Wall clock time and date at job start Tue Mar 31 2020 05:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31567 * 1 3 3 Si 1.86803 * 119.99678 * 2 1 4 4 H 1.48503 * 109.46914 * 180.34585 * 3 2 1 5 5 H 1.48495 * 109.47327 * 300.34587 * 3 2 1 6 6 H 1.48496 * 109.47083 * 60.34538 * 3 2 1 7 7 C 1.38812 * 120.00010 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99960 * 27.64960 * 7 2 1 9 9 N 1.36914 * 119.99697 * 207.37774 * 7 2 1 10 10 C 1.46495 * 120.00076 * 29.00673 * 9 7 2 11 11 C 1.50693 * 109.47461 * 93.45165 * 10 9 7 12 12 C 1.38236 * 119.99980 * 275.28392 * 11 10 9 13 13 C 1.38244 * 119.99881 * 179.76049 * 12 11 10 14 14 C 1.38233 * 119.99728 * 0.50979 * 13 12 11 15 15 C 1.38230 * 120.00330 * 359.74094 * 14 13 12 16 16 C 1.38233 * 120.00326 * 95.55204 * 11 10 9 17 17 C 1.38831 * 119.99766 * 209.00802 * 9 7 2 18 18 C 1.39194 * 119.70695 * 4.99970 * 17 9 7 19 19 C 1.38349 * 119.12177 * 179.97438 * 18 17 9 20 20 C 1.38818 * 118.52514 * 359.97438 * 19 18 17 21 21 C 1.38301 * 119.32319 * 0.02562 * 20 19 18 22 22 Cl 1.73605 * 119.58278 * 179.97438 * 21 20 19 23 23 N 1.31986 * 120.83440 * 359.74314 * 21 20 19 24 24 H 0.97003 * 120.00110 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47230 * 213.45038 * 10 9 7 26 26 H 1.09000 * 109.47391 * 333.44920 * 10 9 7 27 27 H 1.08004 * 120.00102 * 359.97438 * 12 11 10 28 28 H 1.08000 * 119.99483 * 180.23082 * 13 12 11 29 29 H 1.08005 * 119.99388 * 179.72589 * 14 13 12 30 30 H 1.07998 * 120.00117 * 179.97438 * 15 14 13 31 31 H 1.08003 * 119.99881 * 0.02562 * 16 11 10 32 32 H 1.08005 * 120.43538 * 359.95622 * 18 17 9 33 33 H 1.07994 * 120.73640 * 180.02562 * 19 18 17 34 34 H 1.07996 * 120.33806 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.7096 1.3465 -0.0085 5 1 1.8845 2.4002 -1.2082 6 1 1.8971 2.3928 1.2167 7 6 2.0097 -1.2021 -0.0005 8 1 1.5622 -2.0838 -0.4350 9 7 3.2639 -1.2687 0.5447 10 6 3.6359 -0.3677 1.6382 11 6 3.3809 -1.0479 2.9585 12 6 2.1203 -1.0083 3.5243 13 6 1.8852 -1.6365 4.7331 14 6 2.9132 -2.2952 5.3811 15 6 4.1751 -2.3304 4.8179 16 6 4.4089 -1.7067 3.6066 17 6 4.1829 -2.1901 0.0612 18 6 3.8602 -2.9709 -1.0450 19 6 4.7853 -3.8849 -1.5170 20 6 6.0068 -3.9883 -0.8657 21 6 6.2616 -3.1812 0.2281 22 17 7.7868 -3.3053 1.0481 23 7 5.3617 -2.3145 0.6537 24 1 -0.4850 0.8401 0.0004 25 1 4.6933 -0.1158 1.5576 26 1 3.0399 0.5429 1.5775 27 1 1.3182 -0.4895 3.0203 28 1 0.8993 -1.6087 5.1733 29 1 2.7305 -2.7822 6.3277 30 1 4.9784 -2.8447 5.3244 31 1 5.3950 -1.7336 3.1669 32 1 2.9001 -2.8648 -1.5283 33 1 4.5624 -4.5037 -2.3736 34 1 6.7503 -4.6923 -1.2091 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166993921.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:39 Heat of formation + Delta-G solvation = 68.137938 kcal Electronic energy + Delta-G solvation = -20270.788267 eV Core-core repulsion = 17194.660106 eV Total energy + Delta-G solvation = -3076.128162 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.18886 -40.00299 -38.04500 -37.19908 -34.37824 -33.10651 -32.84059 -31.71136 -30.44829 -27.79508 -26.31899 -24.00839 -23.36861 -22.98580 -22.15997 -19.40166 -18.62386 -17.66374 -17.52269 -17.02149 -16.26636 -16.20557 -15.89681 -15.57319 -15.46513 -14.74625 -14.60170 -14.35147 -14.24120 -13.90277 -13.45689 -13.33158 -13.06378 -12.76617 -12.65652 -12.38104 -12.14221 -12.03235 -11.88122 -11.65623 -11.22038 -10.75639 -10.37286 -10.29447 -9.75572 -9.62356 -8.74789 -8.60390 -5.93188 0.37820 0.45537 0.56642 0.65913 0.97176 1.17070 1.30345 1.34952 2.09789 2.45506 2.75368 3.03891 3.15726 3.87066 3.93200 3.98687 4.19218 4.26848 4.33109 4.40162 4.42753 4.54056 4.58136 4.74646 4.79505 4.82119 5.12788 5.19415 5.22707 5.47336 5.55371 5.62473 5.63824 5.72565 5.85186 5.98274 6.17968 6.47394 6.85782 7.15841 7.60848 8.52479 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.012358 B = 0.008176 C = 0.005754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2265.268122 B = 3423.864110 C = 4864.791415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.033 3.967 3 Si 0.914 3.086 4 H -0.261 1.261 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.315 4.315 8 H 0.082 0.918 9 N -0.450 5.450 10 C 0.164 3.836 11 C -0.109 4.109 12 C -0.115 4.115 13 C -0.132 4.132 14 C -0.118 4.118 15 C -0.130 4.130 16 C -0.102 4.102 17 C 0.379 3.621 18 C -0.256 4.256 19 C -0.015 4.015 20 C -0.252 4.252 21 C 0.216 3.784 22 Cl -0.044 7.044 23 N -0.574 5.574 24 H 0.281 0.719 25 H 0.078 0.922 26 H 0.053 0.947 27 H 0.099 0.901 28 H 0.137 0.863 29 H 0.153 0.847 30 H 0.145 0.855 31 H 0.124 0.876 32 H 0.125 0.875 33 H 0.167 0.833 34 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.456 -5.047 4.746 11.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.172 4.172 3 Si 0.740 3.260 4 H -0.185 1.185 5 H -0.211 1.211 6 H -0.193 1.193 7 C -0.443 4.443 8 H 0.100 0.900 9 N -0.145 5.145 10 C 0.041 3.959 11 C -0.111 4.111 12 C -0.134 4.134 13 C -0.150 4.150 14 C -0.136 4.136 15 C -0.148 4.148 16 C -0.120 4.120 17 C 0.142 3.858 18 C -0.283 4.283 19 C -0.040 4.040 20 C -0.278 4.278 21 C 0.049 3.951 22 Cl -0.015 7.015 23 N -0.296 5.296 24 H 0.091 0.909 25 H 0.096 0.904 26 H 0.071 0.929 27 H 0.117 0.883 28 H 0.155 0.845 29 H 0.170 0.830 30 H 0.163 0.837 31 H 0.142 0.858 32 H 0.143 0.857 33 H 0.184 0.816 34 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 9.337 -4.208 5.601 11.673 hybrid contribution -0.327 0.618 -0.909 1.147 sum 9.010 -3.589 4.693 10.774 Atomic orbital electron populations 1.69933 1.07243 1.29183 1.45439 1.25624 0.95411 1.00454 0.95754 0.86310 0.80569 0.80929 0.78180 1.18503 1.21111 1.19319 1.18744 0.88821 0.96885 1.39862 0.90046 1.42439 1.09802 1.32910 1.29301 1.20468 0.99617 0.91210 0.84599 1.20259 0.94596 1.00570 0.95664 1.21129 0.95987 1.00053 0.96220 1.21345 1.00371 0.98347 0.94930 1.21451 0.92520 0.98868 1.00730 1.21426 0.98152 0.99773 0.95449 1.21230 0.98856 0.96669 0.95293 1.18405 0.85895 0.91687 0.89793 1.21512 1.03266 1.03058 1.00434 1.21496 0.90939 0.93949 0.97639 1.21455 1.00587 1.06302 0.99455 1.21410 0.88079 0.93453 0.92154 1.98343 1.26714 1.96829 1.79661 1.66176 1.02730 1.25594 1.35143 0.90914 0.90382 0.92944 0.88317 0.84505 0.82980 0.83689 0.85819 0.85685 0.81589 0.82458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -48.18 13.96 21.65 0.30 -47.87 16 2 C 0.03 1.71 5.26 84.87 0.45 2.16 16 3 Si 0.91 41.54 25.15 68.60 1.73 43.26 16 4 H -0.26 -11.80 6.19 99.48 0.62 -11.18 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.32 -16.53 9.08 84.04 0.76 -15.76 16 8 H 0.08 4.59 6.75 -2.91 -0.02 4.57 16 9 N -0.45 -21.55 2.40 -522.00 -1.25 -22.81 16 10 C 0.16 7.33 3.72 85.63 0.32 7.65 16 11 C -0.11 -4.52 5.45 -19.87 -0.11 -4.63 16 12 C -0.12 -4.67 9.72 22.27 0.22 -4.45 16 13 C -0.13 -4.34 10.05 22.27 0.22 -4.11 16 14 C -0.12 -3.32 10.05 22.27 0.22 -3.10 16 15 C -0.13 -3.90 10.05 22.27 0.22 -3.68 16 16 C -0.10 -3.70 9.36 22.27 0.21 -3.50 16 17 C 0.38 16.89 7.32 133.10 0.97 17.86 16 18 C -0.26 -10.30 9.26 22.53 0.21 -10.09 16 19 C -0.02 -0.47 10.16 22.44 0.23 -0.24 16 20 C -0.25 -7.60 9.87 22.42 0.22 -7.37 16 21 C 0.22 7.52 7.27 84.68 0.62 8.14 16 22 Cl -0.04 -1.26 29.10 -2.72 -0.08 -1.34 16 23 N -0.57 -23.46 8.21 -184.10 -1.51 -24.97 16 24 H 0.28 14.27 8.31 -92.71 -0.77 13.49 16 25 H 0.08 3.40 7.47 -2.39 -0.02 3.39 16 26 H 0.05 2.41 3.01 -2.39 -0.01 2.40 16 27 H 0.10 4.44 8.06 -2.91 -0.02 4.42 16 28 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 29 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 30 H 0.15 3.40 8.06 -2.91 -0.02 3.37 16 31 H 0.12 4.53 7.39 -2.91 -0.02 4.51 16 32 H 0.13 5.28 6.38 -2.91 -0.02 5.26 16 33 H 0.17 3.80 8.06 -2.91 -0.02 3.78 16 34 H 0.16 3.64 8.06 -2.91 -0.02 3.62 16 Total: -1.00 -58.42 303.51 4.98 -53.44 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: 1.03 Total: 21.42 kcal Atomic # 6 Polarization: -25.90 SS G_CDS: 4.76 Total: -21.13 kcal Atomic # 7 Polarization: -93.19 SS G_CDS: -2.46 Total: -95.65 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 1.73 Total: 43.26 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -0.08 Total: -1.34 kcal Total: -58.42 4.98 -53.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166993921.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.579 kcal (2) G-P(sol) polarization free energy of solvation -58.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds