Wall clock time and date at job start Tue Mar 31 2020 06:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46900 * 109.47190 * 2 1 4 4 C 1.46895 * 110.99946 * 297.43549 * 3 2 1 5 5 C 1.50703 * 109.46903 * 291.18048 * 4 3 2 6 6 H 1.07997 * 120.00151 * 3.90673 * 5 4 3 7 7 C 1.37885 * 119.99909 * 183.90775 * 5 4 3 8 8 N 1.31511 * 119.99938 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99877 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47234 * 90.00326 * 9 7 5 11 11 H 1.48503 * 109.47083 * 210.00057 * 9 7 5 12 12 H 1.48502 * 109.47082 * 329.99770 * 9 7 5 13 13 C 1.46896 * 110.99783 * 61.38787 * 3 2 1 14 14 H 1.09005 * 109.47725 * 298.42660 * 13 3 2 15 15 F 1.39902 * 109.47011 * 178.42998 * 13 3 2 16 16 O 1.42897 * 109.47618 * 58.42816 * 13 3 2 17 17 C 1.35675 * 116.99684 * 65.26703 * 16 13 3 18 18 C 1.38890 * 119.67905 * 176.67025 * 17 16 13 19 19 C 1.38415 * 119.14688 * 179.97438 * 18 17 16 20 20 C 1.38775 * 118.49721 * 359.97438 * 19 18 17 21 21 C 1.38219 * 119.27760 * 359.97438 * 20 19 18 22 22 Cl 1.73599 * 119.59645 * 180.02562 * 21 20 19 23 23 N 1.32055 * 120.80135 * 359.72886 * 21 20 19 24 24 H 1.08999 * 109.47216 * 299.92486 * 1 2 3 25 25 H 1.09003 * 109.47232 * 59.92390 * 1 2 3 26 26 H 1.09008 * 109.46997 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46825 * 239.99743 * 2 1 3 28 28 H 1.09000 * 109.47036 * 119.99950 * 2 1 3 29 29 H 1.09002 * 109.47657 * 51.17809 * 4 3 2 30 30 H 1.09002 * 109.47419 * 171.17705 * 4 3 2 31 31 H 0.96998 * 120.00234 * 180.02562 * 8 7 5 32 32 H 1.07996 * 120.42620 * 359.97143 * 18 17 16 33 33 H 1.07998 * 120.75294 * 180.02562 * 19 18 17 34 34 H 1.08000 * 120.35528 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5995 2.0919 -1.2171 5 6 2.3247 1.5181 -2.4070 6 1 2.9794 0.6683 -2.2821 7 6 2.1523 2.0779 -3.6553 8 7 2.7848 1.5769 -4.6937 9 14 1.0193 3.5473 -3.8714 10 1 1.7942 4.8009 -3.6896 11 1 0.4310 3.5223 -5.2347 12 1 -0.0681 3.4865 -2.8619 13 6 1.5760 2.1002 1.2039 14 1 0.4868 2.1390 1.2229 15 9 2.0887 3.4018 1.1887 16 8 2.0485 1.4157 2.3660 17 6 3.3916 1.3755 2.5536 18 6 3.9085 0.7855 3.6997 19 6 5.2804 0.7501 3.8797 20 6 6.0912 1.3085 2.9015 21 6 5.5087 1.8785 1.7851 22 17 6.5150 2.5788 0.5561 23 7 4.1963 1.8916 1.6394 24 1 -0.3633 0.5127 0.8906 25 1 -0.3634 0.5150 -0.8893 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.5248 1.9721 -1.3543 30 1 1.8377 3.1514 -1.1226 31 1 2.6639 1.9709 -5.5718 32 1 3.2485 0.3599 4.4410 33 1 5.7103 0.2974 4.7609 34 1 7.1655 1.2978 3.0115 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165048974.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:22 Heat of formation + Delta-G solvation = -58.914267 kcal Electronic energy + Delta-G solvation = -21454.194559 eV Core-core repulsion = 17941.787776 eV Total energy + Delta-G solvation = -3512.406784 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.078 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.83712 -41.54112 -39.49300 -37.96206 -37.34312 -34.65534 -33.49929 -31.46971 -31.32768 -29.43873 -26.38483 -24.86276 -24.45601 -23.84795 -21.50843 -19.59723 -19.08442 -18.73747 -17.86083 -17.50082 -16.85877 -16.62827 -16.13391 -15.92718 -15.88364 -15.21481 -14.92482 -14.48272 -14.25508 -14.12063 -14.08528 -13.78744 -13.42538 -13.32511 -13.04127 -12.64497 -12.59979 -12.39319 -12.25471 -12.19996 -11.90817 -11.64574 -11.49431 -10.85386 -10.78051 -10.58586 -9.61532 -9.12800 -8.28273 -6.30120 -0.02362 0.30577 0.89483 1.31553 1.34540 1.42839 1.74884 2.32476 2.65934 2.73839 3.05985 3.35399 3.48935 3.93876 3.99634 4.04473 4.10952 4.24188 4.38913 4.43746 4.49187 4.60184 4.78712 4.90579 4.96496 5.10626 5.13963 5.30969 5.34083 5.49465 5.79974 5.84888 6.28623 6.48685 6.73377 6.76832 7.31063 8.88463 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.016639 B = 0.006597 C = 0.005420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.394889 B = 4243.278547 C = 5165.181244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.072 3.928 3 N -0.564 5.564 4 C 0.178 3.822 5 C -0.500 4.500 6 H 0.035 0.965 7 C 0.011 3.989 8 N -0.946 5.946 9 Si 0.940 3.060 10 H -0.275 1.275 11 H -0.278 1.278 12 H -0.246 1.246 13 C 0.417 3.583 14 H 0.141 0.859 15 F -0.208 7.208 16 O -0.309 6.309 17 C 0.310 3.690 18 C -0.179 4.179 19 C -0.021 4.021 20 C -0.182 4.182 21 C 0.183 3.817 22 Cl -0.051 7.051 23 N -0.526 5.526 24 H 0.067 0.933 25 H 0.048 0.952 26 H 0.081 0.919 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.012 0.988 30 H 0.020 0.980 31 H 0.266 0.734 32 H 0.177 0.823 33 H 0.202 0.798 34 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.870 -2.071 20.953 21.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.055 4.055 3 N -0.296 5.296 4 C 0.052 3.948 5 C -0.539 4.539 6 H 0.053 0.947 7 C -0.186 4.186 8 N -0.587 5.587 9 Si 0.764 3.236 10 H -0.200 1.200 11 H -0.204 1.204 12 H -0.169 1.169 13 C 0.257 3.743 14 H 0.157 0.843 15 F -0.189 7.189 16 O -0.217 6.217 17 C 0.131 3.869 18 C -0.199 4.199 19 C -0.046 4.046 20 C -0.203 4.203 21 C 0.019 3.981 22 Cl -0.022 7.022 23 N -0.249 5.249 24 H 0.086 0.914 25 H 0.067 0.933 26 H 0.100 0.900 27 H 0.077 0.923 28 H 0.093 0.907 29 H 0.029 0.971 30 H 0.038 0.962 31 H 0.075 0.925 32 H 0.195 0.805 33 H 0.219 0.781 34 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 0.915 -1.680 20.106 20.197 hybrid contribution -0.476 0.684 -0.824 1.172 sum 0.438 -0.996 19.282 19.312 Atomic orbital electron populations 1.22341 0.96393 1.03725 1.01704 1.21859 0.94232 0.87700 1.01740 1.61840 1.62352 1.03887 1.01566 1.19862 0.94313 0.93715 0.86906 1.21014 1.26323 1.15151 0.91395 0.94687 1.25737 0.97460 0.99978 0.95419 1.70034 1.44860 1.43491 1.00320 0.85829 0.79980 0.79588 0.78247 1.20039 1.20357 1.16908 1.23293 0.94717 0.73642 0.82683 0.84250 1.92890 1.90004 1.39853 1.96174 1.86561 1.18789 1.72214 1.44099 1.19922 0.83348 0.93092 0.90508 1.21605 0.97520 1.03844 0.96922 1.21921 0.90923 0.93112 0.98648 1.22097 1.03612 1.01536 0.93080 1.21668 0.88288 0.97111 0.91036 1.98409 1.64938 1.83016 1.55858 1.66584 1.05697 1.21614 1.30976 0.91373 0.93251 0.90014 0.92269 0.90664 0.97066 0.96237 0.92495 0.80537 0.78116 0.80977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.48 9.25 71.98 0.67 -4.82 16 2 C 0.07 2.68 5.76 86.30 0.50 3.17 16 3 N -0.56 -24.07 3.81 ******* -3.87 -27.94 16 4 C 0.18 8.73 3.57 85.56 0.31 9.04 16 5 C -0.50 -29.61 9.14 25.60 0.23 -29.38 16 6 H 0.03 2.33 7.41 -2.91 -0.02 2.31 16 7 C 0.01 0.67 5.47 84.66 0.46 1.14 16 8 N -0.95 -60.38 13.96 21.45 0.30 -60.08 16 9 Si 0.94 45.27 27.39 68.60 1.88 47.15 16 10 H -0.27 -13.19 7.11 99.48 0.71 -12.48 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 12 H -0.25 -10.80 6.66 99.48 0.66 -10.14 16 13 C 0.42 14.99 3.37 127.69 0.43 15.42 16 14 H 0.14 4.15 6.42 -2.38 -0.02 4.13 16 15 F -0.21 -8.56 15.24 44.97 0.69 -7.88 16 16 O -0.31 -9.78 9.38 -89.92 -0.84 -10.63 16 17 C 0.31 9.76 7.13 84.78 0.60 10.36 16 18 C -0.18 -3.68 10.04 22.47 0.23 -3.46 16 19 C -0.02 -0.33 10.17 22.44 0.23 -0.10 16 20 C -0.18 -3.90 9.87 22.39 0.22 -3.68 16 21 C 0.18 5.94 7.27 84.65 0.62 6.55 16 22 Cl -0.05 -1.75 29.10 -2.72 -0.08 -1.83 16 23 N -0.53 -19.87 7.88 -299.78 -2.36 -22.23 16 24 H 0.07 1.71 6.47 -2.39 -0.02 1.70 16 25 H 0.05 1.68 6.28 -2.39 -0.01 1.66 16 26 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 27 H 0.06 2.60 6.91 -2.39 -0.02 2.59 16 28 H 0.07 2.53 7.48 -2.39 -0.02 2.51 16 29 H 0.01 0.55 5.30 -2.39 -0.01 0.53 16 30 H 0.02 1.01 6.49 -2.39 -0.02 0.99 16 31 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 32 H 0.18 2.42 8.06 -2.91 -0.02 2.40 16 33 H 0.20 1.04 8.06 -2.91 -0.02 1.02 16 34 H 0.17 2.59 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -75.80 302.04 1.29 -74.51 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: 1.09 Total: 4.68 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: 4.49 Total: 4.25 kcal Atomic # 7 Polarization: -104.33 SS G_CDS: -5.93 Total: -110.26 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: -0.84 Total: -10.63 kcal Atomic # 9 Polarization: -8.56 SS G_CDS: 0.69 Total: -7.88 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.88 Total: 47.15 kcal Atomic # 17 Polarization: -1.75 SS G_CDS: -0.08 Total: -1.83 kcal Total: -75.80 1.29 -74.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165048974.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.595 kcal (2) G-P(sol) polarization free energy of solvation -75.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds