Wall clock time and date at job start Tue Mar 31 2020 05:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31567 * 1 3 3 Si 1.86803 * 119.99678 * 2 1 4 4 H 1.48503 * 109.46914 * 180.34585 * 3 2 1 5 5 H 1.48495 * 109.47327 * 300.34587 * 3 2 1 6 6 H 1.48496 * 109.47083 * 60.34538 * 3 2 1 7 7 C 1.38812 * 120.00010 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99960 * 27.64960 * 7 2 1 9 9 N 1.36914 * 119.99697 * 207.37774 * 7 2 1 10 10 C 1.46495 * 120.00076 * 29.00673 * 9 7 2 11 11 C 1.50693 * 109.47461 * 93.45165 * 10 9 7 12 12 C 1.38236 * 119.99980 * 275.28392 * 11 10 9 13 13 C 1.38244 * 119.99881 * 179.76049 * 12 11 10 14 14 C 1.38233 * 119.99728 * 0.50979 * 13 12 11 15 15 C 1.38230 * 120.00330 * 359.74094 * 14 13 12 16 16 C 1.38233 * 120.00326 * 95.55204 * 11 10 9 17 17 C 1.38831 * 119.99766 * 209.00802 * 9 7 2 18 18 C 1.39194 * 119.70695 * 4.99970 * 17 9 7 19 19 C 1.38349 * 119.12177 * 179.97438 * 18 17 9 20 20 C 1.38818 * 118.52514 * 359.97438 * 19 18 17 21 21 C 1.38301 * 119.32319 * 0.02562 * 20 19 18 22 22 Cl 1.73605 * 119.58278 * 179.97438 * 21 20 19 23 23 N 1.31986 * 120.83440 * 359.74314 * 21 20 19 24 24 H 0.97003 * 120.00110 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47230 * 213.45038 * 10 9 7 26 26 H 1.09000 * 109.47391 * 333.44920 * 10 9 7 27 27 H 1.08004 * 120.00102 * 359.97438 * 12 11 10 28 28 H 1.08000 * 119.99483 * 180.23082 * 13 12 11 29 29 H 1.08005 * 119.99388 * 179.72589 * 14 13 12 30 30 H 1.07998 * 120.00117 * 179.97438 * 15 14 13 31 31 H 1.08003 * 119.99881 * 0.02562 * 16 11 10 32 32 H 1.08005 * 120.43538 * 359.95622 * 18 17 9 33 33 H 1.07994 * 120.73640 * 180.02562 * 19 18 17 34 34 H 1.07996 * 120.33806 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.7096 1.3465 -0.0085 5 1 1.8845 2.4002 -1.2082 6 1 1.8971 2.3928 1.2167 7 6 2.0097 -1.2021 -0.0005 8 1 1.5622 -2.0838 -0.4350 9 7 3.2639 -1.2687 0.5447 10 6 3.6359 -0.3677 1.6382 11 6 3.3809 -1.0479 2.9585 12 6 2.1203 -1.0083 3.5243 13 6 1.8852 -1.6365 4.7331 14 6 2.9132 -2.2952 5.3811 15 6 4.1751 -2.3304 4.8179 16 6 4.4089 -1.7067 3.6066 17 6 4.1829 -2.1901 0.0612 18 6 3.8602 -2.9709 -1.0450 19 6 4.7853 -3.8849 -1.5170 20 6 6.0068 -3.9883 -0.8657 21 6 6.2616 -3.1812 0.2281 22 17 7.7868 -3.3053 1.0481 23 7 5.3617 -2.3145 0.6537 24 1 -0.4850 0.8401 0.0004 25 1 4.6933 -0.1158 1.5576 26 1 3.0399 0.5429 1.5775 27 1 1.3182 -0.4895 3.0203 28 1 0.8993 -1.6087 5.1733 29 1 2.7305 -2.7822 6.3277 30 1 4.9784 -2.8447 5.3244 31 1 5.3950 -1.7336 3.1669 32 1 2.9001 -2.8648 -1.5283 33 1 4.5624 -4.5037 -2.3736 34 1 6.7503 -4.6923 -1.2091 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166993921.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:40 Heat of formation + Delta-G solvation = 79.328880 kcal Electronic energy + Delta-G solvation = -20270.302992 eV Core-core repulsion = 17194.660106 eV Total energy + Delta-G solvation = -3075.642886 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.62761 -38.58719 -36.52655 -35.74677 -32.59702 -31.53921 -31.38698 -30.34139 -28.90101 -26.16745 -24.65325 -22.49583 -21.98895 -21.44550 -20.66312 -17.68541 -17.04447 -16.13216 -15.95956 -15.45854 -14.76908 -14.75585 -14.39667 -14.00930 -13.95101 -13.08329 -12.99446 -12.86179 -12.72073 -12.50050 -11.98250 -11.71932 -11.53158 -11.26360 -11.00915 -10.87191 -10.80564 -10.48425 -10.33541 -10.01590 -9.57145 -9.13538 -8.80654 -8.67578 -8.37679 -8.21765 -7.09928 -6.73745 -4.04927 1.80653 1.92634 1.95654 2.15677 2.40253 2.95605 3.10882 3.15485 3.90057 4.05091 4.41890 4.51765 4.83582 5.35407 5.36065 5.38193 5.48119 5.69397 5.77494 5.84849 5.90192 6.02132 6.07372 6.15399 6.26641 6.30554 6.50375 6.60722 6.70235 6.97489 6.99457 7.00076 7.18312 7.27327 7.33775 7.53647 7.84070 8.21112 8.53360 8.94738 9.32452 10.34673 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.012358 B = 0.008176 C = 0.005754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2265.268122 B = 3423.864110 C = 4864.791415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.066 3.934 3 Si 0.865 3.135 4 H -0.257 1.257 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.319 4.319 8 H 0.111 0.889 9 N -0.427 5.427 10 C 0.159 3.841 11 C -0.090 4.090 12 C -0.090 4.090 13 C -0.131 4.131 14 C -0.127 4.127 15 C -0.135 4.135 16 C -0.092 4.092 17 C 0.392 3.608 18 C -0.233 4.233 19 C -0.029 4.029 20 C -0.273 4.273 21 C 0.237 3.763 22 Cl -0.070 7.070 23 N -0.564 5.564 24 H 0.279 0.721 25 H 0.081 0.919 26 H 0.065 0.935 27 H 0.125 0.875 28 H 0.115 0.885 29 H 0.112 0.888 30 H 0.114 0.886 31 H 0.129 0.871 32 H 0.137 0.863 33 H 0.125 0.875 34 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.041 -3.185 3.802 8.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.144 4.144 3 Si 0.692 3.308 4 H -0.182 1.182 5 H -0.209 1.209 6 H -0.200 1.200 7 C -0.446 4.446 8 H 0.128 0.872 9 N -0.118 5.118 10 C 0.036 3.964 11 C -0.092 4.092 12 C -0.109 4.109 13 C -0.149 4.149 14 C -0.145 4.145 15 C -0.153 4.153 16 C -0.110 4.110 17 C 0.153 3.847 18 C -0.260 4.260 19 C -0.054 4.054 20 C -0.300 4.300 21 C 0.068 3.932 22 Cl -0.042 7.042 23 N -0.287 5.287 24 H 0.089 0.911 25 H 0.100 0.900 26 H 0.083 0.917 27 H 0.143 0.857 28 H 0.133 0.867 29 H 0.130 0.870 30 H 0.132 0.868 31 H 0.146 0.854 32 H 0.155 0.845 33 H 0.143 0.857 34 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.864 -2.317 4.664 8.616 hybrid contribution 0.152 0.313 -0.609 0.702 sum 7.016 -2.004 4.054 8.347 Atomic orbital electron populations 1.69881 1.06223 1.28614 1.42462 1.25241 0.95081 0.98476 0.95567 0.87084 0.81848 0.83587 0.78321 1.18157 1.20892 1.19951 1.19027 0.87799 0.97832 1.39908 0.87189 1.42534 1.09960 1.31378 1.27911 1.20568 1.00389 0.91542 0.83898 1.20281 0.93763 0.99296 0.95837 1.21192 0.96643 0.98415 0.94637 1.21055 0.98671 0.99162 0.96021 1.21027 0.93523 1.00220 0.99757 1.21046 0.96836 1.00896 0.96501 1.21211 0.99585 0.96024 0.94199 1.18089 0.85332 0.92113 0.89140 1.21367 1.02645 1.01745 1.00221 1.21030 0.91972 0.95230 0.97183 1.20943 1.00310 1.07491 1.01245 1.20909 0.87425 0.93530 0.91318 1.98335 1.28855 1.96996 1.80054 1.66146 1.02790 1.24811 1.34926 0.91080 0.90040 0.91750 0.85709 0.86674 0.86961 0.86825 0.85354 0.84528 0.85692 0.86121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.68 13.96 55.49 0.77 -20.90 16 2 C 0.07 1.62 5.26 -17.45 -0.09 1.53 16 3 Si 0.87 19.20 25.15 -169.99 -4.28 14.93 16 4 H -0.26 -5.71 6.19 56.52 0.35 -5.36 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 7 C -0.32 -7.89 9.08 -15.07 -0.14 -8.03 16 8 H 0.11 2.88 6.75 -52.49 -0.35 2.53 16 9 N -0.43 -9.85 2.40 -116.34 -0.28 -10.13 16 10 C 0.16 3.43 3.72 -5.20 -0.02 3.41 16 11 C -0.09 -1.83 5.45 -104.63 -0.57 -2.40 16 12 C -0.09 -1.78 9.72 -39.58 -0.38 -2.16 16 13 C -0.13 -2.23 10.05 -39.58 -0.40 -2.62 16 14 C -0.13 -1.99 10.05 -39.59 -0.40 -2.39 16 15 C -0.13 -2.20 10.05 -39.58 -0.40 -2.60 16 16 C -0.09 -1.70 9.36 -39.58 -0.37 -2.07 16 17 C 0.39 8.64 7.32 -155.07 -1.14 7.51 16 18 C -0.23 -4.71 9.26 -39.19 -0.36 -5.07 16 19 C -0.03 -0.49 10.16 -39.33 -0.40 -0.89 16 20 C -0.27 -4.64 9.87 -39.34 -0.39 -5.03 16 21 C 0.24 4.41 7.27 -17.46 -0.13 4.29 16 22 Cl -0.07 -1.12 29.10 -51.86 -1.51 -2.63 16 23 N -0.56 -11.76 8.21 -9.54 -0.08 -11.84 16 24 H 0.28 6.70 8.31 -40.82 -0.34 6.36 16 25 H 0.08 1.72 7.47 -51.93 -0.39 1.33 16 26 H 0.06 1.41 3.01 -51.93 -0.16 1.25 16 27 H 0.12 2.61 8.06 -52.48 -0.42 2.19 16 28 H 0.12 1.69 8.06 -52.49 -0.42 1.26 16 29 H 0.11 1.43 8.06 -52.48 -0.42 1.00 16 30 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 31 H 0.13 2.39 7.39 -52.48 -0.39 2.00 16 32 H 0.14 2.78 6.38 -52.48 -0.33 2.44 16 33 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 34 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 303.51 15.07 4.57 4.57 Total: -1.00 -25.84 303.51 -9.32 -35.16 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -3.35 Total: 7.36 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: -5.18 Total: -16.53 kcal Atomic # 7 Polarization: -43.28 SS G_CDS: 0.42 Total: -42.86 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -4.28 Total: 14.93 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -1.51 Total: -2.63 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -25.84 -9.32 -35.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166993921.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.487 kcal (2) G-P(sol) polarization free energy of solvation -25.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds