Wall clock time and date at job start Tue Mar 31 2020 06:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46897 * 109.47048 * 2 1 4 4 C 1.46901 * 111.00184 * 160.65895 * 3 2 1 5 5 C 1.50705 * 109.47171 * 291.75582 * 4 3 2 6 6 H 1.08001 * 119.99513 * 4.13007 * 5 4 3 7 7 C 1.37868 * 119.99880 * 184.12800 * 5 4 3 8 8 N 1.31513 * 120.00328 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00037 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.46962 * 60.00101 * 9 7 5 11 11 H 1.48495 * 109.47006 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46896 * 299.99950 * 9 7 5 13 13 C 1.46901 * 111.00126 * 284.61377 * 3 2 1 14 14 H 1.08997 * 109.47079 * 186.46489 * 13 3 2 15 15 F 1.39896 * 109.46898 * 306.46700 * 13 3 2 16 16 O 1.42904 * 109.47041 * 66.46517 * 13 3 2 17 17 C 1.35677 * 117.00099 * 163.98282 * 16 13 3 18 18 C 1.38882 * 119.67690 * 175.00924 * 17 16 13 19 19 C 1.38418 * 119.14368 * 179.97438 * 18 17 16 20 20 C 1.38761 * 118.49624 * 0.24352 * 19 18 17 21 21 C 1.38215 * 119.28237 * 359.50848 * 20 19 18 22 22 Cl 1.73600 * 119.60598 * 180.27217 * 21 20 19 23 23 N 1.32060 * 120.79992 * 0.50349 * 21 20 19 24 24 H 1.09010 * 109.47097 * 187.70092 * 1 2 3 25 25 H 1.08999 * 109.47233 * 307.69545 * 1 2 3 26 26 H 1.09003 * 109.47636 * 67.70049 * 1 2 3 27 27 H 1.08995 * 109.46878 * 239.99945 * 2 1 3 28 28 H 1.09000 * 109.47288 * 120.00182 * 2 1 3 29 29 H 1.09001 * 109.46686 * 51.75782 * 4 3 2 30 30 H 1.09000 * 109.46950 * 171.75293 * 4 3 2 31 31 H 0.97004 * 120.00584 * 179.97438 * 8 7 5 32 32 H 1.08005 * 120.43100 * 359.97438 * 18 17 16 33 33 H 1.08001 * 120.75053 * 179.97438 * 19 18 17 34 34 H 1.08005 * 120.35986 * 179.75148 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4151 1.4500 0.4542 5 6 3.4843 1.0950 1.9172 6 1 2.5925 0.7815 2.4395 7 6 4.6860 1.1706 2.5888 8 7 5.7718 1.5529 1.9528 9 14 4.7720 0.7299 4.4020 10 1 4.3442 -0.6796 4.5896 11 1 6.1665 0.8930 4.8855 12 1 3.8734 1.6267 5.1725 13 6 1.8689 1.9967 -1.3271 14 1 2.3419 2.9786 -1.3304 15 9 2.4779 1.1823 -2.2878 16 8 0.4798 2.1361 -1.6323 17 6 0.1536 2.9722 -2.6498 18 6 -1.1690 3.0703 -3.0621 19 6 -1.4895 3.9272 -4.1008 20 6 -0.4698 4.6555 -4.6969 21 6 0.8240 4.5123 -4.2322 22 17 2.1051 5.4248 -4.9670 23 7 1.0982 3.6864 -3.2389 24 1 -0.3634 -1.0185 0.1377 25 1 -0.3633 0.6284 0.8131 26 1 -0.3634 0.3899 -0.9508 27 1 1.8932 -0.5138 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 4.0171 0.7454 -0.1196 30 1 3.7985 2.4597 0.3067 31 1 6.6173 1.6064 2.4254 32 1 -1.9376 2.4856 -2.5784 33 1 -2.5095 4.0234 -4.4426 34 1 -0.6854 5.3299 -5.5125 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165048973.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:21 Heat of formation + Delta-G solvation = -48.440735 kcal Electronic energy + Delta-G solvation = -20740.326191 eV Core-core repulsion = 17228.373574 eV Total energy + Delta-G solvation = -3511.952617 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.078 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -47.31195 -40.69365 -38.05573 -36.73829 -36.04415 -32.80537 -32.65152 -30.56848 -30.11985 -27.16532 -24.81765 -23.68915 -23.00856 -22.47535 -20.24826 -18.86398 -17.57300 -16.75472 -16.53976 -16.30185 -15.62942 -15.32199 -14.89203 -14.72008 -14.27517 -13.68213 -13.63950 -13.26766 -13.04073 -12.77844 -12.39478 -12.27875 -11.92682 -11.82678 -11.44813 -11.39249 -11.09652 -10.82299 -10.69983 -10.55423 -10.19162 -10.13449 -10.02385 -9.84795 -9.43523 -8.72003 -8.54035 -7.82907 -6.10346 -4.13352 0.74419 0.96630 1.59425 2.71880 3.31095 3.35142 3.38081 3.42077 4.13157 4.35535 4.55714 4.66751 4.75549 4.90457 5.04601 5.13792 5.26149 5.53137 5.63422 5.76413 5.81883 5.95583 5.99623 6.08548 6.43023 6.61665 6.78336 6.88847 7.03493 7.21632 7.44699 7.64081 7.82008 7.99489 8.29751 8.91947 9.50596 11.00510 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.022040 B = 0.004222 C = 0.003745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.097836 B = 6629.820364 C = 7475.243962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.048 3.952 3 N -0.530 5.530 4 C 0.195 3.805 5 C -0.511 4.511 6 H 0.067 0.933 7 C 0.058 3.942 8 N -0.895 5.895 9 Si 0.904 3.096 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.275 1.275 13 C 0.408 3.592 14 H 0.117 0.883 15 F -0.227 7.227 16 O -0.295 6.295 17 C 0.354 3.646 18 C -0.185 4.185 19 C -0.029 4.029 20 C -0.197 4.197 21 C 0.219 3.781 22 Cl -0.029 7.029 23 N -0.535 5.535 24 H 0.047 0.953 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.034 0.966 28 H 0.092 0.908 29 H 0.003 0.997 30 H 0.038 0.962 31 H 0.264 0.736 32 H 0.151 0.849 33 H 0.152 0.848 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.332 4.967 -13.295 20.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.080 4.080 3 N -0.261 5.261 4 C 0.072 3.928 5 C -0.550 4.550 6 H 0.085 0.915 7 C -0.144 4.144 8 N -0.533 5.533 9 Si 0.731 3.269 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.201 1.201 13 C 0.246 3.754 14 H 0.134 0.866 15 F -0.209 7.209 16 O -0.203 6.203 17 C 0.174 3.826 18 C -0.206 4.206 19 C -0.055 4.055 20 C -0.219 4.219 21 C 0.055 3.945 22 Cl 0.000 7.000 23 N -0.261 5.261 24 H 0.066 0.934 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.052 0.948 28 H 0.111 0.889 29 H 0.021 0.979 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.169 0.831 33 H 0.170 0.830 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -13.551 5.064 -12.544 19.148 hybrid contribution 0.292 -0.422 -0.015 0.513 sum -13.259 4.642 -12.559 18.844 Atomic orbital electron populations 1.21866 0.95733 1.00256 1.02254 1.22046 0.95101 0.88842 1.02008 1.62662 1.26997 1.19591 1.16825 1.19850 0.78833 0.97850 0.96247 1.20981 0.94766 1.45668 0.93572 0.91501 1.24978 0.95430 0.95185 0.98783 1.69950 0.99603 1.47068 1.36726 0.86467 0.77005 0.79009 0.84402 1.20137 1.21255 1.20051 1.23593 0.76318 0.94574 0.80940 0.86560 1.92916 1.82811 1.76802 1.68387 1.86471 1.29530 1.58364 1.45925 1.19636 0.89320 0.87047 0.86582 1.21213 0.94753 1.03956 1.00676 1.21385 0.99756 0.91856 0.92492 1.21657 0.91075 1.04808 1.04343 1.21251 0.88535 0.92706 0.91961 1.98421 1.51624 1.70532 1.79442 1.66569 1.37657 1.09983 1.11861 0.93362 0.92123 0.92492 0.94768 0.88929 0.97916 0.94403 0.92603 0.83100 0.83003 0.83518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.51 37.16 0.35 -2.03 16 2 C 0.05 0.96 5.47 -3.83 -0.02 0.94 16 3 N -0.53 -11.91 4.59 -241.02 -1.11 -13.01 16 4 C 0.20 5.14 4.60 -4.97 -0.02 5.12 16 5 C -0.51 -14.19 8.35 -34.44 -0.29 -14.47 16 6 H 0.07 1.82 7.30 -52.49 -0.38 1.43 16 7 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 8 N -0.89 -26.35 13.29 55.43 0.74 -25.62 16 9 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 C 0.41 8.34 3.29 60.07 0.20 8.54 16 14 H 0.12 2.44 7.20 -51.93 -0.37 2.07 16 15 F -0.23 -4.90 16.10 2.25 0.04 -4.86 16 16 O -0.30 -5.22 7.27 -18.73 -0.14 -5.36 16 17 C 0.35 5.43 7.46 -17.13 -0.13 5.31 16 18 C -0.19 -2.05 10.04 -39.28 -0.39 -2.44 16 19 C -0.03 -0.25 10.17 -39.32 -0.40 -0.65 16 20 C -0.20 -1.88 9.87 -39.40 -0.39 -2.27 16 21 C 0.22 2.87 7.27 -17.46 -0.13 2.74 16 22 Cl -0.03 -0.35 29.11 -51.86 -1.51 -1.86 16 23 N -0.53 -8.62 8.86 -10.44 -0.09 -8.71 16 24 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 25 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.06 0.92 5.94 -51.93 -0.31 0.61 16 27 H 0.03 0.70 7.09 -51.93 -0.37 0.33 16 28 H 0.09 1.98 6.68 -51.93 -0.35 1.64 16 29 H 0.00 0.08 8.10 -51.93 -0.42 -0.34 16 30 H 0.04 1.05 7.88 -51.93 -0.41 0.65 16 31 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.15 1.35 8.06 -52.48 -0.42 0.93 16 33 H 0.15 0.68 8.06 -52.49 -0.42 0.25 16 34 H 0.15 0.97 8.06 -52.48 -0.42 0.54 16 LS Contribution 310.51 15.07 4.68 4.68 Total: -1.00 -30.81 310.51 -7.59 -38.40 By element: Atomic # 1 Polarization: 1.54 SS G_CDS: -3.86 Total: -2.32 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: -1.32 Total: 2.32 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: -0.46 Total: -47.34 kcal Atomic # 8 Polarization: -5.22 SS G_CDS: -0.14 Total: -5.36 kcal Atomic # 9 Polarization: -4.90 SS G_CDS: 0.04 Total: -4.86 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -1.51 Total: -1.86 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.81 -7.59 -38.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165048973.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.043 kcal (2) G-P(sol) polarization free energy of solvation -30.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds