Wall clock time and date at job start Tue Mar 31 2020 06:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47146 * 2 1 4 4 H 1.09002 * 109.47087 * 305.39649 * 3 2 1 5 5 C 1.50703 * 109.47422 * 185.39617 * 3 2 1 6 6 H 1.08001 * 119.99895 * 245.01032 * 5 3 2 7 7 C 1.37875 * 120.00105 * 65.00713 * 5 3 2 8 8 N 1.31507 * 120.00344 * 197.59491 * 7 5 3 9 9 Si 1.86803 * 119.99808 * 17.59652 * 7 5 3 10 10 H 1.48501 * 109.47123 * 85.76654 * 9 7 5 11 11 H 1.48499 * 109.46873 * 205.76536 * 9 7 5 12 12 H 1.48494 * 109.47172 * 325.76897 * 9 7 5 13 13 N 1.46905 * 109.47251 * 65.39245 * 3 2 1 14 14 C 1.46898 * 111.00062 * 257.44380 * 13 3 2 15 15 H 1.09005 * 109.47607 * 44.56804 * 14 13 3 16 16 F 1.39906 * 109.46809 * 284.56923 * 14 13 3 17 17 O 1.42898 * 109.47327 * 164.56909 * 14 13 3 18 18 C 1.35930 * 116.99704 * 59.99774 * 17 14 13 19 19 C 1.39161 * 120.45767 * 179.72311 * 18 17 14 20 20 C 1.38499 * 118.39237 * 179.78076 * 19 18 17 21 21 C 1.38400 * 119.20689 * 0.51300 * 20 19 18 22 22 Cl 1.73604 * 119.57500 * 179.70129 * 21 20 19 23 23 N 1.31932 * 120.85253 * 359.72626 * 21 20 19 24 24 C 1.31875 * 121.76288 * 359.97438 * 23 21 20 25 25 H 1.09002 * 109.47493 * 55.24828 * 1 2 3 26 26 H 1.08997 * 109.47471 * 295.24339 * 1 2 3 27 27 H 1.09007 * 109.46852 * 175.24279 * 1 2 3 28 28 H 1.09004 * 109.47503 * 119.99720 * 2 1 3 29 29 H 1.09000 * 109.47301 * 239.99977 * 2 1 3 30 30 H 0.96992 * 120.00841 * 179.97438 * 8 7 5 31 31 H 1.00904 * 110.99193 * 21.39425 * 13 3 2 32 32 H 1.08005 * 120.80569 * 0.02562 * 19 18 17 33 33 H 1.07996 * 120.39681 * 180.23999 * 20 19 18 34 34 H 1.07998 * 119.64816 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5998 1.9835 -0.8377 5 6 3.5410 1.4447 -0.1336 6 1 4.1546 1.8138 0.6749 7 6 4.1311 0.9754 -1.2880 8 7 5.4054 0.6503 -1.2899 9 14 3.1204 0.8014 -2.8493 10 1 3.1022 2.0973 -3.5742 11 1 3.7244 -0.2422 -3.7161 12 1 1.7313 0.4108 -2.4989 13 7 1.6595 2.0965 1.2592 14 6 0.5084 2.9877 1.0627 15 1 -0.2412 2.4840 0.4524 16 9 0.9279 4.1556 0.4166 17 8 -0.0571 3.3223 2.3317 18 6 0.7516 3.9602 3.2187 19 6 0.2732 4.3248 4.4736 20 6 1.1353 4.9688 5.3455 21 6 2.4311 5.2363 4.9394 22 17 3.5175 6.0501 6.0217 23 7 2.8512 4.8813 3.7402 24 6 2.0629 4.2614 2.8839 25 1 -0.3634 0.5858 -0.8444 26 1 -0.3634 0.4382 0.9295 27 1 -0.3633 -1.0242 -0.0852 28 1 1.8934 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 5.8204 0.3198 -2.1018 31 1 1.4699 1.4141 1.9780 32 1 -0.7446 4.1072 4.7622 33 1 0.7992 5.2628 6.3288 34 1 2.4423 3.9867 1.9107 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161049796.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:26 Heat of formation + Delta-G solvation = -47.665831 kcal Electronic energy + Delta-G solvation = -21043.119344 eV Core-core repulsion = 17531.200330 eV Total energy + Delta-G solvation = -3511.919015 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.078 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -47.66723 -40.49065 -38.28693 -36.62620 -36.32836 -32.62468 -32.26581 -31.05920 -30.10964 -27.70226 -24.73519 -23.74628 -22.86165 -22.18823 -20.37616 -18.66358 -17.75021 -17.09556 -17.00655 -16.17874 -15.83734 -15.11836 -14.62427 -14.60012 -14.09313 -13.85060 -13.61645 -13.27061 -13.25138 -13.03303 -12.85937 -12.46307 -12.14677 -11.94417 -11.70684 -11.35319 -11.24787 -11.02092 -10.89289 -10.70115 -10.16247 -9.88502 -9.77962 -9.54183 -9.46204 -8.52590 -8.46787 -7.96463 -6.17250 -4.10678 1.00547 1.17183 1.89762 2.85764 3.19805 3.27536 3.32565 3.69569 4.10995 4.32928 4.59397 4.67751 4.68721 4.86321 5.05377 5.09427 5.31670 5.53023 5.54922 5.62019 5.69371 5.76335 5.89516 6.20783 6.23595 6.37809 6.47858 6.53516 6.84431 7.01215 7.30447 7.61024 7.78832 7.85189 8.49645 9.00419 9.46718 10.95541 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.020858 B = 0.004833 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.106391 B = 5791.820396 C = 6602.407374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.152 4.152 3 C 0.198 3.802 4 H 0.030 0.970 5 C -0.508 4.508 6 H 0.085 0.915 7 C 0.078 3.922 8 N -0.884 5.884 9 Si 0.856 3.144 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.258 1.258 13 N -0.706 5.706 14 C 0.404 3.596 15 H 0.123 0.877 16 F -0.195 7.195 17 O -0.320 6.320 18 C 0.073 3.927 19 C -0.097 4.097 20 C -0.132 4.132 21 C 0.139 3.861 22 Cl -0.042 7.042 23 N -0.446 5.446 24 C 0.084 3.916 25 H 0.047 0.953 26 H 0.044 0.956 27 H 0.049 0.951 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.265 0.735 31 H 0.359 0.641 32 H 0.148 0.852 33 H 0.147 0.853 34 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.819 4.966 10.099 17.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.192 4.192 3 C 0.091 3.909 4 H 0.048 0.952 5 C -0.546 4.546 6 H 0.103 0.897 7 C -0.125 4.125 8 N -0.520 5.520 9 Si 0.683 3.317 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.183 1.183 13 N -0.350 5.350 14 C 0.242 3.758 15 H 0.139 0.861 16 F -0.177 7.177 17 O -0.232 6.232 18 C 0.026 3.974 19 C -0.123 4.123 20 C -0.152 4.152 21 C -0.025 4.025 22 Cl -0.014 7.014 23 N -0.157 5.157 24 C -0.075 4.075 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.181 0.819 32 H 0.166 0.834 33 H 0.165 0.835 34 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -11.471 5.632 9.787 16.096 hybrid contribution -1.623 -0.843 -0.888 2.033 sum -13.094 4.789 8.899 16.540 Atomic orbital electron populations 1.22034 0.98470 1.01207 1.00310 1.22627 0.92660 1.00921 1.02951 1.19610 0.97944 0.88487 0.84892 0.95249 1.20800 0.88154 1.42362 1.03298 0.89742 1.24856 0.94768 0.94348 0.98512 1.69961 1.11892 1.42011 1.28181 0.87328 0.81511 0.78270 0.84574 1.20252 1.21319 1.18269 1.60771 1.34714 1.26193 1.13334 1.23556 0.91446 0.81971 0.78819 0.86080 1.92955 1.91937 1.51182 1.81587 1.86430 1.39755 1.72305 1.24716 1.20010 0.91628 0.95154 0.90614 1.20846 1.01039 0.99447 0.90965 1.21542 0.92036 1.00487 1.01172 1.21596 0.89521 0.99810 0.91610 1.98380 1.65446 1.77033 1.60539 1.67090 1.37244 1.09794 1.01552 1.24061 0.88575 0.94071 1.00758 0.93393 0.93698 0.93142 0.91761 0.91169 0.92505 0.81853 0.83390 0.83509 0.78034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 8.66 37.15 0.32 -2.05 16 2 C -0.15 -2.83 4.59 -26.73 -0.12 -2.95 16 3 C 0.20 4.11 1.67 -68.86 -0.11 4.00 16 4 H 0.03 0.63 6.23 -51.93 -0.32 0.31 16 5 C -0.51 -13.35 9.25 -34.44 -0.32 -13.67 16 6 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 7 C 0.08 2.14 5.30 -17.82 -0.09 2.04 16 8 N -0.88 -25.96 13.96 55.43 0.77 -25.19 16 9 Si 0.86 19.90 25.87 -169.99 -4.40 15.50 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.26 -5.46 5.65 56.52 0.32 -5.15 16 13 N -0.71 -12.60 3.88 -112.29 -0.44 -13.04 16 14 C 0.40 6.32 3.63 60.06 0.22 6.54 16 15 H 0.12 1.65 6.27 -51.93 -0.33 1.33 16 16 F -0.19 -3.49 15.45 2.25 0.03 -3.46 16 17 O -0.32 -4.61 10.33 -19.52 -0.20 -4.81 16 18 C 0.07 1.08 6.45 -39.09 -0.25 0.83 16 19 C -0.10 -1.15 10.13 -39.14 -0.40 -1.55 16 20 C -0.13 -1.54 9.87 -39.43 -0.39 -1.93 16 21 C 0.14 2.04 7.27 -17.45 -0.13 1.91 16 22 Cl -0.04 -0.55 29.10 -51.86 -1.51 -2.06 16 23 N -0.45 -7.89 10.33 -10.24 -0.11 -8.00 16 24 C 0.08 1.47 9.32 -17.38 -0.16 1.31 16 25 H 0.05 0.69 8.05 -51.93 -0.42 0.27 16 26 H 0.04 0.57 6.81 -51.93 -0.35 0.22 16 27 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 28 H 0.06 1.18 8.03 -51.93 -0.42 0.76 16 29 H 0.07 1.43 5.13 -51.93 -0.27 1.16 16 30 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.36 5.85 7.92 -39.29 -0.31 5.54 16 32 H 0.15 1.32 8.06 -52.48 -0.42 0.89 16 33 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 34 H 0.20 3.97 4.93 -52.49 -0.26 3.71 16 LS Contribution 298.90 15.07 4.50 4.50 Total: -1.00 -29.02 298.90 -6.36 -35.38 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -3.58 Total: 6.69 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -1.44 Total: -5.52 kcal Atomic # 7 Polarization: -46.45 SS G_CDS: 0.23 Total: -46.22 kcal Atomic # 8 Polarization: -4.61 SS G_CDS: -0.20 Total: -4.81 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.03 Total: -3.46 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -4.40 Total: 15.50 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.51 Total: -2.06 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.02 -6.36 -35.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049796.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.286 kcal (2) G-P(sol) polarization free energy of solvation -29.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds