Wall clock time and date at job start Tue Mar 31 2020 06:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47629 * 2 1 4 4 H 1.09000 * 109.46931 * 302.93094 * 3 2 1 5 5 C 1.50699 * 109.47614 * 182.92805 * 3 2 1 6 6 H 1.08003 * 120.00148 * 240.00407 * 5 3 2 7 7 C 1.37876 * 119.99765 * 59.99977 * 5 3 2 8 8 N 1.31506 * 120.00133 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99756 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.46955 * 90.00303 * 9 7 5 11 11 H 1.48503 * 109.47338 * 210.00094 * 9 7 5 12 12 H 1.48495 * 109.47308 * 330.00028 * 9 7 5 13 13 N 1.46900 * 109.46985 * 62.92568 * 3 2 1 14 14 C 1.46901 * 111.00228 * 205.83870 * 13 3 2 15 15 H 1.08996 * 109.47001 * 315.44411 * 14 13 3 16 16 F 1.39900 * 109.46634 * 75.44428 * 14 13 3 17 17 O 1.42902 * 109.46963 * 195.44029 * 14 13 3 18 18 C 1.35673 * 117.00444 * 299.99893 * 17 14 13 19 19 C 1.38882 * 119.67911 * 179.97438 * 18 17 14 20 20 C 1.38419 * 119.14524 * 179.97438 * 19 18 17 21 21 C 1.38763 * 118.49748 * 0.27934 * 20 19 18 22 22 C 1.38221 * 119.27857 * 359.45167 * 21 20 19 23 23 Cl 1.73600 * 119.60093 * 180.25441 * 22 21 20 24 24 N 1.32062 * 120.79920 * 0.55885 * 22 21 20 25 25 H 1.08993 * 109.47068 * 294.89992 * 1 2 3 26 26 H 1.09007 * 109.46553 * 54.89423 * 1 2 3 27 27 H 1.09001 * 109.47267 * 174.89110 * 1 2 3 28 28 H 1.09002 * 109.47564 * 239.99719 * 2 1 3 29 29 H 1.09004 * 109.47163 * 120.00541 * 2 1 3 30 30 H 0.97009 * 119.99911 * 179.97438 * 8 7 5 31 31 H 1.00906 * 111.00023 * 81.88613 * 13 3 2 32 32 H 1.08006 * 120.42430 * 0.02562 * 19 18 17 33 33 H 1.08001 * 120.75131 * 180.02562 * 20 19 18 34 34 H 1.07999 * 120.36117 * 179.72543 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6345 1.9712 -0.8626 5 6 3.5453 1.4430 -0.0726 6 1 4.1239 1.8970 0.7184 7 6 4.1838 0.8640 -1.1487 8 7 3.4793 0.3116 -2.1120 9 14 6.0497 0.8641 -1.2383 10 1 6.5767 -0.3604 -0.5838 11 1 6.4770 0.8883 -2.6603 12 1 6.5786 2.0643 -0.5420 13 7 1.6090 2.1142 1.2332 14 6 1.5173 3.5671 1.0368 15 1 2.3957 3.9166 0.4943 16 9 0.3654 3.8664 0.3016 17 8 1.4530 4.2165 2.3082 18 6 0.4112 3.8911 3.1141 19 6 0.2948 4.4887 4.3624 20 6 -0.7728 4.1490 5.1754 21 6 -1.6875 3.2145 4.7111 22 6 -1.5128 2.6636 3.4555 23 17 -2.6558 1.4987 2.8637 24 7 -0.4837 3.0083 2.7031 25 1 -0.3633 0.4327 0.9321 26 1 -0.3633 0.5911 -0.8408 27 1 -0.3634 -1.0236 -0.0915 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.9285 -0.0955 -2.8693 31 1 2.2250 1.8912 2.0007 32 1 1.0273 5.2097 4.6941 33 1 -0.8889 4.5980 6.1508 34 1 -2.5292 2.9241 5.3224 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161049013.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:24 Heat of formation + Delta-G solvation = -55.529654 kcal Electronic energy + Delta-G solvation = -21224.927784 eV Core-core repulsion = 17712.667769 eV Total energy + Delta-G solvation = -3512.260016 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.078 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -47.00369 -40.41312 -37.83775 -36.39811 -35.70607 -32.49110 -32.19209 -30.89189 -30.08507 -26.60286 -24.65269 -23.45670 -22.88224 -21.94963 -19.65049 -18.56164 -17.43781 -16.68568 -16.16868 -16.15584 -15.54918 -15.12642 -14.71569 -14.61643 -14.06570 -13.37219 -13.23736 -12.89842 -12.85349 -12.49316 -12.17430 -11.88467 -11.71564 -11.35209 -11.25291 -11.14482 -11.10367 -10.83775 -10.69856 -10.21595 -9.83131 -9.69565 -9.54812 -9.47096 -9.15423 -8.53088 -8.46652 -7.54344 -6.09361 -4.24284 0.99586 1.24444 1.91798 3.09420 3.22402 3.30041 3.31572 3.71721 4.31509 4.42863 4.72568 4.91785 4.95741 5.07271 5.18554 5.29350 5.36412 5.73855 5.98286 6.01248 6.18455 6.46335 6.60718 6.79222 6.95902 7.20169 7.30133 7.32820 7.51760 7.70568 7.79881 7.96240 7.96937 8.15422 8.45014 8.86220 9.44615 10.91356 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.021756 B = 0.005285 C = 0.004604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.691488 B = 5296.727451 C = 6079.906898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.100 4.100 3 C 0.221 3.779 4 H 0.038 0.962 5 C -0.560 4.560 6 H 0.056 0.944 7 C 0.072 3.928 8 N -0.879 5.879 9 Si 0.892 3.108 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.275 1.275 13 N -0.701 5.701 14 C 0.428 3.572 15 H 0.124 0.876 16 F -0.197 7.197 17 O -0.321 6.321 18 C 0.348 3.652 19 C -0.193 4.193 20 C -0.038 4.038 21 C -0.200 4.200 22 C 0.216 3.784 23 Cl -0.031 7.031 24 N -0.477 5.477 25 H 0.056 0.944 26 H 0.036 0.964 27 H 0.021 0.979 28 H 0.090 0.910 29 H 0.030 0.970 30 H 0.263 0.737 31 H 0.347 0.653 32 H 0.145 0.855 33 H 0.147 0.853 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.466 6.434 13.001 16.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.138 4.138 3 C 0.115 3.885 4 H 0.056 0.944 5 C -0.599 4.599 6 H 0.074 0.926 7 C -0.132 4.132 8 N -0.516 5.516 9 Si 0.720 3.280 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.200 1.200 13 N -0.342 5.342 14 C 0.266 3.734 15 H 0.140 0.860 16 F -0.179 7.179 17 O -0.229 6.229 18 C 0.169 3.831 19 C -0.214 4.214 20 C -0.063 4.063 21 C -0.222 4.222 22 C 0.051 3.949 23 Cl -0.002 7.002 24 N -0.200 5.200 25 H 0.075 0.925 26 H 0.055 0.945 27 H 0.040 0.960 28 H 0.108 0.892 29 H 0.049 0.951 30 H 0.074 0.926 31 H 0.168 0.832 32 H 0.162 0.838 33 H 0.165 0.835 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -8.913 5.968 11.811 15.955 hybrid contribution 1.699 0.220 0.304 1.740 sum -7.214 6.188 12.115 15.399 Atomic orbital electron populations 1.21681 0.98415 0.97997 1.01240 1.21427 0.92547 0.98248 1.01590 1.19172 0.92530 0.91698 0.85140 0.94387 1.21838 0.92217 1.39054 1.06758 0.92628 1.24916 0.98281 0.94625 0.95363 1.69887 1.35213 1.36861 1.09616 0.86602 0.85635 0.78478 0.77305 1.20553 1.21106 1.19986 1.60782 1.57910 1.04418 1.11116 1.23142 0.85194 0.89211 0.75834 0.85957 1.92908 1.54637 1.93210 1.77140 1.86650 1.42597 1.64396 1.29228 1.19494 0.86199 0.88944 0.88440 1.21178 1.01904 1.05085 0.93282 1.21277 0.91724 0.94206 0.99139 1.21650 1.03135 1.01329 0.96068 1.21309 0.90773 0.92710 0.90120 1.98412 1.55945 1.56468 1.89420 1.66876 1.02797 1.14139 1.36163 0.92523 0.94526 0.96008 0.89162 0.95138 0.92644 0.83199 0.83752 0.83536 0.84003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 9.72 37.16 0.36 -2.61 16 2 C -0.10 -2.41 5.44 -26.74 -0.15 -2.55 16 3 C 0.22 5.40 1.93 -68.87 -0.13 5.27 16 4 H 0.04 1.04 7.69 -51.93 -0.40 0.64 16 5 C -0.56 -14.51 8.29 -34.44 -0.29 -14.79 16 6 H 0.06 1.41 7.73 -52.48 -0.41 1.00 16 7 C 0.07 1.91 5.30 -17.82 -0.09 1.82 16 8 N -0.88 -24.34 11.30 55.43 0.63 -23.72 16 9 Si 0.89 20.55 29.54 -169.99 -5.02 15.53 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 13 N -0.70 -14.79 4.59 -112.30 -0.52 -15.31 16 14 C 0.43 8.44 4.28 60.07 0.26 8.69 16 15 H 0.12 2.39 7.78 -51.93 -0.40 1.99 16 16 F -0.20 -4.23 16.29 2.25 0.04 -4.20 16 17 O -0.32 -5.60 10.29 -18.72 -0.19 -5.79 16 18 C 0.35 5.65 7.12 -17.13 -0.12 5.52 16 19 C -0.19 -2.34 10.04 -39.28 -0.39 -2.74 16 20 C -0.04 -0.37 10.17 -39.32 -0.40 -0.77 16 21 C -0.20 -2.24 9.87 -39.39 -0.39 -2.63 16 22 C 0.22 3.21 7.27 -17.46 -0.13 3.08 16 23 Cl -0.03 -0.44 29.11 -51.86 -1.51 -1.95 16 24 N -0.48 -8.35 7.85 -10.44 -0.08 -8.44 16 25 H 0.06 1.23 7.84 -51.93 -0.41 0.82 16 26 H 0.04 0.82 8.14 -51.92 -0.42 0.40 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.09 2.42 6.00 -51.93 -0.31 2.10 16 29 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.35 7.21 8.40 -39.29 -0.33 6.88 16 32 H 0.14 1.41 8.06 -52.48 -0.42 0.99 16 33 H 0.15 0.87 8.06 -52.49 -0.42 0.44 16 34 H 0.14 1.19 8.06 -52.49 -0.42 0.76 16 LS Contribution 312.05 15.07 4.70 4.70 Total: -1.00 -28.61 312.05 -7.36 -35.97 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -3.93 Total: 4.92 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -1.47 Total: -1.71 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: 0.03 Total: -47.46 kcal Atomic # 8 Polarization: -5.60 SS G_CDS: -0.19 Total: -5.79 kcal Atomic # 9 Polarization: -4.23 SS G_CDS: 0.04 Total: -4.20 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -1.51 Total: -1.95 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.61 -7.36 -35.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049013.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.563 kcal (2) G-P(sol) polarization free energy of solvation -28.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds