Wall clock time and date at job start Tue Mar 31 2020 06:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46897 * 109.47192 * 2 1 4 4 C 1.46899 * 111.00057 * 165.24639 * 3 2 1 5 5 C 1.50700 * 109.47252 * 288.35793 * 4 3 2 6 6 H 1.08006 * 119.99693 * 4.42356 * 5 4 3 7 7 C 1.37879 * 120.00330 * 184.42913 * 5 4 3 8 8 N 1.31516 * 119.99811 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00159 * 179.97438 * 7 5 4 10 10 H 1.48510 * 109.47124 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47035 * 119.99605 * 9 7 5 12 12 H 1.48490 * 109.47379 * 239.99777 * 9 7 5 13 13 C 1.46897 * 110.99857 * 289.19875 * 3 2 1 14 14 H 1.09005 * 109.47001 * 185.89030 * 13 3 2 15 15 F 1.39897 * 109.47333 * 65.89185 * 13 3 2 16 16 O 1.42902 * 109.47146 * 305.89054 * 13 3 2 17 17 C 1.35939 * 116.99782 * 193.86136 * 16 13 3 18 18 C 1.39157 * 120.45650 * 180.65955 * 17 16 13 19 19 C 1.38496 * 118.39059 * 179.78319 * 18 17 16 20 20 C 1.38410 * 119.20804 * 0.50948 * 19 18 17 21 21 Cl 1.73596 * 119.57375 * 179.70780 * 20 19 18 22 22 N 1.31925 * 120.85088 * 359.72418 * 20 19 18 23 23 C 1.31884 * 121.76488 * 0.02562 * 22 20 19 24 24 H 1.09007 * 109.47170 * 186.91090 * 1 2 3 25 25 H 1.08999 * 109.47477 * 306.90741 * 1 2 3 26 26 H 1.09000 * 109.47294 * 66.91010 * 1 2 3 27 27 H 1.09003 * 109.47176 * 239.99730 * 2 1 3 28 28 H 1.09004 * 109.47285 * 119.99863 * 2 1 3 29 29 H 1.09002 * 109.47336 * 48.35680 * 4 3 2 30 30 H 1.09006 * 109.47173 * 168.35835 * 4 3 2 31 31 H 0.96995 * 119.99680 * 180.02562 * 8 7 5 32 32 H 1.08004 * 120.80387 * 359.97438 * 18 17 16 33 33 H 1.08000 * 120.39747 * 180.24049 * 19 18 17 34 34 H 1.07996 * 119.65238 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4455 1.4392 0.3492 5 6 3.6162 1.1267 1.8136 6 1 2.7612 0.8397 2.4077 7 6 4.8639 1.2072 2.3948 8 7 5.9051 1.5564 1.6711 9 14 5.0755 0.8205 4.2100 10 1 3.7599 0.4568 4.7952 11 1 6.0189 -0.3155 4.3674 12 1 5.6156 2.0132 4.9105 13 6 1.7699 2.0316 -1.2951 14 1 2.2338 3.0180 -1.3042 15 9 0.3912 2.1628 -1.4927 16 8 2.3272 1.2335 -2.3413 17 6 2.4444 1.8142 -3.5648 18 6 2.9649 1.0982 -4.6385 19 6 3.0609 1.7304 -5.8671 20 6 2.6492 3.0467 -5.9833 21 17 2.7724 3.8507 -7.5169 22 7 2.1647 3.6983 -4.9435 23 6 2.0527 3.1300 -3.7587 24 1 -0.3634 -1.0203 0.1237 25 1 -0.3634 0.6171 0.8217 26 1 -0.3634 0.4030 -0.9453 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.9932 0.7075 -0.2447 30 1 3.8323 2.4373 0.1432 31 1 6.7829 1.6127 2.0800 32 1 3.2834 0.0733 -4.5175 33 1 3.4563 1.2039 -6.7231 34 1 1.6516 3.6956 -2.9307 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165047595.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:25 Heat of formation + Delta-G solvation = -69.193404 kcal Electronic energy + Delta-G solvation = -20704.474196 eV Core-core repulsion = 17191.621676 eV Total energy + Delta-G solvation = -3512.852520 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.078 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.06305 -41.77359 -39.67320 -37.92258 -37.42976 -34.75767 -33.69741 -31.86093 -31.25190 -29.07925 -26.42480 -24.84613 -24.37462 -24.20532 -22.06172 -20.04808 -18.81060 -18.66188 -18.28864 -17.91722 -17.10259 -16.51637 -16.24868 -15.95790 -15.44838 -15.26928 -14.89552 -14.65102 -14.46126 -14.30253 -14.25101 -14.01040 -13.80332 -13.21224 -12.92727 -12.69431 -12.52840 -12.41361 -12.39258 -12.34853 -11.95113 -11.62798 -11.42526 -11.01988 -10.81237 -10.66243 -9.74622 -9.63482 -8.25049 -6.35133 -0.25298 -0.05434 0.71552 1.42525 1.44232 1.56200 1.61564 2.37330 2.39867 2.72275 3.07535 3.10619 3.29696 3.46291 3.71353 3.85212 3.92664 4.16525 4.32411 4.39382 4.51251 4.63179 4.75410 4.86469 4.96640 5.06319 5.10406 5.20940 5.38592 5.55581 5.80574 5.83689 6.00763 6.22629 6.45491 6.77423 7.34352 8.86353 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.022874 B = 0.003901 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.811749 B = 7176.277225 C = 7918.198457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.048 3.952 3 N -0.519 5.519 4 C 0.210 3.790 5 C -0.526 4.526 6 H 0.066 0.934 7 C 0.009 3.991 8 N -0.930 5.930 9 Si 0.970 3.030 10 H -0.263 1.263 11 H -0.278 1.278 12 H -0.279 1.279 13 C 0.399 3.601 14 H 0.118 0.882 15 F -0.193 7.193 16 O -0.348 6.348 17 C 0.076 3.924 18 C -0.090 4.090 19 C -0.099 4.099 20 C 0.123 3.877 21 Cl -0.023 7.023 22 N -0.463 5.463 23 C 0.032 3.968 24 H 0.074 0.926 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.041 0.959 28 H 0.075 0.925 29 H -0.017 1.017 30 H 0.016 0.984 31 H 0.266 0.734 32 H 0.175 0.825 33 H 0.190 0.810 34 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.839 -1.240 -14.232 15.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.079 4.079 3 N -0.250 5.250 4 C 0.084 3.916 5 C -0.564 4.564 6 H 0.084 0.916 7 C -0.190 4.190 8 N -0.569 5.569 9 Si 0.794 3.206 10 H -0.187 1.187 11 H -0.204 1.204 12 H -0.205 1.205 13 C 0.237 3.763 14 H 0.135 0.865 15 F -0.174 7.174 16 O -0.261 6.261 17 C 0.027 3.973 18 C -0.116 4.116 19 C -0.119 4.119 20 C -0.042 4.042 21 Cl 0.006 6.994 22 N -0.175 5.175 23 C -0.126 4.126 24 H 0.093 0.907 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.059 0.941 28 H 0.093 0.907 29 H 0.001 0.999 30 H 0.035 0.965 31 H 0.075 0.925 32 H 0.192 0.808 33 H 0.207 0.793 34 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -7.162 -0.214 -14.037 15.760 hybrid contribution 0.928 -0.846 0.413 1.321 sum -6.235 -1.060 -13.625 15.021 Atomic orbital electron populations 1.21924 0.93241 1.02350 1.02552 1.22067 0.96846 0.87552 1.01395 1.63266 1.21915 1.20451 1.19336 1.19434 0.80286 0.95704 0.96129 1.21362 0.94156 1.46421 0.94508 0.91552 1.25830 0.95342 0.94785 1.03060 1.70067 1.00129 1.48666 1.38072 0.85323 0.78441 0.77830 0.78980 1.18700 1.20417 1.20488 1.23645 0.75509 0.95774 0.81361 0.86468 1.92878 1.33564 1.96098 1.94883 1.86393 1.76873 1.45122 1.17688 1.20282 0.97340 0.93405 0.86256 1.21344 0.98598 1.02333 0.89357 1.22043 0.98306 0.92522 0.99042 1.21857 1.01759 0.91397 0.89198 1.98393 1.96339 1.80897 1.23798 1.66836 1.13101 1.38616 0.98943 1.22870 1.02510 0.92066 0.95173 0.90709 0.92571 0.92099 0.94089 0.90651 0.99892 0.96549 0.92480 0.80781 0.79280 0.81483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.36 9.43 71.98 0.68 -3.68 16 2 C 0.05 1.80 5.43 86.30 0.47 2.27 16 3 N -0.52 -21.44 4.61 ******* -4.69 -26.13 16 4 C 0.21 10.46 4.53 85.56 0.39 10.84 16 5 C -0.53 -28.22 8.46 25.60 0.22 -28.00 16 6 H 0.07 3.50 7.46 -2.91 -0.02 3.48 16 7 C 0.01 0.48 5.46 84.65 0.46 0.94 16 8 N -0.93 -53.29 13.29 21.45 0.28 -53.01 16 9 Si 0.97 42.39 29.54 68.60 2.03 44.42 16 10 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 11 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 12 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 13 C 0.40 14.04 2.95 127.69 0.38 14.42 16 14 H 0.12 3.93 6.48 -2.38 -0.02 3.92 16 15 F -0.19 -6.36 13.89 44.97 0.62 -5.74 16 16 O -0.35 -11.85 8.76 -92.86 -0.81 -12.66 16 17 C 0.08 2.21 6.67 22.59 0.15 2.36 16 18 C -0.09 -2.05 10.13 22.55 0.23 -1.82 16 19 C -0.10 -1.92 9.87 22.37 0.22 -1.70 16 20 C 0.12 2.97 7.27 84.72 0.62 3.59 16 21 Cl -0.02 -0.47 29.10 -2.72 -0.08 -0.55 16 22 N -0.46 -13.35 10.33 -186.32 -1.93 -15.28 16 23 C 0.03 0.91 10.02 84.78 0.85 1.76 16 24 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 25 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.06 1.84 5.98 -2.39 -0.01 1.83 16 27 H 0.04 1.51 7.08 -2.39 -0.02 1.49 16 28 H 0.08 3.02 6.96 -2.38 -0.02 3.01 16 29 H -0.02 -0.90 8.06 -2.39 -0.02 -0.92 16 30 H 0.02 0.87 7.82 -2.38 -0.02 0.85 16 31 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 32 H 0.17 3.21 8.06 -2.91 -0.02 3.18 16 33 H 0.19 2.18 8.06 -2.91 -0.02 2.15 16 34 H 0.17 4.59 5.94 -2.91 -0.02 4.57 16 Total: -1.00 -61.23 307.53 1.21 -60.02 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: 1.12 Total: 7.95 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: 4.66 Total: 0.97 kcal Atomic # 7 Polarization: -88.09 SS G_CDS: -6.33 Total: -94.42 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: -0.81 Total: -12.66 kcal Atomic # 9 Polarization: -6.36 SS G_CDS: 0.62 Total: -5.74 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -0.08 Total: -0.55 kcal Total: -61.23 1.21 -60.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165047595.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.174 kcal (2) G-P(sol) polarization free energy of solvation -61.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds