Wall clock time and date at job start Tue Mar 31 2020 06:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47016 * 2 1 4 4 H 1.08995 * 109.47515 * 302.96674 * 3 2 1 5 5 C 1.50704 * 109.47067 * 182.96603 * 3 2 1 6 6 H 1.08003 * 119.99692 * 240.00318 * 5 3 2 7 7 C 1.37878 * 119.99891 * 60.00239 * 5 3 2 8 8 N 1.31511 * 120.00019 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99580 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47072 * 90.00153 * 9 7 5 11 11 H 1.48498 * 109.46769 * 209.99885 * 9 7 5 12 12 H 1.48493 * 109.47343 * 329.99677 * 9 7 5 13 13 N 1.46900 * 109.47059 * 62.96529 * 3 2 1 14 14 C 1.46898 * 111.00268 * 205.47804 * 13 3 2 15 15 H 1.09003 * 109.46906 * 315.41822 * 14 13 3 16 16 F 1.39895 * 109.47278 * 75.41913 * 14 13 3 17 17 O 1.42900 * 109.47451 * 195.42063 * 14 13 3 18 18 C 1.35931 * 116.99706 * 300.00245 * 17 14 13 19 19 C 1.39162 * 120.45965 * 179.97438 * 18 17 14 20 20 C 1.38493 * 118.39611 * 179.97438 * 19 18 17 21 21 C 1.38412 * 119.20655 * 0.02562 * 20 19 18 22 22 Cl 1.73597 * 119.57529 * 179.97438 * 21 20 19 23 23 N 1.31930 * 120.85145 * 0.25179 * 21 20 19 24 24 C 1.31884 * 121.76004 * 359.48113 * 23 21 20 25 25 H 1.08992 * 109.47096 * 294.61465 * 1 2 3 26 26 H 1.09001 * 109.46584 * 54.61625 * 1 2 3 27 27 H 1.08997 * 109.47354 * 174.60958 * 1 2 3 28 28 H 1.09002 * 109.47152 * 240.00632 * 2 1 3 29 29 H 1.09000 * 109.46810 * 120.00329 * 2 1 3 30 30 H 0.97003 * 119.99977 * 179.97438 * 8 7 5 31 31 H 1.00905 * 110.99814 * 81.52592 * 13 3 2 32 32 H 1.07999 * 120.80101 * 359.95993 * 19 18 17 33 33 H 1.07990 * 120.40119 * 180.02562 * 20 19 18 34 34 H 1.07999 * 119.64741 * 180.26651 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6340 1.9715 -0.8621 5 6 3.5453 1.4431 -0.0735 6 1 4.1243 1.8970 0.7172 7 6 4.1831 0.8644 -1.1502 8 7 3.4780 0.3113 -2.1127 9 14 6.0489 0.8646 -1.2409 10 1 6.5764 -0.3599 -0.5871 11 1 6.4753 0.8891 -2.6631 12 1 6.5783 2.0647 -0.5447 13 7 1.6097 2.1140 1.2337 14 6 1.5260 3.5677 1.0401 15 1 2.4076 3.9138 0.5006 16 9 0.3776 3.8746 0.3024 17 8 1.4617 4.2148 2.3126 18 6 0.4142 3.8925 3.1166 19 6 0.2813 4.4793 4.3714 20 6 -0.8026 4.1201 5.1550 21 6 -1.7110 3.1960 4.6686 22 17 -3.0728 2.7383 5.6431 23 7 -1.5522 2.6543 3.4761 24 6 -0.5364 2.9740 2.6981 25 1 -0.3633 0.4280 0.9342 26 1 -0.3632 0.5951 -0.8379 27 1 -0.3634 -1.0231 -0.0965 28 1 1.8934 -0.5137 -0.8901 29 1 1.8933 -0.5139 0.8900 30 1 3.9267 -0.0955 -2.8704 31 1 2.2228 1.8862 2.0020 32 1 1.0061 5.1974 4.7256 33 1 -0.9376 4.5558 6.1339 34 1 -0.4420 2.5126 1.7262 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161049797.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:27 Heat of formation + Delta-G solvation = -75.342807 kcal Electronic energy + Delta-G solvation = -21000.298915 eV Core-core repulsion = 17487.179737 eV Total energy + Delta-G solvation = -3513.119178 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.078 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.96121 -41.59617 -39.36792 -37.72753 -37.43109 -34.24942 -33.51039 -32.58059 -31.16212 -28.60389 -26.11384 -24.80623 -24.55034 -23.43826 -21.62160 -19.86863 -18.80511 -18.59173 -18.15464 -17.82311 -16.82233 -16.70341 -16.06207 -15.80784 -15.15615 -14.99802 -14.83191 -14.57160 -14.33480 -14.24941 -14.09651 -13.63287 -13.35094 -13.16631 -13.07469 -12.71876 -12.58960 -12.41212 -12.28402 -12.09622 -11.61443 -11.53629 -11.16633 -10.89567 -10.63496 -10.50940 -9.72517 -9.34714 -8.12474 -6.33754 -0.08460 0.11540 0.82742 1.41585 1.44825 1.52107 1.75956 2.39388 2.57048 2.90402 3.14546 3.51642 3.61000 3.65181 3.90575 4.05847 4.25569 4.49823 4.55150 4.67183 4.70475 4.86563 4.91930 5.04124 5.24017 5.37507 5.39562 5.53222 5.67514 5.73765 5.93725 6.01280 6.15545 6.50523 6.67807 6.84677 7.39013 8.87306 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.026414 B = 0.004238 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.803287 B = 6605.618596 C = 7065.940357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.099 4.099 3 C 0.229 3.771 4 H 0.013 0.987 5 C -0.569 4.569 6 H 0.063 0.937 7 C 0.027 3.973 8 N -0.907 5.907 9 Si 0.953 3.047 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.267 1.267 13 N -0.713 5.713 14 C 0.415 3.585 15 H 0.136 0.864 16 F -0.211 7.211 17 O -0.312 6.312 18 C 0.062 3.938 19 C -0.084 4.084 20 C -0.112 4.112 21 C 0.122 3.878 22 Cl -0.032 7.032 23 N -0.478 5.478 24 C 0.057 3.943 25 H 0.052 0.948 26 H 0.032 0.968 27 H 0.044 0.956 28 H 0.067 0.933 29 H 0.032 0.968 30 H 0.264 0.736 31 H 0.362 0.638 32 H 0.183 0.817 33 H 0.188 0.812 34 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.792 7.991 13.385 16.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.138 4.138 3 C 0.121 3.879 4 H 0.031 0.969 5 C -0.608 4.608 6 H 0.081 0.919 7 C -0.175 4.175 8 N -0.545 5.545 9 Si 0.780 3.220 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.191 1.191 13 N -0.356 5.356 14 C 0.254 3.746 15 H 0.152 0.848 16 F -0.192 7.192 17 O -0.224 6.224 18 C 0.015 3.985 19 C -0.111 4.111 20 C -0.132 4.132 21 C -0.042 4.042 22 Cl -0.004 7.004 23 N -0.190 5.190 24 C -0.101 4.101 25 H 0.071 0.929 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.085 0.915 29 H 0.051 0.949 30 H 0.073 0.927 31 H 0.185 0.815 32 H 0.201 0.799 33 H 0.205 0.795 34 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -7.030 7.332 12.904 16.423 hybrid contribution 2.094 0.225 -0.489 2.162 sum -4.936 7.558 12.415 15.350 Atomic orbital electron populations 1.21597 0.96708 0.99709 1.00493 1.21355 0.93943 0.97852 1.00659 1.18946 0.92215 0.91650 0.85049 0.96921 1.22082 0.92970 1.38838 1.06864 0.91916 1.25622 1.02258 0.94393 0.95186 1.69997 1.36796 1.37525 1.10135 0.85630 0.80777 0.78583 0.77057 1.20436 1.21327 1.19146 1.60875 1.58284 1.05486 1.10924 1.23324 0.85577 0.88278 0.77456 0.84779 1.92888 1.55347 1.93132 1.77876 1.86479 1.43819 1.64641 1.27497 1.20251 0.89024 0.96525 0.92729 1.21315 0.99186 1.00457 0.90093 1.21980 0.92200 0.96516 1.02519 1.21942 0.92815 0.97654 0.91811 1.98380 1.43017 1.92254 1.66707 1.66939 1.22136 1.25102 1.04839 1.23584 0.89526 0.96232 1.00761 0.92898 0.94904 0.93739 0.91452 0.94869 0.92687 0.81538 0.79927 0.79511 0.80680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.08 9.71 71.98 0.70 -4.39 16 2 C -0.10 -4.50 5.44 30.60 0.17 -4.33 16 3 C 0.23 10.36 1.93 44.17 0.09 10.44 16 4 H 0.01 0.66 7.69 -2.39 -0.02 0.64 16 5 C -0.57 -27.68 8.27 25.60 0.21 -27.47 16 6 H 0.06 2.93 7.73 -2.91 -0.02 2.91 16 7 C 0.03 1.36 5.30 84.66 0.45 1.81 16 8 N -0.91 -48.70 11.30 21.45 0.24 -48.46 16 9 Si 0.95 40.37 29.54 68.60 2.03 42.39 16 10 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 11 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 12 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 13 N -0.71 -26.56 3.52 -609.42 -2.15 -28.71 16 14 C 0.42 14.30 4.23 127.69 0.54 14.84 16 15 H 0.14 4.62 7.77 -2.39 -0.02 4.60 16 16 F -0.21 -7.86 15.34 44.97 0.69 -7.17 16 17 O -0.31 -9.45 10.33 -92.77 -0.96 -10.41 16 18 C 0.06 1.77 6.45 22.59 0.15 1.92 16 19 C -0.08 -1.78 10.13 22.55 0.23 -1.55 16 20 C -0.11 -2.19 9.87 22.37 0.22 -1.97 16 21 C 0.12 3.19 7.27 84.72 0.62 3.80 16 22 Cl -0.03 -0.72 29.10 -2.72 -0.08 -0.80 16 23 N -0.48 -15.54 10.33 -186.31 -1.93 -17.46 16 24 C 0.06 1.88 9.32 84.78 0.79 2.67 16 25 H 0.05 2.04 7.21 -2.39 -0.02 2.02 16 26 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.07 3.46 6.00 -2.39 -0.01 3.44 16 29 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.26 13.61 8.31 -92.71 -0.77 12.84 16 31 H 0.36 13.07 8.41 -89.69 -0.75 12.32 16 32 H 0.18 2.59 8.06 -2.91 -0.02 2.56 16 33 H 0.19 2.12 8.06 -2.92 -0.02 2.10 16 34 H 0.18 6.50 4.30 -2.91 -0.01 6.49 16 Total: -1.00 -55.66 306.67 2.39 -53.27 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: 0.39 Total: 21.57 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: 4.15 Total: -4.22 kcal Atomic # 7 Polarization: -90.80 SS G_CDS: -3.83 Total: -94.63 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: -0.96 Total: -10.41 kcal Atomic # 9 Polarization: -7.86 SS G_CDS: 0.69 Total: -7.17 kcal Atomic # 14 Polarization: 40.37 SS G_CDS: 2.03 Total: 42.39 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -0.08 Total: -0.80 kcal Total: -55.66 2.39 -53.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049797.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.076 kcal (2) G-P(sol) polarization free energy of solvation -55.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds