Wall clock time and date at job start Tue Mar 31 2020 06:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36904 * 120.00020 * 2 1 4 4 H 1.08003 * 120.00045 * 204.31651 * 3 2 1 5 5 C 1.38818 * 120.00228 * 24.32675 * 3 2 1 6 6 N 1.31568 * 119.99695 * 10.43620 * 5 3 2 7 7 Si 1.86794 * 120.00250 * 190.43939 * 5 3 2 8 8 H 1.48498 * 109.47002 * 359.97438 * 7 5 3 9 9 H 1.48501 * 109.47189 * 119.99290 * 7 5 3 10 10 H 1.48493 * 109.47490 * 239.99682 * 7 5 3 11 11 C 1.38853 * 119.99736 * 180.02562 * 2 1 3 12 12 C 1.38995 * 119.64765 * 185.29651 * 11 2 1 13 13 C 1.39482 * 118.97534 * 180.24562 * 12 11 2 14 14 C 1.48390 * 120.85226 * 179.73149 * 13 12 11 15 15 C 1.39336 * 120.11953 * 179.72498 * 14 13 12 16 16 C 1.38016 * 119.87479 * 179.97438 * 15 14 13 17 17 C 1.38327 * 120.12088 * 359.97438 * 16 15 14 18 18 C 1.38313 * 120.24478 * 0.04334 * 17 16 15 19 19 C 1.38018 * 120.12501 * 0.02562 * 18 17 16 20 20 C 1.39911 * 118.29217 * 359.46690 * 13 12 11 21 21 C 1.38078 * 119.18961 * 0.27151 * 20 13 12 22 22 Cl 1.73595 * 119.52308 * 180.02562 * 21 20 13 23 23 N 1.32035 * 120.95146 * 359.97438 * 21 20 13 24 24 H 1.09001 * 109.47026 * 273.55045 * 1 2 3 25 25 H 1.09005 * 109.47113 * 33.54518 * 1 2 3 26 26 H 1.09000 * 109.47237 * 153.54636 * 1 2 3 27 27 H 0.97001 * 119.99910 * 180.02562 * 6 5 3 28 28 H 1.08000 * 120.50897 * 359.97438 * 12 11 2 29 29 H 1.08001 * 120.06526 * 0.25393 * 15 14 13 30 30 H 1.08005 * 119.94098 * 180.02562 * 16 15 14 31 31 H 1.08007 * 119.87609 * 180.02562 * 17 16 15 32 32 H 1.08005 * 119.93473 * 179.97438 * 18 17 16 33 33 H 1.07995 * 120.06089 * 179.97438 * 19 18 17 34 34 H 1.08001 * 120.40854 * 180.29112 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1495 1.1856 0.0000 4 1 3.1577 1.2271 -0.3851 5 6 1.5479 2.3345 0.4952 6 7 0.4091 2.2512 1.1488 7 14 2.3552 3.9986 0.2337 8 1 3.6194 3.8216 -0.5251 9 1 1.4369 4.8793 -0.5321 10 1 2.6513 4.6176 1.5505 11 6 2.1592 -1.2025 -0.0005 12 6 3.5447 -1.1967 0.1110 13 6 4.2283 -2.4125 0.1037 14 6 5.7075 -2.4545 0.2143 15 6 6.3744 -3.6778 0.2112 16 6 7.7503 -3.7110 0.3138 17 6 8.4671 -2.5326 0.4190 18 6 7.8102 -1.3155 0.4230 19 6 6.4344 -1.2706 0.3223 20 6 3.4831 -3.5916 -0.0049 21 6 2.1083 -3.5125 -0.1060 22 17 1.1751 -4.9701 -0.2405 23 7 1.4931 -2.3442 -0.1010 24 1 -0.3633 0.0636 1.0257 25 1 -0.3633 0.8565 -0.5679 26 1 -0.3634 -0.9201 -0.4578 27 1 -0.0115 3.0540 1.4945 28 1 4.0838 -0.2649 0.1975 29 1 5.8161 -4.5982 0.1241 30 1 8.2684 -4.6587 0.3111 31 1 9.5438 -2.5632 0.4987 32 1 8.3748 -0.3985 0.5058 33 1 5.9225 -0.3197 0.3259 34 1 3.9770 -4.5520 -0.0092 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166798619.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:43 Heat of formation + Delta-G solvation = 67.600871 kcal Electronic energy + Delta-G solvation = -19517.466124 eV Core-core repulsion = 16441.314674 eV Total energy + Delta-G solvation = -3076.151451 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.69838 -38.50152 -36.39854 -35.61239 -33.06237 -31.97655 -30.90625 -29.25094 -28.90712 -26.59369 -24.45908 -23.34815 -22.45184 -21.31340 -20.16169 -17.83460 -17.20016 -16.11468 -15.68227 -15.28645 -14.93098 -14.37601 -14.25724 -14.04365 -13.88813 -13.36572 -13.00707 -12.89542 -12.73470 -12.55860 -11.77101 -11.46206 -11.34606 -11.09360 -11.02864 -10.86998 -10.77036 -10.63043 -10.51694 -10.35663 -9.89025 -9.37906 -8.79827 -8.70768 -8.59424 -7.95638 -7.02795 -6.55872 -4.02935 1.06702 1.56062 2.08487 2.50366 2.52100 3.03022 3.07269 3.11213 3.85179 4.00960 4.57155 4.60094 4.92987 5.00263 5.04532 5.08396 5.26210 5.57728 5.63930 5.81416 6.01234 6.04767 6.08458 6.16112 6.39055 6.50428 6.60813 6.63550 6.68892 6.78339 6.89164 7.12769 7.14315 7.20240 7.26239 7.34722 7.76358 8.26338 8.73856 9.02388 9.49599 10.39863 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.011328 B = 0.006360 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.187302 B = 4401.764459 C = 6800.593204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.409 5.409 3 C -0.312 4.312 4 H 0.100 0.900 5 C 0.035 3.965 6 N -0.860 5.860 7 Si 0.932 3.068 8 H -0.265 1.265 9 H -0.277 1.277 10 H -0.277 1.277 11 C 0.379 3.621 12 C -0.228 4.228 13 C 0.036 3.964 14 C -0.031 4.031 15 C -0.106 4.106 16 C -0.125 4.125 17 C -0.126 4.126 18 C -0.122 4.122 19 C -0.104 4.104 20 C -0.278 4.278 21 C 0.248 3.752 22 Cl -0.071 7.071 23 N -0.569 5.569 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.046 0.954 27 H 0.273 0.727 28 H 0.133 0.867 29 H 0.126 0.874 30 H 0.120 0.880 31 H 0.117 0.883 32 H 0.121 0.879 33 H 0.130 0.870 34 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.717 -6.743 -1.438 11.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.095 5.095 3 C -0.441 4.441 4 H 0.118 0.882 5 C -0.172 4.172 6 N -0.494 5.494 7 Si 0.757 3.243 8 H -0.189 1.189 9 H -0.202 1.202 10 H -0.203 1.203 11 C 0.137 3.863 12 C -0.255 4.255 13 C 0.029 3.971 14 C -0.031 4.031 15 C -0.125 4.125 16 C -0.143 4.143 17 C -0.144 4.144 18 C -0.140 4.140 19 C -0.122 4.122 20 C -0.306 4.306 21 C 0.078 3.922 22 Cl -0.043 7.043 23 N -0.293 5.293 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.065 0.935 27 H 0.084 0.916 28 H 0.151 0.849 29 H 0.144 0.856 30 H 0.138 0.862 31 H 0.135 0.865 32 H 0.139 0.861 33 H 0.147 0.853 34 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 8.355 -6.284 -1.405 10.548 hybrid contribution 0.930 0.705 0.055 1.168 sum 9.285 -5.579 -1.350 10.916 Atomic orbital electron populations 1.21447 0.79430 0.99260 1.01908 1.42585 1.05369 1.00992 1.60596 1.19710 1.00997 0.83859 1.39525 0.88201 1.25481 0.96522 1.00495 0.94749 1.70104 1.17015 1.30151 1.32163 0.85769 0.79327 0.80711 0.78445 1.18932 1.20234 1.20310 1.17952 0.88043 0.84939 0.95321 1.21274 0.93510 0.97790 1.12898 1.18495 0.90709 0.92596 0.95283 1.18807 0.91815 0.93293 0.99158 1.21283 0.94222 0.97537 0.99412 1.21043 0.94032 0.98105 1.01084 1.21146 0.99575 0.92718 1.01002 1.21076 0.94353 0.97850 1.00714 1.21393 0.93925 0.98320 0.98603 1.20771 0.91662 0.98112 1.20041 1.20700 0.87519 0.86891 0.97050 1.98327 1.75823 1.33845 1.96287 1.66103 1.40787 0.96518 1.25871 0.92282 0.92151 0.93515 0.91650 0.84889 0.85579 0.86221 0.86457 0.86099 0.85257 0.86035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.94 8.78 59.85 0.53 3.47 16 2 N -0.41 -10.21 3.12 -122.48 -0.38 -10.59 16 3 C -0.31 -7.74 8.89 -15.07 -0.13 -7.88 16 4 H 0.10 2.36 6.35 -52.48 -0.33 2.02 16 5 C 0.03 0.84 5.14 -17.45 -0.09 0.75 16 6 N -0.86 -21.83 10.66 55.49 0.59 -21.24 16 7 Si 0.93 18.74 29.57 -169.99 -5.03 13.71 16 8 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 9 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 10 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 11 C 0.38 9.00 7.33 -155.08 -1.14 7.86 16 12 C -0.23 -4.88 8.65 -38.84 -0.34 -5.21 16 13 C 0.04 0.69 5.91 -104.63 -0.62 0.07 16 14 C -0.03 -0.50 5.88 -104.90 -0.62 -1.12 16 15 C -0.11 -1.48 9.45 -39.25 -0.37 -1.85 16 16 C -0.12 -1.48 10.03 -39.63 -0.40 -1.88 16 17 C -0.13 -1.46 10.04 -39.52 -0.40 -1.85 16 18 C -0.12 -1.54 10.03 -39.63 -0.40 -1.94 16 19 C -0.10 -1.58 9.45 -39.25 -0.37 -1.95 16 20 C -0.28 -5.17 9.26 -39.01 -0.36 -5.53 16 21 C 0.25 5.04 7.26 -17.52 -0.13 4.91 16 22 Cl -0.07 -1.22 29.10 -51.86 -1.51 -2.73 16 23 N -0.57 -13.10 8.98 -9.62 -0.09 -13.18 16 24 H 0.06 1.49 7.41 -51.93 -0.38 1.10 16 25 H 0.06 1.46 7.25 -51.93 -0.38 1.08 16 26 H 0.05 1.06 7.18 -51.93 -0.37 0.69 16 27 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 28 H 0.13 2.76 4.57 -52.49 -0.24 2.52 16 29 H 0.13 1.59 6.29 -52.49 -0.33 1.26 16 30 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 31 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 32 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 33 H 0.13 1.96 6.29 -52.49 -0.33 1.63 16 34 H 0.12 1.93 6.33 -52.49 -0.33 1.60 16 LS Contribution 303.02 15.07 4.57 4.57 Total: -1.00 -26.76 303.02 -9.78 -36.54 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -3.10 Total: 5.08 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: -4.83 Total: -12.15 kcal Atomic # 7 Polarization: -45.14 SS G_CDS: 0.12 Total: -45.01 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.71 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -1.51 Total: -2.73 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -26.76 -9.78 -36.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166798619.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.141 kcal (2) G-P(sol) polarization free energy of solvation -26.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds