Wall clock time and date at job start Tue Mar 31 2020 06:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46897 * 109.47328 * 2 1 4 4 C 1.46898 * 111.00238 * 195.80491 * 3 2 1 5 5 C 1.50697 * 109.46875 * 66.04396 * 4 3 2 6 6 H 1.07998 * 120.00040 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99811 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99899 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 119.99919 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47139 * 89.99770 * 9 7 5 11 11 H 1.48505 * 109.47147 * 209.99410 * 9 7 5 12 12 H 1.48491 * 109.47304 * 329.99676 * 9 7 5 13 13 C 1.46905 * 111.00046 * 71.85075 * 3 2 1 14 14 H 1.08994 * 109.47212 * 58.39941 * 13 3 2 15 15 F 1.39906 * 109.47109 * 298.40290 * 13 3 2 16 16 O 1.42897 * 109.47067 * 178.40323 * 13 3 2 17 17 C 1.35744 * 117.00414 * 59.21241 * 16 13 3 18 18 C 1.39318 * 120.83382 * 4.69568 * 17 16 13 19 19 C 1.37919 * 119.12173 * 179.72996 * 18 17 16 20 20 N 1.32001 * 120.84033 * 0.54821 * 19 18 17 21 21 C 1.32045 * 121.84178 * 359.72477 * 20 19 18 22 22 Cl 1.73596 * 119.60426 * 180.02562 * 21 20 19 23 23 C 1.38165 * 120.78723 * 359.97438 * 21 20 19 24 24 H 1.09000 * 109.46770 * 53.08580 * 1 2 3 25 25 H 1.08998 * 109.46899 * 173.08410 * 1 2 3 26 26 H 1.08996 * 109.47358 * 293.08678 * 1 2 3 27 27 H 1.08996 * 109.47486 * 239.99819 * 2 1 3 28 28 H 1.09007 * 109.47087 * 119.99652 * 2 1 3 29 29 H 1.08998 * 109.47107 * 306.04492 * 4 3 2 30 30 H 1.08998 * 109.47030 * 186.04196 * 4 3 2 31 31 H 0.96996 * 119.99695 * 180.02562 * 8 7 5 32 32 H 1.08006 * 120.44123 * 359.97438 * 18 17 16 33 33 H 1.08003 * 119.58491 * 180.26935 * 19 18 17 34 34 H 1.08006 * 120.45743 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4393 1.4414 -0.3735 5 6 3.5993 1.0045 -1.8069 6 1 2.7330 0.7144 -2.3829 7 6 4.8515 0.9763 -2.3832 8 7 4.9911 0.5955 -3.6343 9 14 6.3497 1.4788 -1.3872 10 1 6.9109 0.2870 -0.7016 11 1 7.3749 2.0573 -2.2926 12 1 5.9547 2.4915 -0.3755 13 6 1.7925 2.0237 1.3032 14 1 2.2961 1.4505 2.0816 15 9 0.4196 2.0651 1.5692 16 8 2.3133 3.3542 1.2789 17 6 1.8009 4.1997 0.3487 18 6 0.7453 3.8052 -0.4705 19 6 0.2483 4.6948 -1.3999 20 7 0.7669 5.9021 -1.5258 21 6 1.7711 6.3110 -0.7722 22 17 2.4080 7.9116 -0.9869 23 6 2.3202 5.4806 0.1858 24 1 -0.3633 0.6172 -0.8217 25 1 -0.3633 -1.0202 -0.1237 26 1 -0.3634 0.4030 0.9453 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 4.0122 0.7782 0.2746 30 1 3.8040 2.4625 -0.2621 31 1 5.8721 0.5752 -4.0397 32 1 0.3192 2.8173 -0.3763 33 1 -0.5728 4.3983 -2.0358 34 1 3.1412 5.8208 0.7997 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165048959.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:28 Heat of formation + Delta-G solvation = -57.670284 kcal Electronic energy + Delta-G solvation = -21492.961471 eV Core-core repulsion = 17980.608631 eV Total energy + Delta-G solvation = -3512.352840 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.078 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.17651 -41.60387 -39.66391 -37.87674 -37.58361 -34.70304 -32.77003 -32.04256 -31.78931 -29.52550 -26.25439 -24.76342 -24.13914 -23.83911 -22.19888 -19.73260 -19.31400 -18.82563 -17.68525 -17.39125 -17.15712 -16.57331 -16.33651 -15.92494 -15.61232 -15.19105 -15.00804 -14.90972 -14.60114 -14.49926 -14.34343 -14.04639 -13.55895 -13.03390 -12.75120 -12.64187 -12.60835 -12.45789 -12.37703 -12.22344 -11.85071 -11.69542 -11.46249 -10.82636 -10.78664 -10.25645 -10.03937 -9.38049 -8.30896 -6.34425 -0.09053 0.15250 0.64759 1.31230 1.35674 1.43653 1.76908 2.30791 2.47634 2.61461 3.03310 3.32734 3.54837 3.64115 3.90274 3.96294 4.08037 4.12896 4.35069 4.48643 4.60349 4.62855 4.76756 4.82582 4.98760 5.02928 5.20317 5.27420 5.38385 5.46618 5.64203 5.87561 6.08990 6.40993 6.69257 6.72140 7.28334 8.84829 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.012322 B = 0.007346 C = 0.005421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.813540 B = 3810.503803 C = 5164.288327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 N -0.577 5.577 4 C 0.181 3.819 5 C -0.510 4.510 6 H 0.045 0.955 7 C 0.015 3.985 8 N -0.942 5.942 9 Si 0.933 3.067 10 H -0.262 1.262 11 H -0.287 1.287 12 H -0.250 1.250 13 C 0.405 3.595 14 H 0.153 0.847 15 F -0.190 7.190 16 O -0.315 6.315 17 C 0.171 3.829 18 C -0.212 4.212 19 C 0.138 3.862 20 N -0.517 5.517 21 C 0.188 3.812 22 Cl -0.021 7.021 23 C -0.192 4.192 24 H 0.050 0.950 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.051 0.949 29 H 0.004 0.996 30 H 0.030 0.970 31 H 0.266 0.734 32 H 0.167 0.833 33 H 0.192 0.808 34 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.515 5.518 12.120 15.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.069 4.069 3 N -0.311 5.311 4 C 0.055 3.945 5 C -0.548 4.548 6 H 0.064 0.936 7 C -0.183 4.183 8 N -0.582 5.582 9 Si 0.757 3.243 10 H -0.187 1.187 11 H -0.212 1.212 12 H -0.174 1.174 13 C 0.246 3.754 14 H 0.169 0.831 15 F -0.172 7.172 16 O -0.226 6.226 17 C 0.118 3.882 18 C -0.232 4.232 19 C -0.017 4.017 20 N -0.232 5.232 21 C 0.024 3.976 22 Cl 0.008 6.992 23 C -0.214 4.214 24 H 0.069 0.931 25 H 0.090 0.910 26 H 0.093 0.907 27 H 0.089 0.911 28 H 0.069 0.931 29 H 0.022 0.978 30 H 0.048 0.952 31 H 0.075 0.925 32 H 0.184 0.816 33 H 0.209 0.791 34 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -7.818 6.485 11.212 15.129 hybrid contribution 1.557 -0.877 0.757 1.941 sum -6.261 5.608 11.969 14.626 Atomic orbital electron populations 1.22058 0.93304 1.02430 1.03058 1.22050 0.96817 0.86074 1.01940 1.62014 1.21914 1.20523 1.26661 1.19820 0.83030 0.96509 0.95164 1.21055 0.93655 1.43930 0.96141 0.93637 1.25700 1.01978 0.94892 0.95737 1.70021 1.24554 1.49408 1.14256 0.85925 0.79314 0.79789 0.79296 1.18709 1.21249 1.17358 1.23695 0.76247 0.81507 0.93987 0.83116 1.92855 1.34333 1.95750 1.94229 1.86392 1.61938 1.22413 1.51882 1.19075 0.91390 0.89452 0.88301 1.22900 0.98430 1.03563 0.98333 1.22885 0.97746 0.86323 0.94777 1.67055 1.11449 1.18856 1.25829 1.21307 0.93788 0.89034 0.93486 1.98380 1.84053 1.20129 1.96668 1.21153 1.04910 0.92425 1.02917 0.93057 0.91026 0.90650 0.91078 0.93084 0.97819 0.95233 0.92461 0.81573 0.79133 0.81964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.82 9.31 71.98 0.67 -3.15 16 2 C 0.06 1.80 5.53 86.31 0.48 2.27 16 3 N -0.58 -20.16 2.54 ******* -2.58 -22.74 16 4 C 0.18 7.74 3.61 85.56 0.31 8.05 16 5 C -0.51 -27.23 8.84 25.60 0.23 -27.00 16 6 H 0.05 2.72 7.50 -2.91 -0.02 2.70 16 7 C 0.02 0.84 5.47 84.65 0.46 1.31 16 8 N -0.94 -56.86 13.96 21.45 0.30 -56.56 16 9 Si 0.93 42.09 27.47 68.60 1.88 43.97 16 10 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 11 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.25 -10.57 6.54 99.48 0.65 -9.92 16 13 C 0.41 11.57 3.71 127.69 0.47 12.05 16 14 H 0.15 3.39 8.08 -2.39 -0.02 3.37 16 15 F -0.19 -5.03 12.15 44.97 0.55 -4.48 16 16 O -0.31 -9.98 9.27 -90.68 -0.84 -10.82 16 17 C 0.17 5.65 5.99 22.76 0.14 5.79 16 18 C -0.21 -6.80 8.22 22.45 0.18 -6.61 16 19 C 0.14 4.19 11.17 84.59 0.95 5.13 16 20 N -0.52 -17.11 10.34 -186.92 -1.93 -19.04 16 21 C 0.19 5.98 7.27 84.64 0.62 6.60 16 22 Cl -0.02 -0.57 29.10 -2.72 -0.08 -0.65 16 23 C -0.19 -6.02 9.84 22.48 0.22 -5.80 16 24 H 0.05 1.41 7.94 -2.39 -0.02 1.39 16 25 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.07 1.72 5.79 -2.39 -0.01 1.71 16 27 H 0.07 2.71 6.59 -2.39 -0.02 2.69 16 28 H 0.05 1.36 8.01 -2.38 -0.02 1.34 16 29 H 0.00 0.17 7.55 -2.39 -0.02 0.15 16 30 H 0.03 1.33 5.86 -2.39 -0.01 1.32 16 31 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 32 H 0.17 5.25 4.76 -2.91 -0.01 5.23 16 33 H 0.19 4.54 8.06 -2.91 -0.02 4.51 16 34 H 0.16 4.38 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -62.84 299.19 3.09 -59.75 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: 1.07 Total: 11.95 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: 4.72 Total: -1.37 kcal Atomic # 7 Polarization: -94.14 SS G_CDS: -4.22 Total: -98.35 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: -0.84 Total: -10.82 kcal Atomic # 9 Polarization: -5.03 SS G_CDS: 0.55 Total: -4.48 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 1.88 Total: 43.97 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -0.08 Total: -0.65 kcal Total: -62.84 3.09 -59.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165048959.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.075 kcal (2) G-P(sol) polarization free energy of solvation -62.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds