Wall clock time and date at job start Tue Mar 31 2020 06:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46899 * 109.47639 * 2 1 4 4 C 1.46892 * 111.00328 * 193.95727 * 3 2 1 5 5 C 1.50702 * 109.47461 * 72.10527 * 4 3 2 6 6 H 1.07997 * 119.99593 * 4.82106 * 5 4 3 7 7 C 1.37875 * 119.99897 * 184.82349 * 5 4 3 8 8 N 1.31518 * 119.99669 * 184.90207 * 7 5 4 9 9 Si 1.86796 * 120.00384 * 4.90137 * 7 5 4 10 10 H 1.48504 * 109.47353 * 94.16298 * 9 7 5 11 11 H 1.48496 * 109.47253 * 214.16595 * 9 7 5 12 12 H 1.48504 * 109.46983 * 334.16656 * 9 7 5 13 13 C 1.46898 * 110.99748 * 69.99833 * 3 2 1 14 14 H 1.08998 * 109.47650 * 305.82003 * 13 3 2 15 15 F 1.39899 * 109.47393 * 65.82073 * 13 3 2 16 16 O 1.42907 * 109.47141 * 185.81910 * 13 3 2 17 17 C 1.35734 * 117.00303 * 163.39005 * 16 13 3 18 18 C 1.39320 * 120.84327 * 175.83202 * 17 16 13 19 19 C 1.37916 * 119.12376 * 179.97438 * 18 17 16 20 20 N 1.31989 * 120.84164 * 0.02562 * 19 18 17 21 21 C 1.32041 * 121.84535 * 359.97438 * 20 19 18 22 22 Cl 1.73606 * 119.60349 * 179.72711 * 21 20 19 23 23 C 1.38158 * 120.79052 * 0.02562 * 21 20 19 24 24 H 1.08997 * 109.47096 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46744 * 299.99984 * 1 2 3 26 26 H 1.08997 * 109.47149 * 59.99723 * 1 2 3 27 27 H 1.08997 * 109.47026 * 239.99664 * 2 1 3 28 28 H 1.09006 * 109.47149 * 120.00111 * 2 1 3 29 29 H 1.09001 * 109.47088 * 192.10681 * 4 3 2 30 30 H 1.09003 * 109.47060 * 312.10211 * 4 3 2 31 31 H 0.97002 * 119.99642 * 180.02562 * 8 7 5 32 32 H 1.08005 * 120.43476 * 359.95838 * 18 17 16 33 33 H 1.08003 * 119.57432 * 179.97438 * 19 18 17 34 34 H 1.07993 * 120.46125 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 3.4500 1.4376 -0.3308 5 6 3.6390 1.1294 -1.7938 6 1 2.7788 0.9927 -2.4323 7 6 4.9101 1.0221 -2.3170 8 7 5.0764 0.8492 -3.6102 9 14 6.3959 1.1222 -1.1895 10 1 6.8083 -0.2477 -0.7910 11 1 7.5150 1.7881 -1.9032 12 1 6.0457 1.9058 0.0224 13 6 1.7530 2.0376 1.2887 14 1 0.6921 1.9554 1.5250 15 9 2.5037 1.4144 2.2913 16 8 2.1176 3.4170 1.2086 17 6 1.6275 4.2409 2.1695 18 6 2.0007 5.5823 2.2188 19 6 1.4806 6.3877 3.2102 20 7 0.6402 5.9025 4.1049 21 6 0.2625 4.6373 4.0917 22 17 -0.8405 4.0590 5.3013 23 6 0.7392 3.7669 3.1306 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 3.8360 2.4342 -0.1165 30 1 3.9886 0.7029 0.2678 31 1 5.9706 0.7733 -3.9783 32 1 2.6884 5.9859 1.4904 33 1 1.7653 7.4285 3.2555 34 1 0.4270 2.7331 3.1250 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165048957.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:26 Heat of formation + Delta-G solvation = -67.034749 kcal Electronic energy + Delta-G solvation = -20791.031795 eV Core-core repulsion = 17278.272881 eV Total energy + Delta-G solvation = -3512.758914 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.078 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.14505 -41.75155 -39.62747 -38.11707 -37.69313 -34.77830 -32.78102 -32.31186 -31.90337 -29.54489 -26.69411 -24.69672 -24.29762 -23.93113 -21.81713 -20.24695 -19.36587 -18.50552 -18.25775 -17.24108 -17.14270 -16.83366 -16.42660 -15.94683 -15.59476 -15.42982 -15.16049 -14.97254 -14.90233 -14.57443 -14.40319 -14.00237 -13.62657 -13.05178 -12.78897 -12.76529 -12.69460 -12.53166 -12.41836 -12.25372 -11.90201 -11.68946 -11.60584 -10.91624 -10.82780 -10.42400 -10.14273 -9.75109 -8.33603 -6.37027 -0.26713 -0.02421 0.62112 1.30123 1.31609 1.34498 1.43517 2.29586 2.45845 2.80529 2.92136 3.00012 3.29183 3.52590 3.71333 3.79885 4.02510 4.11188 4.21669 4.28480 4.43438 4.49580 4.67085 4.71365 4.79873 4.95208 5.07248 5.19781 5.29531 5.44759 5.59266 5.66609 6.13027 6.35941 6.56962 6.68573 7.26045 8.82406 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.021632 B = 0.004564 C = 0.004078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.038609 B = 6132.955572 C = 6863.891387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.050 3.950 3 N -0.535 5.535 4 C 0.173 3.827 5 C -0.516 4.516 6 H 0.046 0.954 7 C 0.019 3.981 8 N -0.938 5.938 9 Si 0.937 3.063 10 H -0.266 1.266 11 H -0.276 1.276 12 H -0.259 1.259 13 C 0.394 3.606 14 H 0.146 0.854 15 F -0.235 7.235 16 O -0.317 6.317 17 C 0.169 3.831 18 C -0.196 4.196 19 C 0.163 3.837 20 N -0.516 5.516 21 C 0.204 3.796 22 Cl -0.019 7.019 23 C -0.247 4.247 24 H 0.086 0.914 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.078 0.922 28 H 0.046 0.954 29 H 0.028 0.972 30 H -0.006 1.006 31 H 0.269 0.731 32 H 0.168 0.832 33 H 0.216 0.784 34 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.050 6.704 16.403 20.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.077 4.077 3 N -0.264 5.264 4 C 0.047 3.953 5 C -0.555 4.555 6 H 0.065 0.935 7 C -0.179 4.179 8 N -0.578 5.578 9 Si 0.761 3.239 10 H -0.191 1.191 11 H -0.201 1.201 12 H -0.183 1.183 13 C 0.232 3.768 14 H 0.163 0.837 15 F -0.217 7.217 16 O -0.229 6.229 17 C 0.114 3.886 18 C -0.216 4.216 19 C 0.008 3.992 20 N -0.231 5.231 21 C 0.041 3.959 22 Cl 0.009 6.991 23 C -0.269 4.269 24 H 0.105 0.895 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.096 0.904 28 H 0.064 0.936 29 H 0.046 0.954 30 H 0.012 0.988 31 H 0.078 0.922 32 H 0.185 0.815 33 H 0.232 0.768 34 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -10.451 7.411 16.488 20.880 hybrid contribution 1.518 -1.366 0.031 2.042 sum -8.933 6.045 16.519 19.728 Atomic orbital electron populations 1.21835 0.92217 1.03470 1.02386 1.22215 0.97589 0.85800 1.02054 1.62420 1.20600 1.19792 1.23606 1.19912 0.83864 0.96032 0.95499 1.21058 0.93163 1.48179 0.93056 0.93542 1.25680 1.01770 0.94256 0.96232 1.70022 1.23664 1.51090 1.13060 0.85867 0.79254 0.79277 0.79512 1.19098 1.20121 1.18308 1.23837 0.94992 0.77289 0.80696 0.83736 1.92957 1.81027 1.82645 1.65058 1.86229 1.70229 1.19522 1.46938 1.19511 0.90857 0.91416 0.86770 1.22009 1.05310 0.90616 1.03699 1.23182 0.88396 1.01371 0.86249 1.67167 1.15339 1.13134 1.27503 1.21378 0.93450 0.90317 0.90778 1.98409 1.59883 1.86666 1.54117 1.21926 1.03566 1.03026 0.98388 0.89527 0.91818 0.92252 0.90386 0.93613 0.95395 0.98781 0.92176 0.81455 0.76784 0.82728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.55 9.93 71.98 0.71 -2.83 16 2 C 0.05 1.70 5.49 86.30 0.47 2.18 16 3 N -0.54 -21.46 4.57 ******* -4.64 -26.11 16 4 C 0.17 8.39 3.30 85.56 0.28 8.67 16 5 C -0.52 -29.35 8.90 25.60 0.23 -29.13 16 6 H 0.05 2.91 8.00 -2.91 -0.02 2.89 16 7 C 0.02 1.11 5.47 84.65 0.46 1.57 16 8 N -0.94 -57.41 13.96 21.45 0.30 -57.11 16 9 Si 0.94 43.98 27.42 68.60 1.88 45.86 16 10 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 12 H -0.26 -11.77 6.66 99.48 0.66 -11.10 16 13 C 0.39 13.09 2.85 127.69 0.36 13.45 16 14 H 0.15 3.75 4.72 -2.39 -0.01 3.74 16 15 F -0.23 -8.16 16.23 44.97 0.73 -7.43 16 16 O -0.32 -10.89 9.30 -90.58 -0.84 -11.73 16 17 C 0.17 4.63 6.72 22.76 0.15 4.78 16 18 C -0.20 -4.28 10.07 22.45 0.23 -4.06 16 19 C 0.16 2.95 11.17 84.59 0.95 3.90 16 20 N -0.52 -11.79 10.34 -186.93 -1.93 -13.72 16 21 C 0.20 4.82 7.27 84.64 0.62 5.43 16 22 Cl -0.02 -0.40 29.11 -2.72 -0.08 -0.48 16 23 C -0.25 -6.04 8.80 22.48 0.20 -5.84 16 24 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.06 1.31 6.58 -2.39 -0.02 1.30 16 26 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.08 3.11 7.17 -2.39 -0.02 3.09 16 28 H 0.05 1.47 7.61 -2.38 -0.02 1.45 16 29 H 0.03 1.41 6.83 -2.39 -0.02 1.39 16 30 H -0.01 -0.27 7.02 -2.39 -0.02 -0.29 16 31 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 32 H 0.17 3.16 8.06 -2.91 -0.02 3.13 16 33 H 0.22 1.98 8.06 -2.91 -0.02 1.95 16 34 H 0.16 3.37 6.14 -2.91 -0.02 3.35 16 Total: -1.00 -68.09 306.53 1.16 -66.93 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: 1.08 Total: 5.66 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: 4.66 Total: -1.87 kcal Atomic # 7 Polarization: -90.66 SS G_CDS: -6.27 Total: -96.93 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: -0.84 Total: -11.73 kcal Atomic # 9 Polarization: -8.16 SS G_CDS: 0.73 Total: -7.43 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.88 Total: 45.86 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -0.08 Total: -0.48 kcal Total: -68.09 1.16 -66.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165048957.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.108 kcal (2) G-P(sol) polarization free energy of solvation -68.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds