Wall clock time and date at job start Tue Mar 31 2020 06:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36904 * 120.00020 * 2 1 4 4 H 1.08003 * 120.00045 * 204.31651 * 3 2 1 5 5 C 1.38818 * 120.00228 * 24.32675 * 3 2 1 6 6 N 1.31568 * 119.99695 * 10.43620 * 5 3 2 7 7 Si 1.86794 * 120.00250 * 190.43939 * 5 3 2 8 8 H 1.48498 * 109.47002 * 359.97438 * 7 5 3 9 9 H 1.48501 * 109.47189 * 119.99290 * 7 5 3 10 10 H 1.48493 * 109.47490 * 239.99682 * 7 5 3 11 11 C 1.38853 * 119.99736 * 180.02562 * 2 1 3 12 12 C 1.38995 * 119.64765 * 185.29651 * 11 2 1 13 13 C 1.39482 * 118.97534 * 180.24562 * 12 11 2 14 14 C 1.48390 * 120.85226 * 179.73149 * 13 12 11 15 15 C 1.39336 * 120.11953 * 179.72498 * 14 13 12 16 16 C 1.38016 * 119.87479 * 179.97438 * 15 14 13 17 17 C 1.38327 * 120.12088 * 359.97438 * 16 15 14 18 18 C 1.38313 * 120.24478 * 0.04334 * 17 16 15 19 19 C 1.38018 * 120.12501 * 0.02562 * 18 17 16 20 20 C 1.39911 * 118.29217 * 359.46690 * 13 12 11 21 21 C 1.38078 * 119.18961 * 0.27151 * 20 13 12 22 22 Cl 1.73595 * 119.52308 * 180.02562 * 21 20 13 23 23 N 1.32035 * 120.95146 * 359.97438 * 21 20 13 24 24 H 1.09001 * 109.47026 * 273.55045 * 1 2 3 25 25 H 1.09005 * 109.47113 * 33.54518 * 1 2 3 26 26 H 1.09000 * 109.47237 * 153.54636 * 1 2 3 27 27 H 0.97001 * 119.99910 * 180.02562 * 6 5 3 28 28 H 1.08000 * 120.50897 * 359.97438 * 12 11 2 29 29 H 1.08001 * 120.06526 * 0.25393 * 15 14 13 30 30 H 1.08005 * 119.94098 * 180.02562 * 16 15 14 31 31 H 1.08007 * 119.87609 * 180.02562 * 17 16 15 32 32 H 1.08005 * 119.93473 * 179.97438 * 18 17 16 33 33 H 1.07995 * 120.06089 * 179.97438 * 19 18 17 34 34 H 1.08001 * 120.40854 * 180.29112 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1495 1.1856 0.0000 4 1 3.1577 1.2271 -0.3851 5 6 1.5479 2.3345 0.4952 6 7 0.4091 2.2512 1.1488 7 14 2.3552 3.9986 0.2337 8 1 3.6194 3.8216 -0.5251 9 1 1.4369 4.8793 -0.5321 10 1 2.6513 4.6176 1.5505 11 6 2.1592 -1.2025 -0.0005 12 6 3.5447 -1.1967 0.1110 13 6 4.2283 -2.4125 0.1037 14 6 5.7075 -2.4545 0.2143 15 6 6.3744 -3.6778 0.2112 16 6 7.7503 -3.7110 0.3138 17 6 8.4671 -2.5326 0.4190 18 6 7.8102 -1.3155 0.4230 19 6 6.4344 -1.2706 0.3223 20 6 3.4831 -3.5916 -0.0049 21 6 2.1083 -3.5125 -0.1060 22 17 1.1751 -4.9701 -0.2405 23 7 1.4931 -2.3442 -0.1010 24 1 -0.3633 0.0636 1.0257 25 1 -0.3633 0.8565 -0.5679 26 1 -0.3634 -0.9201 -0.4578 27 1 -0.0115 3.0540 1.4945 28 1 4.0838 -0.2649 0.1975 29 1 5.8161 -4.5982 0.1241 30 1 8.2684 -4.6587 0.3111 31 1 9.5438 -2.5632 0.4987 32 1 8.3748 -0.3985 0.5058 33 1 5.9225 -0.3197 0.3259 34 1 3.9770 -4.5520 -0.0092 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166798619.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:43 Heat of formation + Delta-G solvation = 56.069676 kcal Electronic energy + Delta-G solvation = -19517.966155 eV Core-core repulsion = 16441.314674 eV Total energy + Delta-G solvation = -3076.651481 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.21921 -39.73425 -38.04312 -37.18828 -34.53480 -33.69167 -31.98946 -30.70695 -30.40790 -28.39801 -26.15701 -24.73035 -23.80421 -22.64800 -21.59104 -19.47990 -18.69026 -17.57775 -17.23822 -16.72180 -16.36841 -15.84910 -15.68803 -15.61734 -15.30340 -14.84636 -14.51905 -14.19794 -14.01149 -13.78050 -13.42897 -13.04797 -12.93107 -12.70731 -12.61349 -12.36592 -12.21973 -12.07936 -11.99350 -11.66473 -11.40386 -11.05514 -10.41204 -10.29480 -9.80766 -9.22985 -8.78926 -8.34845 -5.90791 -0.20614 0.44742 0.55108 0.93530 1.13099 1.41923 1.45256 1.55673 2.19061 2.72230 2.88292 3.00717 3.30027 3.60223 4.01375 4.12083 4.24891 4.28066 4.36703 4.45837 4.62750 4.65734 4.72154 4.82544 4.95155 4.99135 5.16676 5.22017 5.26579 5.28302 5.37046 5.54975 5.64281 5.72290 5.85130 6.00570 6.13611 6.48211 6.98582 7.23477 7.72561 8.62863 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.011328 B = 0.006360 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.187302 B = 4401.764459 C = 6800.593204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.146 3.854 2 N -0.441 5.441 3 C -0.331 4.331 4 H 0.102 0.898 5 C -0.010 4.010 6 N -0.899 5.899 7 Si 0.999 3.001 8 H -0.256 1.256 9 H -0.275 1.275 10 H -0.277 1.277 11 C 0.368 3.632 12 C -0.250 4.250 13 C 0.047 3.953 14 C -0.066 4.066 15 C -0.108 4.108 16 C -0.122 4.122 17 C -0.113 4.113 18 C -0.126 4.126 19 C -0.120 4.120 20 C -0.260 4.260 21 C 0.229 3.771 22 Cl -0.043 7.043 23 N -0.593 5.593 24 H 0.036 0.964 25 H 0.048 0.952 26 H 0.049 0.951 27 H 0.273 0.727 28 H 0.131 0.869 29 H 0.139 0.861 30 H 0.155 0.845 31 H 0.153 0.847 32 H 0.143 0.857 33 H 0.116 0.884 34 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.175 -8.537 -1.677 15.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.002 3.998 2 N -0.132 5.132 3 C -0.459 4.459 4 H 0.119 0.881 5 C -0.212 4.212 6 N -0.535 5.535 7 Si 0.821 3.179 8 H -0.179 1.179 9 H -0.201 1.201 10 H -0.202 1.202 11 C 0.128 3.872 12 C -0.277 4.277 13 C 0.040 3.960 14 C -0.066 4.066 15 C -0.126 4.126 16 C -0.140 4.140 17 C -0.131 4.131 18 C -0.144 4.144 19 C -0.138 4.138 20 C -0.287 4.287 21 C 0.061 3.939 22 Cl -0.014 7.014 23 N -0.317 5.317 24 H 0.054 0.946 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.149 0.851 29 H 0.157 0.843 30 H 0.172 0.828 31 H 0.171 0.829 32 H 0.161 0.839 33 H 0.134 0.866 34 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 11.842 -8.149 -1.655 14.470 hybrid contribution 0.092 0.898 0.125 0.911 sum 11.934 -7.251 -1.530 14.048 Atomic orbital electron populations 1.21099 0.79885 0.98668 1.00153 1.42651 1.05259 1.01508 1.63753 1.19933 1.01326 0.84470 1.40163 0.88088 1.26335 0.97036 1.03584 0.94292 1.70215 1.18547 1.30860 1.33843 0.84778 0.78630 0.76254 0.78217 1.17928 1.20059 1.20230 1.18331 0.89003 0.85038 0.94805 1.21352 0.92813 0.98986 1.14531 1.18877 0.92714 0.91700 0.92699 1.18794 0.90106 0.95006 1.02691 1.21495 0.95483 0.96813 0.98804 1.21463 0.93166 0.99875 0.99449 1.21632 1.01443 0.91897 0.98152 1.21377 0.93293 0.99709 1.00021 1.21460 0.95329 0.97587 0.99461 1.21225 0.91109 0.99463 1.16888 1.21160 0.88748 0.87107 0.96898 1.98330 1.75364 1.31621 1.96115 1.66126 1.41741 0.97220 1.26616 0.94578 0.93311 0.93230 0.91700 0.85150 0.84339 0.82772 0.82892 0.83895 0.86625 0.82665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 7.43 8.78 127.77 1.12 8.55 16 2 N -0.44 -23.20 3.12 -541.40 -1.69 -24.88 16 3 C -0.33 -17.19 8.89 84.04 0.75 -16.45 16 4 H 0.10 5.01 6.35 -2.91 -0.02 4.99 16 5 C -0.01 -0.50 5.14 84.87 0.44 -0.06 16 6 N -0.90 -47.91 10.66 21.65 0.23 -47.68 16 7 Si 1.00 39.51 29.57 68.60 2.03 41.54 16 8 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 9 H -0.28 -10.70 7.11 99.48 0.71 -9.99 16 10 H -0.28 -10.79 7.11 99.48 0.71 -10.09 16 11 C 0.37 18.12 7.33 133.03 0.98 19.10 16 12 C -0.25 -11.02 8.65 22.75 0.20 -10.83 16 13 C 0.05 1.79 5.91 -19.87 -0.12 1.67 16 14 C -0.07 -2.05 5.88 -20.04 -0.12 -2.16 16 15 C -0.11 -2.63 9.45 22.48 0.21 -2.42 16 16 C -0.12 -2.30 10.03 22.24 0.22 -2.08 16 17 C -0.11 -2.07 10.04 22.31 0.22 -1.84 16 18 C -0.13 -2.81 10.03 22.24 0.22 -2.59 16 19 C -0.12 -3.50 9.45 22.48 0.21 -3.29 16 20 C -0.26 -9.26 9.26 22.64 0.21 -9.05 16 21 C 0.23 9.14 7.26 84.62 0.61 9.75 16 22 Cl -0.04 -1.41 29.10 -2.72 -0.08 -1.48 16 23 N -0.59 -27.83 8.98 -184.36 -1.66 -29.49 16 24 H 0.04 1.94 7.41 -2.39 -0.02 1.92 16 25 H 0.05 2.51 7.25 -2.38 -0.02 2.49 16 26 H 0.05 2.39 7.18 -2.39 -0.02 2.38 16 27 H 0.27 13.66 8.31 -92.71 -0.77 12.89 16 28 H 0.13 5.70 4.57 -2.91 -0.01 5.69 16 29 H 0.14 2.92 6.29 -2.91 -0.02 2.90 16 30 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 31 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 32 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 33 H 0.12 3.59 6.29 -2.91 -0.02 3.57 16 34 H 0.16 4.40 6.33 -2.91 -0.02 4.39 16 Total: -1.00 -60.50 303.02 5.14 -55.36 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: 1.14 Total: 18.34 kcal Atomic # 6 Polarization: -16.86 SS G_CDS: 5.16 Total: -11.70 kcal Atomic # 7 Polarization: -98.94 SS G_CDS: -3.11 Total: -102.05 kcal Atomic # 14 Polarization: 39.51 SS G_CDS: 2.03 Total: 41.54 kcal Atomic # 17 Polarization: -1.41 SS G_CDS: -0.08 Total: -1.48 kcal Total: -60.50 5.14 -55.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166798619.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.434 kcal (2) G-P(sol) polarization free energy of solvation -60.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds