Wall clock time and date at job start Tue Mar 31 2020 06:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47629 * 2 1 4 4 H 1.09000 * 109.46931 * 302.93094 * 3 2 1 5 5 C 1.50699 * 109.47614 * 182.92805 * 3 2 1 6 6 H 1.08003 * 120.00148 * 240.00407 * 5 3 2 7 7 C 1.37876 * 119.99765 * 59.99977 * 5 3 2 8 8 N 1.31506 * 120.00133 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99756 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.46955 * 90.00303 * 9 7 5 11 11 H 1.48503 * 109.47338 * 210.00094 * 9 7 5 12 12 H 1.48495 * 109.47308 * 330.00028 * 9 7 5 13 13 N 1.46900 * 109.46985 * 62.92568 * 3 2 1 14 14 C 1.46901 * 111.00228 * 205.83870 * 13 3 2 15 15 H 1.08996 * 109.47001 * 315.44411 * 14 13 3 16 16 F 1.39900 * 109.46634 * 75.44428 * 14 13 3 17 17 O 1.42902 * 109.46963 * 195.44029 * 14 13 3 18 18 C 1.35673 * 117.00444 * 299.99893 * 17 14 13 19 19 C 1.38882 * 119.67911 * 179.97438 * 18 17 14 20 20 C 1.38419 * 119.14524 * 179.97438 * 19 18 17 21 21 C 1.38763 * 118.49748 * 0.27934 * 20 19 18 22 22 C 1.38221 * 119.27857 * 359.45167 * 21 20 19 23 23 Cl 1.73600 * 119.60093 * 180.25441 * 22 21 20 24 24 N 1.32062 * 120.79920 * 0.55885 * 22 21 20 25 25 H 1.08993 * 109.47068 * 294.89992 * 1 2 3 26 26 H 1.09007 * 109.46553 * 54.89423 * 1 2 3 27 27 H 1.09001 * 109.47267 * 174.89110 * 1 2 3 28 28 H 1.09002 * 109.47564 * 239.99719 * 2 1 3 29 29 H 1.09004 * 109.47163 * 120.00541 * 2 1 3 30 30 H 0.97009 * 119.99911 * 179.97438 * 8 7 5 31 31 H 1.00906 * 111.00023 * 81.88613 * 13 3 2 32 32 H 1.08006 * 120.42430 * 0.02562 * 19 18 17 33 33 H 1.08001 * 120.75131 * 180.02562 * 20 19 18 34 34 H 1.07999 * 120.36117 * 179.72543 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6345 1.9712 -0.8626 5 6 3.5453 1.4430 -0.0726 6 1 4.1239 1.8970 0.7184 7 6 4.1838 0.8640 -1.1487 8 7 3.4793 0.3116 -2.1120 9 14 6.0497 0.8641 -1.2383 10 1 6.5767 -0.3604 -0.5838 11 1 6.4770 0.8883 -2.6603 12 1 6.5786 2.0643 -0.5420 13 7 1.6090 2.1142 1.2332 14 6 1.5173 3.5671 1.0368 15 1 2.3957 3.9166 0.4943 16 9 0.3654 3.8664 0.3016 17 8 1.4530 4.2165 2.3082 18 6 0.4112 3.8911 3.1141 19 6 0.2948 4.4887 4.3624 20 6 -0.7728 4.1490 5.1754 21 6 -1.6875 3.2145 4.7111 22 6 -1.5128 2.6636 3.4555 23 17 -2.6558 1.4987 2.8637 24 7 -0.4837 3.0083 2.7031 25 1 -0.3633 0.4327 0.9321 26 1 -0.3633 0.5911 -0.8408 27 1 -0.3634 -1.0236 -0.0915 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.9285 -0.0955 -2.8693 31 1 2.2250 1.8912 2.0007 32 1 1.0273 5.2097 4.6941 33 1 -0.8889 4.5980 6.1508 34 1 -2.5292 2.9241 5.3224 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161049013.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:24 Heat of formation + Delta-G solvation = -75.071802 kcal Electronic energy + Delta-G solvation = -21225.775196 eV Core-core repulsion = 17712.667769 eV Total energy + Delta-G solvation = -3513.107427 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.078 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.64991 -41.50515 -39.11009 -37.67220 -37.32803 -34.15010 -33.47783 -32.62187 -31.24457 -28.51157 -26.12746 -24.59523 -24.47078 -23.34888 -21.56998 -19.90707 -18.72828 -18.54846 -17.75043 -17.24946 -16.81968 -16.62853 -16.20918 -15.94368 -15.50993 -15.00461 -14.80636 -14.36411 -14.19927 -13.98725 -13.54898 -13.49383 -13.25174 -13.08846 -13.04430 -12.66047 -12.57560 -12.27951 -12.20388 -12.06529 -11.60549 -11.48233 -11.14199 -10.83345 -10.56670 -10.50891 -9.61556 -9.28310 -8.11103 -6.34116 -0.00474 0.31248 0.88696 1.40197 1.41900 1.50720 1.80076 2.38646 2.69171 3.03788 3.16654 3.48241 3.69142 3.96678 4.05168 4.24180 4.35670 4.45955 4.55813 4.73079 4.88896 4.92315 5.06145 5.12812 5.31655 5.40271 5.42568 5.54068 5.71778 5.85630 5.97479 6.09066 6.19251 6.58605 6.76001 6.88968 7.38494 8.87861 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.021756 B = 0.005285 C = 0.004604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.691488 B = 5296.727451 C = 6079.906898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.093 4.093 3 C 0.232 3.768 4 H 0.001 0.999 5 C -0.569 4.569 6 H 0.059 0.941 7 C 0.024 3.976 8 N -0.909 5.909 9 Si 0.957 3.043 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.268 1.268 13 N -0.692 5.692 14 C 0.433 3.567 15 H 0.120 0.880 16 F -0.211 7.211 17 O -0.321 6.321 18 C 0.307 3.693 19 C -0.182 4.182 20 C -0.021 4.021 21 C -0.182 4.182 22 C 0.185 3.815 23 Cl -0.042 7.042 24 N -0.519 5.519 25 H 0.057 0.943 26 H 0.022 0.978 27 H 0.040 0.960 28 H 0.064 0.936 29 H 0.029 0.971 30 H 0.264 0.736 31 H 0.350 0.650 32 H 0.170 0.830 33 H 0.199 0.801 34 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.428 7.299 15.757 19.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.132 4.132 3 C 0.124 3.876 4 H 0.019 0.981 5 C -0.608 4.608 6 H 0.078 0.922 7 C -0.177 4.177 8 N -0.547 5.547 9 Si 0.783 3.217 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.192 1.192 13 N -0.333 5.333 14 C 0.271 3.729 15 H 0.136 0.864 16 F -0.193 7.193 17 O -0.229 6.229 18 C 0.129 3.871 19 C -0.203 4.203 20 C -0.046 4.046 21 C -0.203 4.203 22 C 0.022 3.978 23 Cl -0.014 7.014 24 N -0.242 5.242 25 H 0.076 0.924 26 H 0.042 0.958 27 H 0.059 0.941 28 H 0.083 0.917 29 H 0.047 0.953 30 H 0.073 0.927 31 H 0.171 0.829 32 H 0.188 0.812 33 H 0.216 0.784 34 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -8.896 6.843 14.598 18.414 hybrid contribution 1.590 0.003 -0.424 1.645 sum -7.307 6.846 14.174 17.354 Atomic orbital electron populations 1.21504 0.96669 0.98916 1.00642 1.21286 0.93992 0.97828 1.00115 1.18865 0.91856 0.91607 0.85223 0.98061 1.22116 0.93061 1.38756 1.06854 0.92250 1.25683 1.02585 0.94344 0.95074 1.70022 1.36878 1.37624 1.10134 0.85580 0.80387 0.78621 0.77154 1.20181 1.21090 1.19218 1.60604 1.57514 1.05526 1.09630 1.22924 0.84566 0.88319 0.77106 0.86356 1.92875 1.55415 1.93249 1.77754 1.86608 1.43845 1.64293 1.28199 1.19939 0.86453 0.90878 0.89868 1.21583 1.02878 1.04342 0.91473 1.21890 0.89632 0.92688 1.00382 1.22100 1.03805 0.99918 0.94444 1.21658 0.90786 0.93850 0.91551 1.98398 1.56129 1.57040 1.89797 1.66618 1.04115 1.15419 1.38032 0.92399 0.95845 0.94108 0.91747 0.95259 0.92689 0.82926 0.81237 0.78382 0.80782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.33 9.72 71.98 0.70 -4.63 16 2 C -0.09 -4.64 5.44 30.59 0.17 -4.47 16 3 C 0.23 11.69 1.93 44.17 0.09 11.77 16 4 H 0.00 0.08 7.69 -2.39 -0.02 0.06 16 5 C -0.57 -29.92 8.29 25.60 0.21 -29.71 16 6 H 0.06 3.01 7.73 -2.91 -0.02 2.99 16 7 C 0.02 1.30 5.30 84.66 0.45 1.75 16 8 N -0.91 -51.46 11.30 21.45 0.24 -51.22 16 9 Si 0.96 42.31 29.54 68.60 2.03 44.33 16 10 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 11 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 12 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 13 N -0.69 -29.86 4.59 -609.42 -2.80 -32.65 16 14 C 0.43 17.54 4.28 127.69 0.55 18.09 16 15 H 0.12 4.81 7.78 -2.39 -0.02 4.79 16 16 F -0.21 -9.41 16.29 44.97 0.73 -8.68 16 17 O -0.32 -11.21 10.29 -89.90 -0.93 -12.13 16 18 C 0.31 9.65 7.12 84.78 0.60 10.26 16 19 C -0.18 -3.82 10.04 22.47 0.23 -3.60 16 20 C -0.02 -0.31 10.17 22.44 0.23 -0.08 16 21 C -0.18 -3.41 9.87 22.39 0.22 -3.19 16 22 C 0.19 5.27 7.27 84.65 0.62 5.89 16 23 Cl -0.04 -1.19 29.11 -2.72 -0.08 -1.27 16 24 N -0.52 -18.01 7.85 -299.79 -2.35 -20.36 16 25 H 0.06 2.54 7.84 -2.39 -0.02 2.52 16 26 H 0.02 1.06 8.14 -2.38 -0.02 1.04 16 27 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.06 3.55 6.00 -2.39 -0.01 3.54 16 29 H 0.03 1.42 8.14 -2.38 -0.02 1.40 16 30 H 0.26 14.24 8.31 -92.70 -0.77 13.47 16 31 H 0.35 14.72 8.40 -89.69 -0.75 13.97 16 32 H 0.17 2.63 8.06 -2.91 -0.02 2.61 16 33 H 0.20 0.94 8.06 -2.91 -0.02 0.92 16 34 H 0.17 2.10 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -64.02 312.05 1.27 -62.75 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: 0.38 Total: 17.15 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: 4.05 Total: 2.07 kcal Atomic # 7 Polarization: -99.33 SS G_CDS: -4.91 Total: -104.24 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: -0.93 Total: -12.13 kcal Atomic # 9 Polarization: -9.41 SS G_CDS: 0.73 Total: -8.68 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.33 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -0.08 Total: -1.27 kcal Total: -64.02 1.27 -62.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049013.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.321 kcal (2) G-P(sol) polarization free energy of solvation -64.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds