.97 29.85 0.15 1.56 16 10 C -0.09 -3.69 5.41 30.60 0.17 -3.53 16 11 C 0.08 2.78 5.59 86.31 0.48 3.26 16 12 N -0.71 -21.54 5.39 -627.95 -3.38 -24.92 16 13 C 0.43 11.29 4.46 127.69 0.57 11.85 16 14 H 0.15 2.99 7.97 -2.39 -0.02 2.97 16 15 F -0.21 -6.87 16.42 44.97 0.74 -6.14 16 16 O -0.31 -7.57 10.30 -89.83 -0.92 -8.49 16 17 C 0.31 7.39 7.12 84.78 0.60 7.99 16 18 C -0.18 -2.69 10.04 22.47 0.23 -2.46 16 19 C -0.02 -0.23 10.17 22.44 0.23 -0.01 16 20 C -0.18 -2.81 9.87 22.39 0.22 -2.59 16 21 C 0.18 4.56 7.27 84.66 0.62 5.18 16 22 Cl -0.04 -1.17 29.11 -2.72 -0.08 -1.25 16 23 N -0.52 -15.18 7.85 -299.79 -2.35 -17.54 16 24 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 25 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 26 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 27 H 0.04 2.02 8.14 -2.38 -0.02 2.00 16 28 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.05 1.49 8.09 -2.38 -0.02 1.47 16 30 H 0.06 2.27 8.10 -2.39 -0.02 2.25 16 31 H 0.37 9.94 8.73 -89.69 -0.78 9.16 16 32 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16 33 H 0.20 0.25 8.06 -2.91 -0.02 0.23 16 34 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 Total: -1.00 -73.25 318.36 0.60 -72.65 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: 0.34 Total: 5.62 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: 3.95 Total: -9.81 kcal Atomic # 7 Polarization: -94.34 SS G_CDS: -5.45 Total: -99.79 kcal Atomic # 8 Polarization: -7.57 SS G_CDS: -0.92 Total: -8.49 kcal Atomic # 9 Polarization: -6.87 SS G_CDS: 0.74 Total: -6.14 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -0.08 Total: -1.25 kcal Total: -73.25 0.60 -72.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157641375.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.178 kcal (2) G-P(sol) polarization free energy of solvation -73.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds