Wall clock time and date at job start Tue Mar 31 2020 06:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47146 * 2 1 4 4 H 1.09002 * 109.47087 * 305.39649 * 3 2 1 5 5 C 1.50703 * 109.47422 * 185.39617 * 3 2 1 6 6 H 1.08001 * 119.99895 * 245.01032 * 5 3 2 7 7 C 1.37875 * 120.00105 * 65.00713 * 5 3 2 8 8 N 1.31507 * 120.00344 * 197.59491 * 7 5 3 9 9 Si 1.86803 * 119.99808 * 17.59652 * 7 5 3 10 10 H 1.48501 * 109.47123 * 85.76654 * 9 7 5 11 11 H 1.48499 * 109.46873 * 205.76536 * 9 7 5 12 12 H 1.48494 * 109.47172 * 325.76897 * 9 7 5 13 13 N 1.46905 * 109.47251 * 65.39245 * 3 2 1 14 14 C 1.46898 * 111.00062 * 257.44380 * 13 3 2 15 15 H 1.09005 * 109.47607 * 44.56804 * 14 13 3 16 16 F 1.39906 * 109.46809 * 284.56923 * 14 13 3 17 17 O 1.42898 * 109.47327 * 164.56909 * 14 13 3 18 18 C 1.35930 * 116.99704 * 59.99774 * 17 14 13 19 19 C 1.39161 * 120.45767 * 179.72311 * 18 17 14 20 20 C 1.38499 * 118.39237 * 179.78076 * 19 18 17 21 21 C 1.38400 * 119.20689 * 0.51300 * 20 19 18 22 22 Cl 1.73604 * 119.57500 * 179.70129 * 21 20 19 23 23 N 1.31932 * 120.85253 * 359.72626 * 21 20 19 24 24 C 1.31875 * 121.76288 * 359.97438 * 23 21 20 25 25 H 1.09002 * 109.47493 * 55.24828 * 1 2 3 26 26 H 1.08997 * 109.47471 * 295.24339 * 1 2 3 27 27 H 1.09007 * 109.46852 * 175.24279 * 1 2 3 28 28 H 1.09004 * 109.47503 * 119.99720 * 2 1 3 29 29 H 1.09000 * 109.47301 * 239.99977 * 2 1 3 30 30 H 0.96992 * 120.00841 * 179.97438 * 8 7 5 31 31 H 1.00904 * 110.99193 * 21.39425 * 13 3 2 32 32 H 1.08005 * 120.80569 * 0.02562 * 19 18 17 33 33 H 1.07996 * 120.39681 * 180.23999 * 20 19 18 34 34 H 1.07998 * 119.64816 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5998 1.9835 -0.8377 5 6 3.5410 1.4447 -0.1336 6 1 4.1546 1.8138 0.6749 7 6 4.1311 0.9754 -1.2880 8 7 5.4054 0.6503 -1.2899 9 14 3.1204 0.8014 -2.8493 10 1 3.1022 2.0973 -3.5742 11 1 3.7244 -0.2422 -3.7161 12 1 1.7313 0.4108 -2.4989 13 7 1.6595 2.0965 1.2592 14 6 0.5084 2.9877 1.0627 15 1 -0.2412 2.4840 0.4524 16 9 0.9279 4.1556 0.4166 17 8 -0.0571 3.3223 2.3317 18 6 0.7516 3.9602 3.2187 19 6 0.2732 4.3248 4.4736 20 6 1.1353 4.9688 5.3455 21 6 2.4311 5.2363 4.9394 22 17 3.5175 6.0501 6.0217 23 7 2.8512 4.8813 3.7402 24 6 2.0629 4.2614 2.8839 25 1 -0.3634 0.5858 -0.8444 26 1 -0.3634 0.4382 0.9295 27 1 -0.3633 -1.0242 -0.0852 28 1 1.8934 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 5.8204 0.3198 -2.1018 31 1 1.4699 1.4141 1.9780 32 1 -0.7446 4.1072 4.7622 33 1 0.7992 5.2628 6.3288 34 1 2.4423 3.9867 1.9107 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161049796.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:26 Heat of formation + Delta-G solvation = -68.929501 kcal Electronic energy + Delta-G solvation = -21044.041406 eV Core-core repulsion = 17531.200330 eV Total energy + Delta-G solvation = -3512.841077 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.078 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.99254 -41.62599 -39.48836 -38.04397 -37.46514 -34.41591 -33.59255 -32.38785 -31.25103 -29.39381 -26.12696 -24.85306 -24.34399 -23.43469 -21.95102 -19.91809 -19.15242 -18.60632 -18.18479 -17.68870 -17.03470 -16.65371 -16.15855 -15.81395 -15.34172 -15.26095 -14.90720 -14.64579 -14.45758 -14.34046 -14.12331 -13.95821 -13.57417 -13.40032 -13.01558 -12.65421 -12.54075 -12.44658 -12.35252 -12.28773 -11.73049 -11.50588 -11.36517 -10.91313 -10.63593 -10.55545 -9.72147 -9.33228 -8.28022 -6.25197 -0.10300 0.11560 0.81910 1.34145 1.40157 1.45909 1.69750 2.35564 2.55379 2.79035 3.04775 3.43291 3.51510 3.60132 3.89407 4.00816 4.14103 4.26178 4.31302 4.41854 4.48859 4.66619 4.68735 4.91832 4.98393 5.08958 5.18061 5.27191 5.45815 5.65471 5.72777 5.75935 6.37011 6.55709 6.69931 6.80918 7.35990 8.89337 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.020858 B = 0.004833 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.106391 B = 5791.820396 C = 6602.407374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.149 4.149 3 C 0.206 3.794 4 H 0.032 0.968 5 C -0.510 4.510 6 H 0.030 0.970 7 C 0.018 3.982 8 N -0.941 5.941 9 Si 0.923 3.077 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.218 1.218 13 N -0.719 5.719 14 C 0.406 3.594 15 H 0.155 0.845 16 F -0.212 7.212 17 O -0.305 6.305 18 C 0.064 3.936 19 C -0.078 4.078 20 C -0.113 4.113 21 C 0.122 3.878 22 Cl -0.035 7.035 23 N -0.488 5.488 24 C 0.056 3.944 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.264 0.736 31 H 0.367 0.633 32 H 0.191 0.809 33 H 0.190 0.810 34 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.976 4.823 11.064 20.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.188 4.188 3 C 0.098 3.902 4 H 0.050 0.950 5 C -0.549 4.549 6 H 0.048 0.952 7 C -0.180 4.180 8 N -0.581 5.581 9 Si 0.747 3.253 10 H -0.207 1.207 11 H -0.216 1.216 12 H -0.141 1.141 13 N -0.364 5.364 14 C 0.244 3.756 15 H 0.172 0.828 16 F -0.194 7.194 17 O -0.217 6.217 18 C 0.017 3.983 19 C -0.104 4.104 20 C -0.133 4.133 21 C -0.042 4.042 22 Cl -0.007 7.007 23 N -0.200 5.200 24 C -0.102 4.102 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.191 0.809 32 H 0.209 0.791 33 H 0.207 0.793 34 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -15.666 5.491 10.773 19.790 hybrid contribution -0.246 -0.701 -0.974 1.226 sum -15.912 4.790 9.798 19.291 Atomic orbital electron populations 1.21959 0.94500 1.02973 1.01842 1.22440 0.96108 0.98299 1.01956 1.19336 0.94124 0.90484 0.86287 0.95002 1.21103 0.91284 1.40875 1.01612 0.95159 1.25735 0.95830 0.94240 1.02191 1.70128 1.14381 1.44509 1.29092 0.86246 0.81822 0.77805 0.79438 1.20654 1.21617 1.14051 1.60424 1.37147 1.26479 1.12325 1.23756 0.91067 0.81039 0.79691 0.82843 1.92929 1.92214 1.52243 1.81989 1.86439 1.38885 1.72260 1.24144 1.20133 0.90731 0.95598 0.91868 1.21345 1.02689 0.97319 0.89063 1.22014 0.90288 0.98357 1.02619 1.21995 0.91057 1.00160 0.91028 1.98378 1.65610 1.76852 1.59837 1.66909 1.38693 1.11181 1.03193 1.23565 0.90171 0.96352 1.00104 0.92520 0.91648 0.91210 0.92254 0.92907 0.92676 0.80936 0.79145 0.79274 0.81362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.85 8.66 71.98 0.62 -3.23 16 2 C -0.15 -5.25 4.59 30.59 0.14 -5.11 16 3 C 0.21 8.48 1.67 44.17 0.07 8.56 16 4 H 0.03 1.32 6.23 -2.39 -0.01 1.30 16 5 C -0.51 -28.08 9.25 25.60 0.24 -27.85 16 6 H 0.03 1.94 8.06 -2.91 -0.02 1.91 16 7 C 0.02 1.02 5.30 84.66 0.45 1.47 16 8 N -0.94 -58.28 13.96 21.45 0.30 -57.98 16 9 Si 0.92 41.46 25.87 68.60 1.77 43.23 16 10 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 12 H -0.22 -8.32 5.65 99.48 0.56 -7.76 16 13 N -0.72 -25.54 3.88 -609.38 -2.36 -27.90 16 14 C 0.41 12.00 3.63 127.69 0.46 12.46 16 15 H 0.16 3.60 6.27 -2.38 -0.01 3.58 16 16 F -0.21 -7.54 15.45 44.97 0.69 -6.85 16 17 O -0.31 -8.00 10.33 -92.76 -0.96 -8.96 16 18 C 0.06 1.78 6.45 22.59 0.15 1.92 16 19 C -0.08 -1.56 10.13 22.55 0.23 -1.33 16 20 C -0.11 -2.24 9.87 22.37 0.22 -2.02 16 21 C 0.12 3.46 7.27 84.72 0.62 4.07 16 22 Cl -0.04 -0.88 29.10 -2.72 -0.08 -0.96 16 23 N -0.49 -17.72 10.33 -186.32 -1.93 -19.65 16 24 C 0.06 2.00 9.32 84.79 0.79 2.79 16 25 H 0.06 1.33 8.05 -2.39 -0.02 1.31 16 26 H 0.06 1.36 6.81 -2.39 -0.02 1.34 16 27 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 28 H 0.06 2.12 8.03 -2.38 -0.02 2.10 16 29 H 0.05 2.04 5.13 -2.39 -0.01 2.02 16 30 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 31 H 0.37 11.71 7.92 -89.69 -0.71 11.00 16 32 H 0.19 2.20 8.06 -2.91 -0.02 2.18 16 33 H 0.19 2.15 8.06 -2.91 -0.02 2.12 16 34 H 0.17 7.08 4.93 -2.91 -0.01 7.07 16 Total: -1.00 -69.14 298.90 1.72 -67.41 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: 0.29 Total: 19.91 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: 3.99 Total: -8.26 kcal Atomic # 7 Polarization: -101.53 SS G_CDS: -3.99 Total: -105.52 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: -0.96 Total: -8.96 kcal Atomic # 9 Polarization: -7.54 SS G_CDS: 0.69 Total: -6.85 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 1.77 Total: 43.23 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -0.08 Total: -0.96 kcal Total: -69.14 1.72 -67.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049796.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.515 kcal (2) G-P(sol) polarization free energy of solvation -69.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds