Wall clock time and date at job start Tue Mar 31 2020 05:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31574 * 1 3 3 Si 1.86804 * 120.00064 * 2 1 4 4 H 1.48494 * 109.46778 * 270.00148 * 3 2 1 5 5 H 1.48501 * 109.46847 * 29.99898 * 3 2 1 6 6 H 1.48497 * 109.46805 * 149.99918 * 3 2 1 7 7 C 1.38807 * 119.99935 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00176 * 202.92171 * 7 2 1 9 9 N 1.36905 * 120.00217 * 22.90961 * 7 2 1 10 10 C 1.46501 * 119.99614 * 33.78277 * 9 7 2 11 11 C 1.50697 * 109.47158 * 90.00129 * 10 9 7 12 12 C 1.38236 * 119.99826 * 269.72671 * 11 10 9 13 13 C 1.38230 * 120.00149 * 179.76941 * 12 11 10 14 14 C 1.38241 * 120.00185 * 0.49862 * 13 12 11 15 15 C 1.38234 * 119.99394 * 359.75685 * 14 13 12 16 16 C 1.38235 * 120.00308 * 89.99938 * 11 10 9 17 17 C 1.38872 * 120.00550 * 213.78270 * 9 7 2 18 18 C 1.39212 * 119.70333 * 171.83066 * 17 9 7 19 19 C 1.38297 * 119.10924 * 179.97438 * 18 17 9 20 20 C 1.38978 * 118.49538 * 359.97438 * 19 18 17 21 21 Cl 1.73603 * 120.34417 * 179.97438 * 20 19 18 22 22 C 1.38236 * 119.31064 * 359.97438 * 20 19 18 23 23 N 1.31892 * 120.85104 * 359.74309 * 22 20 19 24 24 H 0.97002 * 119.99862 * 359.97438 * 1 2 3 25 25 H 1.09009 * 109.46925 * 209.99631 * 10 9 7 26 26 H 1.08998 * 109.47537 * 329.99645 * 10 9 7 27 27 H 1.08005 * 119.99745 * 359.97438 * 12 11 10 28 28 H 1.07998 * 120.00550 * 180.22900 * 13 12 11 29 29 H 1.07992 * 120.00191 * 179.72664 * 14 13 12 30 30 H 1.07998 * 120.00025 * 179.97438 * 15 14 13 31 31 H 1.07997 * 120.00176 * 0.02562 * 16 11 10 32 32 H 1.08009 * 120.44316 * 359.95001 * 18 17 9 33 33 H 1.08009 * 120.75534 * 180.02562 * 19 18 17 34 34 H 1.08008 * 119.57459 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 2.4972 2.0464 -1.4000 5 1 1.4472 2.6527 0.7000 6 1 3.5473 1.4401 0.7001 7 6 2.0098 -1.2021 -0.0005 8 1 3.0259 -1.2392 0.3637 9 7 1.4063 -2.3408 -0.4626 10 6 0.4440 -2.2642 -1.5646 11 6 1.1693 -2.4183 -2.8765 12 6 1.6525 -1.3026 -3.5343 13 6 2.3220 -1.4443 -4.7353 14 6 2.4994 -2.7008 -5.2838 15 6 2.0117 -3.8160 -4.6285 16 6 1.3466 -3.6748 -3.4249 17 6 1.7062 -3.5684 0.1133 18 6 0.9690 -4.6950 -0.2408 19 6 1.2785 -5.9114 0.3398 20 6 2.3198 -5.9615 1.2589 21 17 2.7486 -7.4631 2.0172 22 6 3.0105 -4.8033 1.5629 23 7 2.6964 -3.6581 0.9890 24 1 -0.4850 0.8401 0.0004 25 1 -0.2919 -3.0617 -1.4604 26 1 -0.0609 -1.2985 -1.5398 27 1 1.5097 -0.3205 -3.1082 28 1 2.7028 -0.5730 -5.2474 29 1 3.0187 -2.8111 -6.2242 30 1 2.1498 -4.7976 -5.0571 31 1 0.9650 -4.5460 -2.9134 32 1 0.1658 -4.6199 -0.9591 33 1 0.7241 -6.8024 0.0842 34 1 3.8202 -4.8374 2.2769 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166993918.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:38 Heat of formation + Delta-G solvation = 59.575461 kcal Electronic energy + Delta-G solvation = -20016.499632 eV Core-core repulsion = 16940.000173 eV Total energy + Delta-G solvation = -3076.499459 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.09682 -39.95195 -37.84164 -36.97904 -34.08547 -33.22460 -32.39832 -31.70857 -30.20789 -27.84728 -25.91656 -24.28071 -23.32343 -22.98266 -21.83153 -19.41687 -18.49094 -17.49949 -17.14598 -16.97571 -16.45109 -16.06193 -15.89946 -15.47131 -15.16257 -14.97025 -14.25031 -14.18020 -13.87407 -13.62441 -13.30881 -13.09426 -13.07741 -13.00504 -12.59563 -12.43292 -12.18145 -11.94170 -11.88052 -11.74174 -11.11955 -10.56536 -10.26640 -10.00959 -9.75527 -9.61921 -8.66629 -8.20604 -5.85763 0.42185 0.54124 0.57587 0.65402 1.40279 1.40594 1.47690 1.51199 2.24807 2.72522 2.85019 3.16526 3.25524 3.84782 4.03905 4.09144 4.11405 4.21932 4.32151 4.33568 4.47518 4.50491 4.70667 4.81227 4.96925 5.11969 5.19190 5.21446 5.27497 5.31442 5.47795 5.62984 5.64657 5.73168 5.88255 6.15609 6.21338 6.58077 7.13104 7.48527 7.82247 8.66344 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.013000 B = 0.006454 C = 0.004741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.305173 B = 4337.655240 C = 5903.899880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.001 3.999 3 Si 0.969 3.031 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.272 1.272 7 C -0.307 4.307 8 H 0.076 0.924 9 N -0.426 5.426 10 C 0.147 3.853 11 C -0.103 4.103 12 C -0.116 4.116 13 C -0.130 4.130 14 C -0.124 4.124 15 C -0.126 4.126 16 C -0.122 4.122 17 C 0.361 3.639 18 C -0.263 4.263 19 C -0.015 4.015 20 C -0.199 4.199 21 Cl -0.076 7.076 22 C 0.162 3.838 23 N -0.568 5.568 24 H 0.272 0.728 25 H 0.070 0.930 26 H 0.103 0.897 27 H 0.100 0.900 28 H 0.138 0.862 29 H 0.151 0.849 30 H 0.147 0.853 31 H 0.125 0.875 32 H 0.138 0.862 33 H 0.158 0.842 34 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.779 -7.832 -7.271 10.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.202 4.202 3 Si 0.794 3.206 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.197 1.197 7 C -0.436 4.436 8 H 0.094 0.906 9 N -0.116 5.116 10 C 0.024 3.976 11 C -0.105 4.105 12 C -0.135 4.135 13 C -0.148 4.148 14 C -0.142 4.142 15 C -0.143 4.143 16 C -0.140 4.140 17 C 0.123 3.877 18 C -0.290 4.290 19 C -0.041 4.041 20 C -0.233 4.233 21 Cl -0.048 7.048 22 C -0.001 4.001 23 N -0.288 5.288 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.120 0.880 27 H 0.118 0.882 28 H 0.156 0.844 29 H 0.168 0.832 30 H 0.165 0.835 31 H 0.143 0.857 32 H 0.156 0.844 33 H 0.176 0.824 34 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 1.994 -6.742 -7.145 10.024 hybrid contribution -0.178 0.232 0.339 0.448 sum 1.815 -6.510 -6.806 9.592 Atomic orbital electron populations 1.70026 1.06966 1.28481 1.47111 1.25919 0.95769 1.01997 0.96475 0.85277 0.78493 0.77983 0.78873 1.19135 1.20532 1.19686 1.19456 0.97325 0.85600 1.41244 0.90607 1.42511 1.39171 1.02393 1.27564 1.20607 0.90176 1.04879 0.81917 1.20459 0.99867 0.94190 0.95955 1.21104 0.98554 0.98021 0.95828 1.21382 0.99069 0.98917 0.95432 1.21447 0.99902 0.91970 1.00853 1.21433 0.97981 1.00002 0.94918 1.21296 0.99843 0.96243 0.96633 1.19073 0.90905 0.88085 0.89659 1.21358 1.05332 0.92362 1.09917 1.21234 0.93460 0.97603 0.91767 1.21341 1.06169 0.88238 1.07544 1.98275 1.93049 1.32071 1.81394 1.22569 0.96663 0.85698 0.95159 1.67353 1.19063 1.27641 1.14694 0.91816 0.91176 0.87967 0.88227 0.84442 0.83166 0.83524 0.85699 0.84401 0.82444 0.81990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.55 11.29 21.65 0.24 -46.31 16 2 C 0.00 0.03 4.95 84.87 0.42 0.45 16 3 Si 0.97 41.29 29.61 68.60 2.03 43.32 16 4 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 5 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 6 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.31 -16.46 9.04 84.04 0.76 -15.70 16 8 H 0.08 4.32 7.59 -2.91 -0.02 4.30 16 9 N -0.43 -21.00 2.63 -521.94 -1.37 -22.37 16 10 C 0.15 6.47 5.03 85.63 0.43 6.90 16 11 C -0.10 -4.01 5.46 -19.87 -0.11 -4.11 16 12 C -0.12 -4.38 9.70 22.27 0.22 -4.16 16 13 C -0.13 -3.93 10.05 22.27 0.22 -3.70 16 14 C -0.12 -3.21 10.05 22.27 0.22 -2.99 16 15 C -0.13 -3.42 10.05 22.27 0.22 -3.19 16 16 C -0.12 -4.00 9.63 22.27 0.21 -3.79 16 17 C 0.36 16.78 7.30 133.10 0.97 17.75 16 18 C -0.26 -10.05 8.61 22.52 0.19 -9.85 16 19 C -0.02 -0.50 9.97 22.46 0.22 -0.27 16 20 C -0.20 -6.74 6.35 22.45 0.14 -6.60 16 21 Cl -0.08 -2.12 28.99 -2.72 -0.08 -2.20 16 22 C 0.16 6.24 10.97 84.68 0.93 7.17 16 23 N -0.57 -26.63 9.34 -193.12 -1.80 -28.43 16 24 H 0.27 13.45 8.31 -92.71 -0.77 12.68 16 25 H 0.07 2.83 5.83 -2.38 -0.01 2.82 16 26 H 0.10 4.98 5.24 -2.39 -0.01 4.97 16 27 H 0.10 4.07 8.06 -2.91 -0.02 4.05 16 28 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 29 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 30 H 0.15 3.01 8.06 -2.91 -0.02 2.98 16 31 H 0.13 3.81 6.52 -2.91 -0.02 3.79 16 32 H 0.14 4.78 5.14 -2.91 -0.01 4.77 16 33 H 0.16 4.03 8.06 -2.91 -0.02 4.00 16 34 H 0.16 5.37 8.06 -2.91 -0.02 5.35 16 Total: -1.00 -59.49 307.31 5.21 -54.28 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: 1.13 Total: 23.81 kcal Atomic # 6 Polarization: -27.17 SS G_CDS: 5.07 Total: -22.10 kcal Atomic # 7 Polarization: -94.18 SS G_CDS: -2.93 Total: -97.11 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.32 kcal Atomic # 17 Polarization: -2.12 SS G_CDS: -0.08 Total: -2.20 kcal Total: -59.49 5.21 -54.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166993918.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.853 kcal (2) G-P(sol) polarization free energy of solvation -59.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds