Wall clock time and date at job start Tue Mar 31 2020 06:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46900 * 109.47190 * 2 1 4 4 C 1.46895 * 110.99946 * 297.43549 * 3 2 1 5 5 C 1.50703 * 109.46903 * 291.18048 * 4 3 2 6 6 H 1.07997 * 120.00151 * 3.90673 * 5 4 3 7 7 C 1.37885 * 119.99909 * 183.90775 * 5 4 3 8 8 N 1.31511 * 119.99938 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99877 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47234 * 90.00326 * 9 7 5 11 11 H 1.48503 * 109.47083 * 210.00057 * 9 7 5 12 12 H 1.48502 * 109.47082 * 329.99770 * 9 7 5 13 13 C 1.46896 * 110.99783 * 61.38787 * 3 2 1 14 14 H 1.09005 * 109.47725 * 298.42660 * 13 3 2 15 15 F 1.39902 * 109.47011 * 178.42998 * 13 3 2 16 16 O 1.42897 * 109.47618 * 58.42816 * 13 3 2 17 17 C 1.35675 * 116.99684 * 65.26703 * 16 13 3 18 18 C 1.38890 * 119.67905 * 176.67025 * 17 16 13 19 19 C 1.38415 * 119.14688 * 179.97438 * 18 17 16 20 20 C 1.38775 * 118.49721 * 359.97438 * 19 18 17 21 21 C 1.38219 * 119.27760 * 359.97438 * 20 19 18 22 22 Cl 1.73599 * 119.59645 * 180.02562 * 21 20 19 23 23 N 1.32055 * 120.80135 * 359.72886 * 21 20 19 24 24 H 1.08999 * 109.47216 * 299.92486 * 1 2 3 25 25 H 1.09003 * 109.47232 * 59.92390 * 1 2 3 26 26 H 1.09008 * 109.46997 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46825 * 239.99743 * 2 1 3 28 28 H 1.09000 * 109.47036 * 119.99950 * 2 1 3 29 29 H 1.09002 * 109.47657 * 51.17809 * 4 3 2 30 30 H 1.09002 * 109.47419 * 171.17705 * 4 3 2 31 31 H 0.96998 * 120.00234 * 180.02562 * 8 7 5 32 32 H 1.07996 * 120.42620 * 359.97143 * 18 17 16 33 33 H 1.07998 * 120.75294 * 180.02562 * 19 18 17 34 34 H 1.08000 * 120.35528 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5995 2.0919 -1.2171 5 6 2.3247 1.5181 -2.4070 6 1 2.9794 0.6683 -2.2821 7 6 2.1523 2.0779 -3.6553 8 7 2.7848 1.5769 -4.6937 9 14 1.0193 3.5473 -3.8714 10 1 1.7942 4.8009 -3.6896 11 1 0.4310 3.5223 -5.2347 12 1 -0.0681 3.4865 -2.8619 13 6 1.5760 2.1002 1.2039 14 1 0.4868 2.1390 1.2229 15 9 2.0887 3.4018 1.1887 16 8 2.0485 1.4157 2.3660 17 6 3.3916 1.3755 2.5536 18 6 3.9085 0.7855 3.6997 19 6 5.2804 0.7501 3.8797 20 6 6.0912 1.3085 2.9015 21 6 5.5087 1.8785 1.7851 22 17 6.5150 2.5788 0.5561 23 7 4.1963 1.8916 1.6394 24 1 -0.3633 0.5127 0.8906 25 1 -0.3634 0.5150 -0.8893 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.5248 1.9721 -1.3543 30 1 1.8377 3.1514 -1.1226 31 1 2.6639 1.9709 -5.5718 32 1 3.2485 0.3599 4.4410 33 1 5.7103 0.2974 4.7609 34 1 7.1655 1.2978 3.0115 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165048974.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:22 Heat of formation + Delta-G solvation = -34.588967 kcal Electronic energy + Delta-G solvation = -21453.139735 eV Core-core repulsion = 17941.787776 eV Total energy + Delta-G solvation = -3511.351959 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.078 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -47.32943 -40.41603 -38.17091 -36.54146 -36.08482 -32.47957 -32.45118 -30.37284 -29.69820 -27.63913 -24.98439 -23.50189 -23.18857 -22.37020 -19.91252 -18.30802 -17.60608 -16.97635 -16.32428 -16.16699 -15.78470 -15.19212 -14.66830 -14.63397 -14.13626 -13.70134 -13.36964 -13.33717 -12.84031 -12.73731 -12.44671 -12.22448 -12.10855 -11.89341 -11.54892 -11.21069 -11.03371 -10.95782 -10.70626 -10.54667 -10.10215 -9.95490 -9.77484 -9.44679 -9.30832 -8.55708 -8.49913 -7.54957 -6.03138 -3.99793 1.03366 1.27979 2.03612 2.97479 3.30487 3.36921 3.38696 3.75135 4.21326 4.43385 4.53058 4.74796 4.95113 4.96134 5.10316 5.28376 5.33810 5.44492 5.53259 5.72810 5.82728 5.86070 6.03562 6.13887 6.19184 6.34999 6.61338 6.80329 6.87905 7.13464 7.44408 7.74485 7.86008 7.90277 8.62262 9.05225 9.57471 11.09914 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.016639 B = 0.006597 C = 0.005420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.394889 B = 4243.278547 C = 5165.181244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.067 3.933 3 N -0.542 5.542 4 C 0.163 3.837 5 C -0.499 4.499 6 H 0.081 0.919 7 C 0.071 3.929 8 N -0.898 5.898 9 Si 0.872 3.128 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.269 1.269 13 C 0.415 3.585 14 H 0.112 0.888 15 F -0.191 7.191 16 O -0.314 6.314 17 C 0.348 3.652 18 C -0.194 4.194 19 C -0.038 4.038 20 C -0.199 4.199 21 C 0.218 3.782 22 Cl -0.024 7.024 23 N -0.476 5.476 24 H 0.043 0.957 25 H 0.069 0.931 26 H 0.058 0.942 27 H 0.096 0.904 28 H 0.059 0.941 29 H -0.002 1.002 30 H 0.033 0.967 31 H 0.263 0.737 32 H 0.144 0.856 33 H 0.147 0.853 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.968 -1.836 17.729 17.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.061 4.061 3 N -0.274 5.274 4 C 0.038 3.962 5 C -0.537 4.537 6 H 0.099 0.901 7 C -0.131 4.131 8 N -0.538 5.538 9 Si 0.699 3.301 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.194 1.194 13 C 0.255 3.745 14 H 0.128 0.872 15 F -0.172 7.172 16 O -0.222 6.222 17 C 0.168 3.832 18 C -0.215 4.215 19 C -0.064 4.064 20 C -0.220 4.220 21 C 0.053 3.947 22 Cl 0.004 6.996 23 N -0.198 5.198 24 H 0.062 0.938 25 H 0.087 0.913 26 H 0.077 0.923 27 H 0.114 0.886 28 H 0.078 0.922 29 H 0.015 0.985 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.162 0.838 33 H 0.165 0.835 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.007 -1.430 16.847 17.027 hybrid contribution -0.960 0.750 0.036 1.219 sum 1.047 -0.680 16.884 16.930 Atomic orbital electron populations 1.22446 0.98988 1.02120 1.01617 1.21960 0.92147 0.89178 1.02809 1.62114 1.60793 1.02914 1.01581 1.20221 0.94386 0.94650 0.86912 1.20843 1.27021 1.16478 0.89351 0.90100 1.24836 0.95640 0.96743 0.95870 1.69878 1.42739 1.41500 0.99637 0.86922 0.81645 0.84084 0.77444 1.20033 1.21214 1.19427 1.23154 0.93480 0.74549 0.83337 0.87162 1.92924 1.89584 1.38612 1.96091 1.86582 1.18073 1.72200 1.45359 1.19418 0.83786 0.90939 0.89014 1.21122 0.96077 1.06017 0.98325 1.21271 0.92046 0.95034 0.98025 1.21680 1.01792 1.03849 0.94710 1.21357 0.88711 0.94762 0.89837 1.98431 1.64468 1.82315 1.54343 1.66868 1.04180 1.19844 1.28903 0.93791 0.91258 0.92284 0.88620 0.92232 0.98480 0.94924 0.92677 0.83848 0.83512 0.83902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.07 9.25 37.16 0.34 -2.73 16 2 C 0.07 1.24 5.76 -3.82 -0.02 1.22 16 3 N -0.54 -11.48 3.81 -241.02 -0.92 -12.39 16 4 C 0.16 3.96 3.57 -4.98 -0.02 3.94 16 5 C -0.50 -14.15 9.14 -34.44 -0.31 -14.46 16 6 H 0.08 2.52 7.41 -52.49 -0.39 2.13 16 7 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 8 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 9 Si 0.87 21.73 27.39 -169.99 -4.66 17.08 16 10 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.27 -6.40 6.66 56.52 0.38 -6.02 16 13 C 0.42 7.68 3.37 60.06 0.20 7.89 16 14 H 0.11 1.78 6.42 -51.93 -0.33 1.45 16 15 F -0.19 -3.94 15.24 2.25 0.03 -3.90 16 16 O -0.31 -5.26 9.38 -18.73 -0.18 -5.43 16 17 C 0.35 5.74 7.13 -17.12 -0.12 5.61 16 18 C -0.19 -2.38 10.04 -39.27 -0.39 -2.77 16 19 C -0.04 -0.39 10.17 -39.32 -0.40 -0.79 16 20 C -0.20 -2.40 9.87 -39.39 -0.39 -2.79 16 21 C 0.22 3.57 7.27 -17.46 -0.13 3.44 16 22 Cl -0.02 -0.40 29.10 -51.86 -1.51 -1.91 16 23 N -0.48 -8.96 7.88 -10.43 -0.08 -9.04 16 24 H 0.04 0.62 6.47 -51.93 -0.34 0.29 16 25 H 0.07 1.23 6.28 -51.93 -0.33 0.91 16 26 H 0.06 0.82 8.14 -51.92 -0.42 0.40 16 27 H 0.10 2.00 6.91 -51.93 -0.36 1.64 16 28 H 0.06 1.02 7.48 -51.93 -0.39 0.63 16 29 H 0.00 -0.05 5.30 -51.93 -0.28 -0.33 16 30 H 0.03 0.84 6.49 -51.93 -0.34 0.50 16 31 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 32 H 0.14 1.37 8.06 -52.49 -0.42 0.94 16 33 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 34 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 302.04 15.07 4.55 4.55 Total: -1.00 -32.38 302.04 -6.91 -39.30 By element: Atomic # 1 Polarization: 1.68 SS G_CDS: -3.60 Total: -1.92 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -1.34 Total: 0.51 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: -0.23 Total: -48.27 kcal Atomic # 8 Polarization: -5.26 SS G_CDS: -0.18 Total: -5.43 kcal Atomic # 9 Polarization: -3.94 SS G_CDS: 0.03 Total: -3.90 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.66 Total: 17.08 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.51 Total: -1.91 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.38 -6.91 -39.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165048974.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.706 kcal (2) G-P(sol) polarization free energy of solvation -32.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds