Wall clock time and date at job start Tue Mar 31 2020 06:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46897 * 109.47192 * 2 1 4 4 C 1.46899 * 111.00057 * 165.24639 * 3 2 1 5 5 C 1.50700 * 109.47252 * 288.35793 * 4 3 2 6 6 H 1.08006 * 119.99693 * 4.42356 * 5 4 3 7 7 C 1.37879 * 120.00330 * 184.42913 * 5 4 3 8 8 N 1.31516 * 119.99811 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00159 * 179.97438 * 7 5 4 10 10 H 1.48510 * 109.47124 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47035 * 119.99605 * 9 7 5 12 12 H 1.48490 * 109.47379 * 239.99777 * 9 7 5 13 13 C 1.46897 * 110.99857 * 289.19875 * 3 2 1 14 14 H 1.09005 * 109.47001 * 185.89030 * 13 3 2 15 15 F 1.39897 * 109.47333 * 65.89185 * 13 3 2 16 16 O 1.42902 * 109.47146 * 305.89054 * 13 3 2 17 17 C 1.35939 * 116.99782 * 193.86136 * 16 13 3 18 18 C 1.39157 * 120.45650 * 180.65955 * 17 16 13 19 19 C 1.38496 * 118.39059 * 179.78319 * 18 17 16 20 20 C 1.38410 * 119.20804 * 0.50948 * 19 18 17 21 21 Cl 1.73596 * 119.57375 * 179.70780 * 20 19 18 22 22 N 1.31925 * 120.85088 * 359.72418 * 20 19 18 23 23 C 1.31884 * 121.76488 * 0.02562 * 22 20 19 24 24 H 1.09007 * 109.47170 * 186.91090 * 1 2 3 25 25 H 1.08999 * 109.47477 * 306.90741 * 1 2 3 26 26 H 1.09000 * 109.47294 * 66.91010 * 1 2 3 27 27 H 1.09003 * 109.47176 * 239.99730 * 2 1 3 28 28 H 1.09004 * 109.47285 * 119.99863 * 2 1 3 29 29 H 1.09002 * 109.47336 * 48.35680 * 4 3 2 30 30 H 1.09006 * 109.47173 * 168.35835 * 4 3 2 31 31 H 0.96995 * 119.99680 * 180.02562 * 8 7 5 32 32 H 1.08004 * 120.80387 * 359.97438 * 18 17 16 33 33 H 1.08000 * 120.39747 * 180.24049 * 19 18 17 34 34 H 1.07996 * 119.65238 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4455 1.4392 0.3492 5 6 3.6162 1.1267 1.8136 6 1 2.7612 0.8397 2.4077 7 6 4.8639 1.2072 2.3948 8 7 5.9051 1.5564 1.6711 9 14 5.0755 0.8205 4.2100 10 1 3.7599 0.4568 4.7952 11 1 6.0189 -0.3155 4.3674 12 1 5.6156 2.0132 4.9105 13 6 1.7699 2.0316 -1.2951 14 1 2.2338 3.0180 -1.3042 15 9 0.3912 2.1628 -1.4927 16 8 2.3272 1.2335 -2.3413 17 6 2.4444 1.8142 -3.5648 18 6 2.9649 1.0982 -4.6385 19 6 3.0609 1.7304 -5.8671 20 6 2.6492 3.0467 -5.9833 21 17 2.7724 3.8507 -7.5169 22 7 2.1647 3.6983 -4.9435 23 6 2.0527 3.1300 -3.7587 24 1 -0.3634 -1.0203 0.1237 25 1 -0.3634 0.6171 0.8217 26 1 -0.3634 0.4030 -0.9453 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.9932 0.7075 -0.2447 30 1 3.8323 2.4373 0.1432 31 1 6.7829 1.6127 2.0800 32 1 3.2834 0.0733 -4.5175 33 1 3.4563 1.2039 -6.7231 34 1 1.6516 3.6956 -2.9307 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165047595.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:25 Heat of formation + Delta-G solvation = -50.290498 kcal Electronic energy + Delta-G solvation = -20703.654505 eV Core-core repulsion = 17191.621676 eV Total energy + Delta-G solvation = -3512.032829 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.078 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -47.68577 -40.68089 -38.39478 -36.73223 -36.11586 -32.79867 -32.64923 -30.45300 -30.04012 -27.28499 -25.02424 -23.67410 -23.06742 -22.59584 -20.55952 -18.82565 -17.47407 -17.25006 -17.03702 -16.30630 -15.64007 -15.09989 -14.87555 -14.58782 -14.30191 -13.82297 -13.51117 -13.35032 -13.17168 -13.04321 -12.81131 -12.50551 -12.22849 -11.87944 -11.48649 -11.42682 -11.20764 -10.94743 -10.84280 -10.66920 -10.18825 -10.08707 -10.02869 -9.76454 -9.50138 -8.64395 -8.55752 -8.02763 -6.19510 -4.22555 0.77165 0.97233 1.69510 2.86166 3.22999 3.31029 3.35422 3.43888 4.10316 4.26205 4.33672 4.41689 4.63508 4.73721 4.93174 5.17060 5.18161 5.33657 5.51162 5.62000 5.72434 5.80764 5.96930 6.08531 6.32043 6.48843 6.66873 6.86261 7.03517 7.05806 7.43274 7.50237 7.65485 7.86120 8.16553 8.83576 9.42418 10.91313 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.022874 B = 0.003901 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.811749 B = 7176.277225 C = 7918.198457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.048 3.952 3 N -0.506 5.506 4 C 0.191 3.809 5 C -0.513 4.513 6 H 0.068 0.932 7 C 0.059 3.941 8 N -0.895 5.895 9 Si 0.903 3.097 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.392 3.608 14 H 0.112 0.888 15 F -0.198 7.198 16 O -0.337 6.337 17 C 0.102 3.898 18 C -0.095 4.095 19 C -0.113 4.113 20 C 0.131 3.869 21 Cl -0.037 7.037 22 N -0.440 5.440 23 C 0.040 3.960 24 H 0.049 0.951 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.042 0.958 28 H 0.092 0.908 29 H 0.008 0.992 30 H 0.037 0.963 31 H 0.264 0.736 32 H 0.154 0.846 33 H 0.152 0.848 34 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.405 -0.508 -13.601 15.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.079 4.079 3 N -0.238 5.238 4 C 0.067 3.933 5 C -0.552 4.552 6 H 0.086 0.914 7 C -0.143 4.143 8 N -0.533 5.533 9 Si 0.730 3.270 10 H -0.195 1.195 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.230 3.770 14 H 0.129 0.871 15 F -0.180 7.180 16 O -0.248 6.248 17 C 0.052 3.948 18 C -0.122 4.122 19 C -0.134 4.134 20 C -0.034 4.034 21 Cl -0.009 7.009 22 N -0.152 5.152 23 C -0.119 4.119 24 H 0.068 0.932 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.060 0.940 28 H 0.110 0.890 29 H 0.026 0.974 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.172 0.828 33 H 0.169 0.831 34 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -6.702 0.516 -13.391 14.984 hybrid contribution 0.803 -1.090 0.407 1.414 sum -5.899 -0.575 -12.984 14.273 Atomic orbital electron populations 1.22023 0.95694 1.00794 1.02743 1.22041 0.94962 0.88633 1.02284 1.63414 1.24464 1.19225 1.16672 1.19871 0.78247 0.97861 0.97346 1.21060 0.94041 1.46666 0.93418 0.91421 1.24974 0.95670 0.95047 0.98642 1.69957 0.99621 1.47596 1.36150 0.86363 0.78278 0.77998 0.84358 1.19514 1.20952 1.20854 1.23936 0.75231 0.95947 0.81869 0.87143 1.92871 1.34014 1.96135 1.94960 1.86469 1.76392 1.45103 1.16875 1.20028 0.95466 0.92755 0.86567 1.21003 0.99859 1.01518 0.89782 1.21671 0.99922 0.93342 0.98466 1.21454 1.02348 0.90509 0.89044 1.98387 1.96475 1.80999 1.25047 1.66838 1.12009 1.37840 0.98466 1.22865 1.02102 0.91974 0.94922 0.93224 0.92096 0.92217 0.93998 0.88999 0.97421 0.94523 0.92668 0.82784 0.83072 0.81544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 9.43 37.15 0.35 -2.11 16 2 C 0.05 0.89 5.43 -3.83 -0.02 0.87 16 3 N -0.51 -10.32 4.61 -241.02 -1.11 -11.43 16 4 C 0.19 4.61 4.53 -4.98 -0.02 4.59 16 5 C -0.51 -13.57 8.46 -34.44 -0.29 -13.86 16 6 H 0.07 1.78 7.46 -52.48 -0.39 1.38 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.89 -25.27 13.29 55.43 0.74 -24.54 16 9 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 10 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 C 0.39 6.83 2.95 60.06 0.18 7.01 16 14 H 0.11 1.80 6.48 -51.93 -0.34 1.46 16 15 F -0.20 -3.31 13.89 2.25 0.03 -3.28 16 16 O -0.34 -5.71 8.76 -19.55 -0.17 -5.88 16 17 C 0.10 1.50 6.67 -39.09 -0.26 1.24 16 18 C -0.10 -1.17 10.13 -39.15 -0.40 -1.57 16 19 C -0.11 -1.25 9.87 -39.42 -0.39 -1.64 16 20 C 0.13 1.70 7.27 -17.45 -0.13 1.57 16 21 Cl -0.04 -0.42 29.10 -51.86 -1.51 -1.93 16 22 N -0.44 -6.49 10.33 -10.24 -0.11 -6.60 16 23 C 0.04 0.58 10.02 -17.38 -0.17 0.40 16 24 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 25 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.06 0.94 5.98 -51.93 -0.31 0.63 16 27 H 0.04 0.77 7.08 -51.93 -0.37 0.40 16 28 H 0.09 1.82 6.96 -51.93 -0.36 1.46 16 29 H 0.01 0.20 8.06 -51.93 -0.42 -0.21 16 30 H 0.04 0.94 7.82 -51.93 -0.41 0.53 16 31 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.15 1.60 8.06 -52.48 -0.42 1.18 16 33 H 0.15 1.18 8.06 -52.49 -0.42 0.75 16 34 H 0.17 2.24 5.94 -52.49 -0.31 1.93 16 LS Contribution 307.53 15.07 4.63 4.63 Total: -1.00 -28.58 307.53 -7.50 -36.08 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -3.73 Total: -0.74 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: -1.25 Total: -1.99 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: -0.48 Total: -42.56 kcal Atomic # 8 Polarization: -5.71 SS G_CDS: -0.17 Total: -5.88 kcal Atomic # 9 Polarization: -3.31 SS G_CDS: 0.03 Total: -3.28 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -1.51 Total: -1.93 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -28.58 -7.50 -36.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165047595.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.211 kcal (2) G-P(sol) polarization free energy of solvation -28.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds