Wall clock time and date at job start Tue Mar 31 2020 06:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35798 * 116.99663 * 2 1 4 4 C 1.38930 * 120.81290 * 4.80575 * 3 2 1 5 5 C 1.38855 * 119.05301 * 180.28630 * 4 3 2 6 6 N 1.39288 * 119.64882 * 179.73032 * 5 4 3 7 7 C 1.38369 * 120.00121 * 62.66388 * 6 5 4 8 8 C 1.38976 * 119.99806 * 186.72861 * 7 6 5 9 9 H 1.08001 * 119.99436 * 145.24099 * 8 7 6 10 10 C 1.40841 * 120.00289 * 325.51402 * 8 7 6 11 11 N 1.30333 * 120.00027 * 2.86468 * 10 8 7 12 12 Si 1.86802 * 120.00263 * 182.86541 * 10 8 7 13 13 H 1.48496 * 109.46893 * 89.99754 * 12 10 8 14 14 H 1.48496 * 109.46958 * 210.00121 * 12 10 8 15 15 H 1.48497 * 109.47027 * 330.00130 * 12 10 8 16 16 C 1.41139 * 119.99812 * 6.72875 * 7 6 5 17 17 C 1.43201 * 120.00367 * 7.51427 * 16 7 6 18 18 N 3.50639 * 104.88926 * 47.04081 * 2 1 3 19 19 C 1.43203 * 119.99820 * 187.51716 * 16 7 6 20 20 N 6.77152 * 68.87226 * 44.41810 * 2 1 3 21 21 N 1.32464 * 120.69933 * 359.45003 * 5 4 3 22 22 C 1.32052 * 121.77511 * 0.27801 * 21 5 4 23 23 C 1.38027 * 120.87947 * 0.02562 * 22 21 5 24 24 F 1.35104 * 120.39595 * 180.02562 * 23 22 21 25 25 H 1.09005 * 109.46736 * 184.49032 * 1 2 3 26 26 H 1.09004 * 109.47070 * 304.48836 * 1 2 3 27 27 H 1.09002 * 109.47142 * 64.49004 * 1 2 3 28 28 H 1.07999 * 120.47315 * 0.02737 * 4 3 2 29 29 H 0.97001 * 119.99671 * 242.66001 * 6 5 4 30 30 H 0.97000 * 120.00618 * 185.00460 * 11 10 8 31 31 H 1.07995 * 119.56479 * 179.97438 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2100 0.0000 4 6 1.3091 2.3838 0.1000 5 6 1.9765 3.6014 0.0903 6 7 1.2500 4.7862 0.1842 7 6 0.5011 5.0506 1.3172 8 6 -0.3326 6.1618 1.3553 9 1 -1.2706 6.1150 1.8886 10 6 0.0430 7.3471 0.6937 11 7 1.1453 7.3845 -0.0007 12 14 -1.0387 8.8655 0.8113 13 1 -0.6223 9.6804 1.9808 14 1 -0.8981 9.6707 -0.4284 15 1 -2.4556 8.4524 0.9752 16 6 0.5839 4.1917 2.4342 17 6 1.5575 3.1420 2.4597 18 7 2.3300 2.3093 2.4800 19 6 -0.3059 4.3701 3.5419 20 7 -1.0117 4.5115 4.4207 21 7 3.2971 3.6480 -0.0016 22 6 4.0270 2.5513 -0.0925 23 6 3.4348 1.3045 -0.0956 24 9 4.1910 0.1888 -0.1885 25 1 -0.3633 -1.0246 0.0805 26 1 -0.3633 0.5819 0.8471 27 1 -0.3633 0.4426 -0.9275 28 1 0.2326 2.3499 0.1798 29 1 1.2692 5.4258 -0.5447 30 1 1.4414 8.2193 -0.3961 31 1 5.1015 2.6309 -0.1662 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169079019.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:49 Heat of formation + Delta-G solvation = 29.948977 kcal Electronic energy + Delta-G solvation = -22236.093745 eV Core-core repulsion = 18626.432867 eV Total energy + Delta-G solvation = -3609.660878 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.076 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.48483 -40.54337 -38.49352 -36.99055 -35.21671 -34.76801 -33.56922 -31.08620 -30.88155 -28.65190 -27.40588 -26.99759 -23.12592 -22.79594 -21.19176 -19.38745 -18.35549 -17.52573 -17.26302 -17.08393 -16.17757 -16.04805 -15.33631 -14.93343 -14.82492 -14.33980 -14.11992 -13.70873 -13.40967 -13.19258 -13.02947 -12.56097 -12.19824 -12.08622 -11.91098 -11.68335 -11.61327 -11.53638 -11.41605 -11.35862 -10.97635 -10.87897 -10.56321 -10.41907 -9.75403 -9.27117 -8.51428 -8.25780 -7.58461 -6.94009 -5.46118 1.21413 1.53893 2.37326 2.76822 2.82865 2.96769 3.18313 3.47331 3.65620 3.79942 4.02052 4.07960 4.24630 4.33663 4.47291 4.85220 5.04466 5.12118 5.19343 5.24130 5.44351 5.51647 5.59096 5.69121 5.90604 6.05017 6.27171 6.41173 6.65456 7.00558 7.24149 7.33746 7.48436 7.91574 8.13807 8.43670 8.63355 8.93098 9.11892 9.38520 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.019831 B = 0.005839 C = 0.005200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.556892 B = 4793.785797 C = 5382.869113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.305 6.305 3 C 0.158 3.842 4 C -0.226 4.226 5 C 0.387 3.613 6 N -0.645 5.645 7 C 0.441 3.559 8 C -0.442 4.442 9 H 0.114 0.886 10 C 0.081 3.919 11 N -0.783 5.783 12 Si 0.936 3.064 13 H -0.260 1.260 14 H -0.270 1.270 15 H -0.252 1.252 16 C -0.328 4.328 17 C 0.301 3.699 18 N -0.525 5.525 19 C 0.332 3.668 20 N -0.533 5.533 21 N -0.489 5.489 22 C 0.126 3.874 23 C 0.015 3.985 24 F -0.133 7.133 25 H 0.101 0.899 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.150 0.850 29 H 0.429 0.571 30 H 0.304 0.696 31 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.843 -2.812 -8.142 8.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.216 6.216 3 C 0.104 3.896 4 C -0.250 4.250 5 C 0.157 3.843 6 N -0.276 5.276 7 C 0.326 3.674 8 C -0.474 4.474 9 H 0.132 0.868 10 C -0.143 4.143 11 N -0.408 5.408 12 Si 0.758 3.242 13 H -0.184 1.184 14 H -0.195 1.195 15 H -0.175 1.175 16 C -0.347 4.347 17 C -0.005 4.005 18 N -0.207 5.207 19 C 0.023 3.977 20 N -0.215 5.215 21 N -0.204 5.204 22 C -0.034 4.034 23 C -0.008 4.008 24 F -0.112 7.112 25 H 0.119 0.881 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.168 0.832 29 H 0.276 0.724 30 H 0.116 0.884 31 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -0.069 -3.324 -6.973 7.725 hybrid contribution -0.656 0.387 -0.420 0.870 sum -0.726 -2.937 -7.393 7.988 Atomic orbital electron populations 1.23156 0.77695 1.04126 1.02081 1.86072 1.21981 1.25471 1.88073 1.18970 0.90736 0.85279 0.94632 1.22068 1.02165 0.91201 1.09532 1.18085 0.86980 0.86977 0.92219 1.42564 1.47368 1.18827 1.18870 1.17154 0.80925 0.88079 0.81220 1.19612 1.06329 0.94054 1.27415 0.86796 1.26365 0.95141 1.02240 0.90564 1.68942 1.18670 1.31103 1.22094 0.85788 0.80673 0.78454 0.79298 1.18390 1.19466 1.17544 1.12605 1.12694 1.12108 0.97342 1.25017 0.91909 0.91349 0.92212 1.81165 1.14873 1.14307 1.10400 1.24532 0.91014 0.91094 0.91022 1.81053 1.14953 1.13015 1.12501 1.67570 1.06496 1.30730 1.15583 1.22341 1.00323 0.84955 0.95733 1.17978 0.86204 0.84420 1.12198 1.91453 1.75111 1.50318 1.94273 0.88055 0.91823 0.92286 0.83196 0.72379 0.88380 0.81584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.90 101.05 1.00 1.30 16 2 O -0.30 -5.07 10.42 -19.11 -0.20 -5.27 16 3 C 0.16 2.86 5.45 -38.82 -0.21 2.65 16 4 C -0.23 -4.09 5.69 -39.10 -0.22 -4.31 16 5 C 0.39 7.58 4.62 -154.79 -0.72 6.87 16 6 N -0.64 -12.84 5.07 -9.75 -0.05 -12.88 16 7 C 0.44 9.30 6.19 -83.54 -0.52 8.78 16 8 C -0.44 -9.04 8.38 -38.32 -0.32 -9.36 16 9 H 0.11 2.33 7.31 -52.49 -0.38 1.94 16 10 C 0.08 1.54 5.43 -17.20 -0.09 1.44 16 11 N -0.78 -15.08 10.86 55.60 0.60 -14.47 16 12 Si 0.94 14.78 29.57 -169.99 -5.03 9.76 16 13 H -0.26 -4.27 7.11 56.52 0.40 -3.86 16 14 H -0.27 -4.11 7.11 56.52 0.40 -3.71 16 15 H -0.25 -4.01 7.11 56.52 0.40 -3.60 16 16 C -0.33 -7.25 5.68 -104.94 -0.60 -7.84 16 17 C 0.30 6.83 10.66 -22.47 -0.24 6.59 16 18 N -0.52 -12.09 14.55 41.84 0.61 -11.48 16 19 C 0.33 7.59 14.07 -22.47 -0.32 7.28 16 20 N -0.53 -12.61 18.54 41.84 0.78 -11.83 16 21 N -0.49 -9.62 10.27 -12.41 -0.13 -9.75 16 22 C 0.13 2.21 10.66 -17.53 -0.19 2.02 16 23 C 0.02 0.27 6.75 -39.16 -0.26 0.01 16 24 F -0.13 -2.35 17.17 2.25 0.04 -2.31 16 25 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.06 0.82 7.22 -51.93 -0.37 0.45 16 27 H 0.06 0.62 8.11 -51.93 -0.42 0.20 16 28 H 0.15 2.50 6.42 -52.49 -0.34 2.16 16 29 H 0.43 8.41 6.39 -40.82 -0.26 8.14 16 30 H 0.30 5.27 8.29 -40.82 -0.34 4.93 16 31 H 0.17 2.37 8.06 -52.49 -0.42 1.94 16 LS Contribution 291.22 15.07 4.39 4.39 Total: -1.00 -25.88 291.22 -3.43 -29.31 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -1.76 Total: 9.12 kcal Atomic # 6 Polarization: 18.10 SS G_CDS: -2.68 Total: 15.41 kcal Atomic # 7 Polarization: -62.23 SS G_CDS: 1.81 Total: -60.42 kcal Atomic # 8 Polarization: -5.07 SS G_CDS: -0.20 Total: -5.27 kcal Atomic # 9 Polarization: -2.35 SS G_CDS: 0.04 Total: -2.31 kcal Atomic # 14 Polarization: 14.78 SS G_CDS: -5.03 Total: 9.76 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -25.88 -3.43 -29.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169079019.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.262 kcal (2) G-P(sol) polarization free energy of solvation -25.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds