Wall clock time and date at job start Tue Mar 31 2020 06:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46899 * 109.47639 * 2 1 4 4 C 1.46892 * 111.00328 * 193.95727 * 3 2 1 5 5 C 1.50702 * 109.47461 * 72.10527 * 4 3 2 6 6 H 1.07997 * 119.99593 * 4.82106 * 5 4 3 7 7 C 1.37875 * 119.99897 * 184.82349 * 5 4 3 8 8 N 1.31518 * 119.99669 * 184.90207 * 7 5 4 9 9 Si 1.86796 * 120.00384 * 4.90137 * 7 5 4 10 10 H 1.48504 * 109.47353 * 94.16298 * 9 7 5 11 11 H 1.48496 * 109.47253 * 214.16595 * 9 7 5 12 12 H 1.48504 * 109.46983 * 334.16656 * 9 7 5 13 13 C 1.46898 * 110.99748 * 69.99833 * 3 2 1 14 14 H 1.08998 * 109.47650 * 305.82003 * 13 3 2 15 15 F 1.39899 * 109.47393 * 65.82073 * 13 3 2 16 16 O 1.42907 * 109.47141 * 185.81910 * 13 3 2 17 17 C 1.35734 * 117.00303 * 163.39005 * 16 13 3 18 18 C 1.39320 * 120.84327 * 175.83202 * 17 16 13 19 19 C 1.37916 * 119.12376 * 179.97438 * 18 17 16 20 20 N 1.31989 * 120.84164 * 0.02562 * 19 18 17 21 21 C 1.32041 * 121.84535 * 359.97438 * 20 19 18 22 22 Cl 1.73606 * 119.60349 * 179.72711 * 21 20 19 23 23 C 1.38158 * 120.79052 * 0.02562 * 21 20 19 24 24 H 1.08997 * 109.47096 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46744 * 299.99984 * 1 2 3 26 26 H 1.08997 * 109.47149 * 59.99723 * 1 2 3 27 27 H 1.08997 * 109.47026 * 239.99664 * 2 1 3 28 28 H 1.09006 * 109.47149 * 120.00111 * 2 1 3 29 29 H 1.09001 * 109.47088 * 192.10681 * 4 3 2 30 30 H 1.09003 * 109.47060 * 312.10211 * 4 3 2 31 31 H 0.97002 * 119.99642 * 180.02562 * 8 7 5 32 32 H 1.08005 * 120.43476 * 359.95838 * 18 17 16 33 33 H 1.08003 * 119.57432 * 179.97438 * 19 18 17 34 34 H 1.07993 * 120.46125 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 3.4500 1.4376 -0.3308 5 6 3.6390 1.1294 -1.7938 6 1 2.7788 0.9927 -2.4323 7 6 4.9101 1.0221 -2.3170 8 7 5.0764 0.8492 -3.6102 9 14 6.3959 1.1222 -1.1895 10 1 6.8083 -0.2477 -0.7910 11 1 7.5150 1.7881 -1.9032 12 1 6.0457 1.9058 0.0224 13 6 1.7530 2.0376 1.2887 14 1 0.6921 1.9554 1.5250 15 9 2.5037 1.4144 2.2913 16 8 2.1176 3.4170 1.2086 17 6 1.6275 4.2409 2.1695 18 6 2.0007 5.5823 2.2188 19 6 1.4806 6.3877 3.2102 20 7 0.6402 5.9025 4.1049 21 6 0.2625 4.6373 4.0917 22 17 -0.8405 4.0590 5.3013 23 6 0.7392 3.7669 3.1306 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 3.8360 2.4342 -0.1165 30 1 3.9886 0.7029 0.2678 31 1 5.9706 0.7733 -3.9783 32 1 2.6884 5.9859 1.4904 33 1 1.7653 7.4285 3.2555 34 1 0.4270 2.7331 3.1250 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165048957.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:27 Heat of formation + Delta-G solvation = -44.928422 kcal Electronic energy + Delta-G solvation = -20790.073192 eV Core-core repulsion = 17278.272881 eV Total energy + Delta-G solvation = -3511.800312 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.078 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -47.76707 -40.74556 -38.45598 -36.88071 -36.52215 -32.69145 -31.74692 -31.38763 -30.40459 -27.83723 -25.33402 -23.70835 -23.07380 -22.33976 -20.30998 -19.09945 -17.76752 -16.93299 -16.91167 -16.16659 -16.01091 -15.60193 -14.96435 -14.52550 -14.32529 -14.10331 -13.97027 -13.64258 -13.59746 -13.17753 -12.62975 -12.60152 -12.22389 -11.83329 -11.59745 -11.54923 -11.37489 -11.32478 -10.85949 -10.62635 -10.25534 -9.99875 -9.96801 -9.50085 -9.41918 -9.18188 -8.68048 -8.12369 -6.15027 -4.13505 0.64719 0.96761 1.53685 2.51955 3.22865 3.31527 3.35636 3.38391 4.07984 4.15249 4.33477 4.35105 4.50497 4.68924 4.98566 5.01074 5.14442 5.18562 5.34827 5.41712 5.53692 5.64125 5.73629 5.93939 6.06511 6.31674 6.39839 6.54667 6.68636 6.95236 7.30275 7.47559 7.50040 7.67648 8.47315 8.92629 9.45745 10.97465 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.021632 B = 0.004564 C = 0.004078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.038609 B = 6132.955572 C = 6863.891387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.052 3.948 3 N -0.518 5.518 4 C 0.160 3.840 5 C -0.514 4.514 6 H 0.083 0.917 7 C 0.074 3.926 8 N -0.894 5.894 9 Si 0.871 3.129 10 H -0.276 1.276 11 H -0.283 1.283 12 H -0.266 1.266 13 C 0.391 3.609 14 H 0.111 0.889 15 F -0.229 7.229 16 O -0.291 6.291 17 C 0.196 3.804 18 C -0.196 4.196 19 C 0.152 3.848 20 N -0.505 5.505 21 C 0.214 3.786 22 Cl -0.030 7.030 23 C -0.246 4.246 24 H 0.061 0.939 25 H 0.041 0.959 26 H 0.068 0.932 27 H 0.108 0.892 28 H 0.037 0.963 29 H 0.039 0.961 30 H -0.003 1.003 31 H 0.265 0.735 32 H 0.156 0.844 33 H 0.175 0.825 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.707 5.848 14.239 18.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.075 4.075 3 N -0.247 5.247 4 C 0.034 3.966 5 C -0.552 4.552 6 H 0.101 0.899 7 C -0.129 4.129 8 N -0.532 5.532 9 Si 0.698 3.302 10 H -0.202 1.202 11 H -0.209 1.209 12 H -0.191 1.191 13 C 0.229 3.771 14 H 0.128 0.872 15 F -0.211 7.211 16 O -0.202 6.202 17 C 0.141 3.859 18 C -0.216 4.216 19 C -0.003 4.003 20 N -0.220 5.220 21 C 0.050 3.950 22 Cl -0.001 7.001 23 C -0.269 4.269 24 H 0.080 0.920 25 H 0.060 0.940 26 H 0.087 0.913 27 H 0.126 0.874 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.015 0.985 31 H 0.075 0.925 32 H 0.173 0.827 33 H 0.192 0.808 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -10.078 6.555 14.302 18.683 hybrid contribution 1.514 -1.163 0.697 2.032 sum -8.564 5.393 14.999 18.094 Atomic orbital electron populations 1.21888 0.95563 1.01595 1.01809 1.22163 0.94857 0.87325 1.03117 1.62580 1.23229 1.17979 1.20916 1.20289 0.81054 0.97111 0.98110 1.20886 0.94176 1.48746 0.91387 0.89865 1.24844 0.98605 0.94588 0.94858 1.69891 1.22686 1.49551 1.11110 0.86919 0.83103 0.78739 0.81431 1.20183 1.20891 1.19062 1.23727 0.93602 0.77379 0.82366 0.87180 1.92975 1.80602 1.82426 1.65103 1.86284 1.69092 1.19428 1.45411 1.19184 0.89483 0.90835 0.86427 1.21701 1.05363 0.91385 1.03182 1.22530 0.89980 0.99978 0.87795 1.67065 1.14857 1.13180 1.26868 1.21235 0.93137 0.90150 0.90503 1.98408 1.60321 1.86732 1.54660 1.21882 1.03816 1.02541 0.98614 0.92001 0.93986 0.91327 0.87417 0.94498 0.94337 0.98475 0.92481 0.82674 0.80789 0.83523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.93 37.16 0.37 -1.65 16 2 C 0.05 0.90 5.49 -3.83 -0.02 0.88 16 3 N -0.52 -10.41 4.57 -241.03 -1.10 -11.51 16 4 C 0.16 3.83 3.30 -4.98 -0.02 3.81 16 5 C -0.51 -14.17 8.90 -34.44 -0.31 -14.47 16 6 H 0.08 2.48 8.00 -52.49 -0.42 2.06 16 7 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 8 N -0.89 -26.68 13.96 55.43 0.77 -25.91 16 9 Si 0.87 21.23 27.42 -169.99 -4.66 16.57 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 12 H -0.27 -6.37 6.66 56.52 0.38 -6.00 16 13 C 0.39 6.74 2.85 60.06 0.17 6.91 16 14 H 0.11 1.55 4.72 -51.93 -0.24 1.31 16 15 F -0.23 -4.14 16.23 2.25 0.04 -4.11 16 16 O -0.29 -5.11 9.30 -18.91 -0.18 -5.29 16 17 C 0.20 2.83 6.72 -38.83 -0.26 2.57 16 18 C -0.20 -2.34 10.07 -39.30 -0.40 -2.73 16 19 C 0.15 1.60 11.17 -17.60 -0.20 1.40 16 20 N -0.50 -6.38 10.34 -10.44 -0.11 -6.49 16 21 C 0.21 2.73 7.27 -17.49 -0.13 2.60 16 22 Cl -0.03 -0.33 29.11 -51.86 -1.51 -1.84 16 23 C -0.25 -3.23 8.80 -39.26 -0.35 -3.58 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.04 0.49 6.58 -51.93 -0.34 0.15 16 26 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.11 2.07 7.17 -51.93 -0.37 1.70 16 28 H 0.04 0.61 7.61 -51.93 -0.40 0.22 16 29 H 0.04 0.97 6.83 -51.93 -0.35 0.61 16 30 H 0.00 -0.06 7.02 -51.93 -0.36 -0.43 16 31 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.16 1.62 8.06 -52.48 -0.42 1.19 16 33 H 0.18 1.16 8.06 -52.48 -0.42 0.74 16 34 H 0.15 1.75 6.14 -52.49 -0.32 1.43 16 LS Contribution 306.53 15.07 4.62 4.62 Total: -1.00 -30.96 306.53 -7.02 -37.98 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: -3.67 Total: -1.75 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -1.23 Total: -2.27 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: -0.43 Total: -43.91 kcal Atomic # 8 Polarization: -5.11 SS G_CDS: -0.18 Total: -5.29 kcal Atomic # 9 Polarization: -4.14 SS G_CDS: 0.04 Total: -4.11 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.66 Total: 16.57 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -1.51 Total: -1.84 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.96 -7.02 -37.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165048957.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.949 kcal (2) G-P(sol) polarization free energy of solvation -30.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds