Wall clock time and date at job start Tue Mar 31 2020 06:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46897 * 109.47328 * 2 1 4 4 C 1.46898 * 111.00238 * 195.80491 * 3 2 1 5 5 C 1.50697 * 109.46875 * 66.04396 * 4 3 2 6 6 H 1.07998 * 120.00040 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99811 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99899 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 119.99919 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47139 * 89.99770 * 9 7 5 11 11 H 1.48505 * 109.47147 * 209.99410 * 9 7 5 12 12 H 1.48491 * 109.47304 * 329.99676 * 9 7 5 13 13 C 1.46905 * 111.00046 * 71.85075 * 3 2 1 14 14 H 1.08994 * 109.47212 * 58.39941 * 13 3 2 15 15 F 1.39906 * 109.47109 * 298.40290 * 13 3 2 16 16 O 1.42897 * 109.47067 * 178.40323 * 13 3 2 17 17 C 1.35744 * 117.00414 * 59.21241 * 16 13 3 18 18 C 1.39318 * 120.83382 * 4.69568 * 17 16 13 19 19 C 1.37919 * 119.12173 * 179.72996 * 18 17 16 20 20 N 1.32001 * 120.84033 * 0.54821 * 19 18 17 21 21 C 1.32045 * 121.84178 * 359.72477 * 20 19 18 22 22 Cl 1.73596 * 119.60426 * 180.02562 * 21 20 19 23 23 C 1.38165 * 120.78723 * 359.97438 * 21 20 19 24 24 H 1.09000 * 109.46770 * 53.08580 * 1 2 3 25 25 H 1.08998 * 109.46899 * 173.08410 * 1 2 3 26 26 H 1.08996 * 109.47358 * 293.08678 * 1 2 3 27 27 H 1.08996 * 109.47486 * 239.99819 * 2 1 3 28 28 H 1.09007 * 109.47087 * 119.99652 * 2 1 3 29 29 H 1.08998 * 109.47107 * 306.04492 * 4 3 2 30 30 H 1.08998 * 109.47030 * 186.04196 * 4 3 2 31 31 H 0.96996 * 119.99695 * 180.02562 * 8 7 5 32 32 H 1.08006 * 120.44123 * 359.97438 * 18 17 16 33 33 H 1.08003 * 119.58491 * 180.26935 * 19 18 17 34 34 H 1.08006 * 120.45743 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4393 1.4414 -0.3735 5 6 3.5993 1.0045 -1.8069 6 1 2.7330 0.7144 -2.3829 7 6 4.8515 0.9763 -2.3832 8 7 4.9911 0.5955 -3.6343 9 14 6.3497 1.4788 -1.3872 10 1 6.9109 0.2870 -0.7016 11 1 7.3749 2.0573 -2.2926 12 1 5.9547 2.4915 -0.3755 13 6 1.7925 2.0237 1.3032 14 1 2.2961 1.4505 2.0816 15 9 0.4196 2.0651 1.5692 16 8 2.3133 3.3542 1.2789 17 6 1.8009 4.1997 0.3487 18 6 0.7453 3.8052 -0.4705 19 6 0.2483 4.6948 -1.3999 20 7 0.7669 5.9021 -1.5258 21 6 1.7711 6.3110 -0.7722 22 17 2.4080 7.9116 -0.9869 23 6 2.3202 5.4806 0.1858 24 1 -0.3633 0.6172 -0.8217 25 1 -0.3633 -1.0202 -0.1237 26 1 -0.3634 0.4030 0.9453 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 4.0122 0.7782 0.2746 30 1 3.8040 2.4625 -0.2621 31 1 5.8721 0.5752 -4.0397 32 1 0.3192 2.8173 -0.3763 33 1 -0.5728 4.3983 -2.0358 34 1 3.1412 5.8208 0.7997 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165048959.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:28 Heat of formation + Delta-G solvation = -39.172131 kcal Electronic energy + Delta-G solvation = -21492.159331 eV Core-core repulsion = 17980.608631 eV Total energy + Delta-G solvation = -3511.550700 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.078 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -47.98564 -40.34728 -38.36858 -36.54521 -36.30326 -32.69331 -31.51616 -30.79096 -30.36256 -27.83297 -24.87753 -23.51862 -22.57951 -22.48253 -20.74760 -18.43382 -17.82608 -17.26282 -16.17005 -16.11338 -15.84268 -15.29684 -14.70155 -14.64250 -14.10480 -13.88094 -13.63959 -13.58644 -13.28017 -13.11475 -12.79575 -12.53360 -12.14067 -11.50132 -11.45431 -11.39412 -11.21450 -11.17280 -10.87734 -10.60260 -10.38676 -9.99977 -9.56454 -9.48166 -8.98778 -8.78812 -8.71864 -7.96983 -6.20106 -4.20075 1.16018 1.42938 1.86071 2.99361 3.17654 3.27179 3.28639 3.85261 3.87914 4.28712 4.50498 4.72246 4.89616 5.08067 5.14388 5.20347 5.32836 5.40362 5.60168 5.70146 5.81388 5.84910 6.08337 6.23134 6.36098 6.42607 6.50314 6.62201 6.68404 7.00207 7.21658 7.51116 7.58265 7.94191 8.40455 8.85814 9.39175 10.92158 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.012322 B = 0.007346 C = 0.005421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.813540 B = 3810.503803 C = 5164.288327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.058 3.942 3 N -0.564 5.564 4 C 0.167 3.833 5 C -0.515 4.515 6 H 0.084 0.916 7 C 0.075 3.925 8 N -0.892 5.892 9 Si 0.869 3.131 10 H -0.276 1.276 11 H -0.283 1.283 12 H -0.265 1.265 13 C 0.404 3.596 14 H 0.119 0.881 15 F -0.198 7.198 16 O -0.310 6.310 17 C 0.187 3.813 18 C -0.203 4.203 19 C 0.141 3.859 20 N -0.501 5.501 21 C 0.199 3.801 22 Cl -0.037 7.037 23 C -0.187 4.187 24 H 0.062 0.938 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.105 0.895 28 H 0.029 0.971 29 H -0.007 1.007 30 H 0.038 0.962 31 H 0.266 0.734 32 H 0.167 0.833 33 H 0.166 0.834 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.519 5.204 10.013 13.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.069 4.069 3 N -0.298 5.298 4 C 0.043 3.957 5 C -0.553 4.553 6 H 0.102 0.898 7 C -0.128 4.128 8 N -0.530 5.530 9 Si 0.696 3.304 10 H -0.202 1.202 11 H -0.208 1.208 12 H -0.190 1.190 13 C 0.243 3.757 14 H 0.135 0.865 15 F -0.179 7.179 16 O -0.221 6.221 17 C 0.134 3.866 18 C -0.223 4.223 19 C -0.014 4.014 20 N -0.215 5.215 21 C 0.034 3.966 22 Cl -0.008 7.008 23 C -0.209 4.209 24 H 0.081 0.919 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.123 0.877 28 H 0.047 0.953 29 H 0.010 0.990 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.184 0.816 33 H 0.183 0.817 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -7.797 6.169 9.076 13.462 hybrid contribution 1.675 -0.777 1.449 2.347 sum -6.122 5.393 10.525 13.317 Atomic orbital electron populations 1.22144 0.95457 1.01382 1.02908 1.22052 0.95119 0.87161 1.02562 1.62241 1.24250 1.19160 1.24107 1.20187 0.80440 0.97300 0.97815 1.20833 0.95025 1.45280 0.94146 0.89808 1.24838 0.98608 0.94595 0.94785 1.69866 1.23829 1.47104 1.12162 0.86946 0.83365 0.79442 0.80624 1.20156 1.20834 1.18962 1.23499 0.75595 0.81951 0.94621 0.86453 1.92841 1.34780 1.95833 1.94455 1.86395 1.61652 1.22057 1.52004 1.18837 0.90970 0.88931 0.87898 1.22811 0.98194 1.03368 0.97943 1.22426 0.97369 0.86791 0.94839 1.66982 1.10928 1.18264 1.25351 1.21047 0.93808 0.88203 0.93500 1.98380 1.84332 1.21386 1.96743 1.20937 1.04523 0.92625 1.02769 0.91880 0.92802 0.91911 0.87694 0.95316 0.98958 0.94395 0.92385 0.81582 0.81712 0.83578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 9.31 37.16 0.35 -1.85 16 2 C 0.06 0.94 5.53 -3.82 -0.02 0.92 16 3 N -0.56 -10.26 2.54 -241.02 -0.61 -10.87 16 4 C 0.17 3.70 3.61 -4.98 -0.02 3.68 16 5 C -0.51 -13.58 8.84 -34.44 -0.30 -13.88 16 6 H 0.08 2.41 7.50 -52.49 -0.39 2.01 16 7 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 8 N -0.89 -26.24 13.96 55.43 0.77 -25.46 16 9 Si 0.87 20.64 27.47 -169.99 -4.67 15.97 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.26 -6.10 6.54 56.52 0.37 -5.73 16 13 C 0.40 6.31 3.71 60.07 0.22 6.53 16 14 H 0.12 1.57 8.08 -51.93 -0.42 1.15 16 15 F -0.20 -2.88 12.15 2.25 0.03 -2.85 16 16 O -0.31 -5.26 9.27 -18.94 -0.18 -5.43 16 17 C 0.19 3.22 5.99 -38.83 -0.23 2.99 16 18 C -0.20 -3.35 8.22 -39.30 -0.32 -3.68 16 19 C 0.14 2.21 11.17 -17.60 -0.20 2.01 16 20 N -0.50 -8.52 10.34 -10.43 -0.11 -8.62 16 21 C 0.20 3.27 7.27 -17.49 -0.13 3.15 16 22 Cl -0.04 -0.53 29.10 -51.86 -1.51 -2.04 16 23 C -0.19 -3.05 9.84 -39.26 -0.39 -3.43 16 24 H 0.06 0.90 7.94 -51.93 -0.41 0.49 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.81 5.79 -51.93 -0.30 0.51 16 27 H 0.10 1.97 6.59 -51.93 -0.34 1.63 16 28 H 0.03 0.42 8.01 -51.93 -0.42 0.01 16 29 H -0.01 -0.16 7.55 -51.93 -0.39 -0.55 16 30 H 0.04 0.89 5.86 -51.93 -0.30 0.59 16 31 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.17 2.71 4.76 -52.48 -0.25 2.46 16 33 H 0.17 2.06 8.06 -52.48 -0.42 1.64 16 34 H 0.15 2.10 8.06 -52.48 -0.42 1.68 16 LS Contribution 299.19 15.07 4.51 4.51 Total: -1.00 -29.03 299.19 -6.57 -35.59 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -3.67 Total: 0.80 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -1.14 Total: -1.59 kcal Atomic # 7 Polarization: -45.01 SS G_CDS: 0.05 Total: -44.96 kcal Atomic # 8 Polarization: -5.26 SS G_CDS: -0.18 Total: -5.43 kcal Atomic # 9 Polarization: -2.88 SS G_CDS: 0.03 Total: -2.85 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.67 Total: 15.97 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.51 Total: -2.04 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.03 -6.57 -35.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165048959.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.578 kcal (2) G-P(sol) polarization free energy of solvation -29.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds