Wall clock time and date at job start Tue Mar 31 2020 06:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46897 * 109.47048 * 2 1 4 4 C 1.46901 * 111.00184 * 160.65895 * 3 2 1 5 5 C 1.50705 * 109.47171 * 291.75582 * 4 3 2 6 6 H 1.08001 * 119.99513 * 4.13007 * 5 4 3 7 7 C 1.37868 * 119.99880 * 184.12800 * 5 4 3 8 8 N 1.31513 * 120.00328 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00037 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.46962 * 60.00101 * 9 7 5 11 11 H 1.48495 * 109.47006 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46896 * 299.99950 * 9 7 5 13 13 C 1.46901 * 111.00126 * 284.61377 * 3 2 1 14 14 H 1.08997 * 109.47079 * 186.46489 * 13 3 2 15 15 F 1.39896 * 109.46898 * 306.46700 * 13 3 2 16 16 O 1.42904 * 109.47041 * 66.46517 * 13 3 2 17 17 C 1.35677 * 117.00099 * 163.98282 * 16 13 3 18 18 C 1.38882 * 119.67690 * 175.00924 * 17 16 13 19 19 C 1.38418 * 119.14368 * 179.97438 * 18 17 16 20 20 C 1.38761 * 118.49624 * 0.24352 * 19 18 17 21 21 C 1.38215 * 119.28237 * 359.50848 * 20 19 18 22 22 Cl 1.73600 * 119.60598 * 180.27217 * 21 20 19 23 23 N 1.32060 * 120.79992 * 0.50349 * 21 20 19 24 24 H 1.09010 * 109.47097 * 187.70092 * 1 2 3 25 25 H 1.08999 * 109.47233 * 307.69545 * 1 2 3 26 26 H 1.09003 * 109.47636 * 67.70049 * 1 2 3 27 27 H 1.08995 * 109.46878 * 239.99945 * 2 1 3 28 28 H 1.09000 * 109.47288 * 120.00182 * 2 1 3 29 29 H 1.09001 * 109.46686 * 51.75782 * 4 3 2 30 30 H 1.09000 * 109.46950 * 171.75293 * 4 3 2 31 31 H 0.97004 * 120.00584 * 179.97438 * 8 7 5 32 32 H 1.08005 * 120.43100 * 359.97438 * 18 17 16 33 33 H 1.08001 * 120.75053 * 179.97438 * 19 18 17 34 34 H 1.08005 * 120.35986 * 179.75148 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4151 1.4500 0.4542 5 6 3.4843 1.0950 1.9172 6 1 2.5925 0.7815 2.4395 7 6 4.6860 1.1706 2.5888 8 7 5.7718 1.5529 1.9528 9 14 4.7720 0.7299 4.4020 10 1 4.3442 -0.6796 4.5896 11 1 6.1665 0.8930 4.8855 12 1 3.8734 1.6267 5.1725 13 6 1.8689 1.9967 -1.3271 14 1 2.3419 2.9786 -1.3304 15 9 2.4779 1.1823 -2.2878 16 8 0.4798 2.1361 -1.6323 17 6 0.1536 2.9722 -2.6498 18 6 -1.1690 3.0703 -3.0621 19 6 -1.4895 3.9272 -4.1008 20 6 -0.4698 4.6555 -4.6969 21 6 0.8240 4.5123 -4.2322 22 17 2.1051 5.4248 -4.9670 23 7 1.0982 3.6864 -3.2389 24 1 -0.3634 -1.0185 0.1377 25 1 -0.3633 0.6284 0.8131 26 1 -0.3634 0.3899 -0.9508 27 1 1.8932 -0.5138 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 4.0171 0.7454 -0.1196 30 1 3.7985 2.4597 0.3067 31 1 6.6173 1.6064 2.4254 32 1 -1.9376 2.4856 -2.5784 33 1 -2.5095 4.0234 -4.4426 34 1 -0.6854 5.3299 -5.5125 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165048973.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:20 Heat of formation + Delta-G solvation = -70.933037 kcal Electronic energy + Delta-G solvation = -20741.301530 eV Core-core repulsion = 17228.373574 eV Total energy + Delta-G solvation = -3512.927956 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.078 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.01045 -41.71007 -39.33434 -37.94917 -37.47633 -34.76315 -33.69845 -31.82454 -31.50095 -29.08092 -26.32543 -24.66744 -24.46094 -24.06504 -21.93349 -20.10115 -18.96496 -18.46389 -18.11351 -17.44175 -16.96629 -16.72896 -16.35483 -16.10477 -15.68620 -15.39711 -14.79602 -14.78932 -14.37183 -14.27009 -14.12400 -13.68285 -13.30764 -13.15811 -12.93405 -12.68757 -12.45155 -12.42300 -12.41030 -12.23630 -11.95929 -11.70453 -11.49972 -11.05389 -10.90056 -10.67877 -9.71903 -9.68375 -8.26222 -6.38263 -0.15436 0.10657 0.67936 1.35501 1.43807 1.46122 1.54782 2.38890 2.49499 2.92227 3.07656 3.13227 3.47905 3.79122 3.93816 3.96551 4.13860 4.18097 4.36155 4.40262 4.64700 4.78908 4.86154 4.93122 5.02872 5.03250 5.16353 5.25893 5.42012 5.50155 5.72674 5.87363 6.05408 6.29097 6.47093 6.73863 7.31159 8.85580 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.022040 B = 0.004222 C = 0.003745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.097836 B = 6629.820364 C = 7475.243962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.046 3.954 3 N -0.534 5.534 4 C 0.211 3.789 5 C -0.526 4.526 6 H 0.071 0.929 7 C 0.005 3.995 8 N -0.933 5.933 9 Si 0.978 3.022 10 H -0.264 1.264 11 H -0.283 1.283 12 H -0.266 1.266 13 C 0.419 3.581 14 H 0.101 0.899 15 F -0.238 7.238 16 O -0.298 6.298 17 C 0.309 3.691 18 C -0.174 4.174 19 C -0.010 4.010 20 C -0.176 4.176 21 C 0.189 3.811 22 Cl -0.036 7.036 23 N -0.577 5.577 24 H 0.076 0.924 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.027 0.973 28 H 0.077 0.923 29 H -0.028 1.028 30 H 0.010 0.990 31 H 0.267 0.733 32 H 0.176 0.824 33 H 0.207 0.793 34 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.525 5.048 -13.531 22.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.081 4.081 3 N -0.264 5.264 4 C 0.086 3.914 5 C -0.564 4.564 6 H 0.090 0.910 7 C -0.194 4.194 8 N -0.572 5.572 9 Si 0.801 3.199 10 H -0.189 1.189 11 H -0.208 1.208 12 H -0.191 1.191 13 C 0.256 3.744 14 H 0.118 0.882 15 F -0.220 7.220 16 O -0.206 6.206 17 C 0.130 3.870 18 C -0.195 4.195 19 C -0.035 4.035 20 C -0.196 4.196 21 C 0.026 3.974 22 Cl -0.007 7.007 23 N -0.303 5.303 24 H 0.095 0.905 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.045 0.955 28 H 0.096 0.904 29 H -0.010 1.010 30 H 0.028 0.972 31 H 0.076 0.924 32 H 0.193 0.807 33 H 0.224 0.776 34 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -16.778 5.158 -12.813 21.732 hybrid contribution 1.190 -0.358 -0.119 1.248 sum -15.589 4.799 -12.933 20.816 Atomic orbital electron populations 1.21754 0.92340 1.02081 1.02512 1.22127 0.97811 0.87277 1.00877 1.62597 1.24328 1.21131 1.18361 1.19456 0.80805 0.95214 0.95896 1.21270 0.95207 1.45824 0.94139 0.91050 1.25965 0.94821 0.94713 1.03896 1.70091 1.00286 1.48005 1.38860 0.85306 0.77217 0.79259 0.78068 1.18878 1.20807 1.19101 1.23113 0.78169 0.93223 0.79904 0.88204 1.92886 1.83447 1.77026 1.68640 1.86411 1.26533 1.59931 1.47739 1.20127 0.90989 0.88410 0.87445 1.21632 0.93019 1.04011 1.00789 1.22035 1.01737 0.89375 0.90394 1.22170 0.89487 1.03974 1.04012 1.21654 0.89977 0.93362 0.92375 1.98411 1.52382 1.70559 1.79356 1.66348 1.39247 1.11316 1.13390 0.90480 0.92383 0.91838 0.95490 0.90418 1.01029 0.97152 0.92385 0.80686 0.77628 0.79973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.14 9.51 71.98 0.68 -3.45 16 2 C 0.05 1.91 5.47 86.30 0.47 2.38 16 3 N -0.53 -25.01 4.59 ******* -4.66 -29.67 16 4 C 0.21 11.76 4.60 85.56 0.39 12.15 16 5 C -0.53 -30.03 8.35 25.60 0.21 -29.82 16 6 H 0.07 3.92 7.30 -2.91 -0.02 3.90 16 7 C 0.00 0.27 5.46 84.65 0.46 0.74 16 8 N -0.93 -56.60 13.29 21.44 0.28 -56.32 16 9 Si 0.98 44.02 29.54 68.60 2.03 46.05 16 10 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 11 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 12 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 13 C 0.42 18.01 3.29 127.69 0.42 18.43 16 14 H 0.10 4.56 7.20 -2.39 -0.02 4.54 16 15 F -0.24 -10.83 16.10 44.97 0.72 -10.11 16 16 O -0.30 -10.65 7.27 -89.95 -0.65 -11.31 16 17 C 0.31 9.36 7.46 84.78 0.63 10.00 16 18 C -0.17 -3.33 10.04 22.47 0.23 -3.10 16 19 C -0.01 -0.13 10.17 22.44 0.23 0.10 16 20 C -0.18 -2.74 9.87 22.39 0.22 -2.52 16 21 C 0.19 4.80 7.27 84.65 0.62 5.41 16 22 Cl -0.04 -0.87 29.11 -2.72 -0.08 -0.95 16 23 N -0.58 -18.94 8.86 -299.79 -2.66 -21.59 16 24 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 25 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.06 1.96 5.94 -2.39 -0.01 1.94 16 27 H 0.03 1.13 7.09 -2.39 -0.02 1.12 16 28 H 0.08 3.40 6.68 -2.39 -0.02 3.38 16 29 H -0.03 -1.70 8.10 -2.39 -0.02 -1.72 16 30 H 0.01 0.62 7.88 -2.39 -0.02 0.60 16 31 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 32 H 0.18 2.42 8.06 -2.91 -0.02 2.40 16 33 H 0.21 0.33 8.06 -2.91 -0.02 0.30 16 34 H 0.18 1.52 8.06 -2.91 -0.02 1.49 16 Total: -1.00 -71.16 310.51 0.67 -70.49 By element: Atomic # 1 Polarization: 1.96 SS G_CDS: 1.12 Total: 3.08 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: 4.57 Total: 10.33 kcal Atomic # 7 Polarization: -100.55 SS G_CDS: -7.04 Total: -107.58 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: -0.65 Total: -11.31 kcal Atomic # 9 Polarization: -10.83 SS G_CDS: 0.72 Total: -10.11 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -0.08 Total: -0.95 kcal Total: -71.16 0.67 -70.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165048973.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.438 kcal (2) G-P(sol) polarization free energy of solvation -71.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds