Wall clock time and date at job start Tue Mar 31 2020 06:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35798 * 116.99663 * 2 1 4 4 C 1.38930 * 120.81290 * 4.80575 * 3 2 1 5 5 C 1.38855 * 119.05301 * 180.28630 * 4 3 2 6 6 N 1.39288 * 119.64882 * 179.73032 * 5 4 3 7 7 C 1.38369 * 120.00121 * 62.66388 * 6 5 4 8 8 C 1.38976 * 119.99806 * 186.72861 * 7 6 5 9 9 H 1.08001 * 119.99436 * 145.24099 * 8 7 6 10 10 C 1.40841 * 120.00289 * 325.51402 * 8 7 6 11 11 N 1.30333 * 120.00027 * 2.86468 * 10 8 7 12 12 Si 1.86802 * 120.00263 * 182.86541 * 10 8 7 13 13 H 1.48496 * 109.46893 * 89.99754 * 12 10 8 14 14 H 1.48496 * 109.46958 * 210.00121 * 12 10 8 15 15 H 1.48497 * 109.47027 * 330.00130 * 12 10 8 16 16 C 1.41139 * 119.99812 * 6.72875 * 7 6 5 17 17 C 1.43201 * 120.00367 * 7.51427 * 16 7 6 18 18 N 3.50639 * 104.88926 * 47.04081 * 2 1 3 19 19 C 1.43203 * 119.99820 * 187.51716 * 16 7 6 20 20 N 6.77152 * 68.87226 * 44.41810 * 2 1 3 21 21 N 1.32464 * 120.69933 * 359.45003 * 5 4 3 22 22 C 1.32052 * 121.77511 * 0.27801 * 21 5 4 23 23 C 1.38027 * 120.87947 * 0.02562 * 22 21 5 24 24 F 1.35104 * 120.39595 * 180.02562 * 23 22 21 25 25 H 1.09005 * 109.46736 * 184.49032 * 1 2 3 26 26 H 1.09004 * 109.47070 * 304.48836 * 1 2 3 27 27 H 1.09002 * 109.47142 * 64.49004 * 1 2 3 28 28 H 1.07999 * 120.47315 * 0.02737 * 4 3 2 29 29 H 0.97001 * 119.99671 * 242.66001 * 6 5 4 30 30 H 0.97000 * 120.00618 * 185.00460 * 11 10 8 31 31 H 1.07995 * 119.56479 * 179.97438 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2100 0.0000 4 6 1.3091 2.3838 0.1000 5 6 1.9765 3.6014 0.0903 6 7 1.2500 4.7862 0.1842 7 6 0.5011 5.0506 1.3172 8 6 -0.3326 6.1618 1.3553 9 1 -1.2706 6.1150 1.8886 10 6 0.0430 7.3471 0.6937 11 7 1.1453 7.3845 -0.0007 12 14 -1.0387 8.8655 0.8113 13 1 -0.6223 9.6804 1.9808 14 1 -0.8981 9.6707 -0.4284 15 1 -2.4556 8.4524 0.9752 16 6 0.5839 4.1917 2.4342 17 6 1.5575 3.1420 2.4597 18 7 2.3300 2.3093 2.4800 19 6 -0.3059 4.3701 3.5419 20 7 -1.0117 4.5115 4.4207 21 7 3.2971 3.6480 -0.0016 22 6 4.0270 2.5513 -0.0925 23 6 3.4348 1.3045 -0.0956 24 9 4.1910 0.1888 -0.1885 25 1 -0.3633 -1.0246 0.0805 26 1 -0.3633 0.5819 0.8471 27 1 -0.3633 0.4426 -0.9275 28 1 0.2326 2.3499 0.1798 29 1 1.2692 5.4258 -0.5447 30 1 1.4414 8.2193 -0.3961 31 1 5.1015 2.6309 -0.1662 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169079019.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:48 Heat of formation + Delta-G solvation = 15.208039 kcal Electronic energy + Delta-G solvation = -22236.732960 eV Core-core repulsion = 18626.432867 eV Total energy + Delta-G solvation = -3610.300093 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.076 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.88149 -41.95840 -39.84267 -38.50891 -36.93752 -36.53942 -35.09514 -32.49406 -32.41671 -30.13576 -28.68945 -28.45425 -24.52775 -24.20310 -22.73350 -21.04939 -19.73500 -19.03808 -18.76590 -18.53068 -17.56609 -17.36370 -16.79720 -16.38366 -16.15546 -15.62738 -15.41269 -15.11827 -14.88699 -14.78558 -14.64952 -14.21183 -13.64171 -13.50972 -13.46209 -13.36403 -13.34233 -12.91533 -12.67136 -12.63590 -12.54657 -12.45438 -12.04392 -11.85098 -11.19514 -10.72750 -9.91790 -9.69536 -9.06386 -8.56379 -7.10667 -0.21735 0.13652 0.86950 1.47393 1.61548 1.62857 1.95886 2.05488 2.14301 2.18517 2.23717 2.49005 2.70164 2.72201 3.07891 3.34611 3.53706 3.70575 3.77497 4.10350 4.25454 4.28404 4.32372 4.45434 4.58201 4.65842 4.68832 4.92222 5.24282 5.41657 5.69806 5.87819 6.04024 6.36764 6.60266 6.93213 7.04100 7.21445 7.34019 7.92497 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.019831 B = 0.005839 C = 0.005200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.556892 B = 4793.785797 C = 5382.869113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.317 6.317 3 C 0.157 3.843 4 C -0.226 4.226 5 C 0.372 3.628 6 N -0.641 5.641 7 C 0.433 3.567 8 C -0.449 4.449 9 H 0.112 0.888 10 C 0.057 3.943 11 N -0.793 5.793 12 Si 0.995 3.005 13 H -0.267 1.267 14 H -0.256 1.256 15 H -0.253 1.253 16 C -0.340 4.340 17 C 0.304 3.696 18 N -0.538 5.538 19 C 0.336 3.664 20 N -0.553 5.553 21 N -0.509 5.509 22 C 0.126 3.874 23 C 0.005 3.995 24 F -0.132 7.132 25 H 0.132 0.868 26 H 0.053 0.947 27 H 0.077 0.923 28 H 0.160 0.840 29 H 0.429 0.571 30 H 0.315 0.685 31 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.242 -2.234 -9.000 9.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.228 6.228 3 C 0.102 3.898 4 C -0.249 4.249 5 C 0.143 3.857 6 N -0.272 5.272 7 C 0.318 3.682 8 C -0.481 4.481 9 H 0.130 0.870 10 C -0.167 4.167 11 N -0.417 5.417 12 Si 0.815 3.185 13 H -0.192 1.192 14 H -0.180 1.180 15 H -0.176 1.176 16 C -0.360 4.360 17 C -0.002 4.002 18 N -0.221 5.221 19 C 0.029 3.971 20 N -0.237 5.237 21 N -0.225 5.225 22 C -0.032 4.032 23 C -0.019 4.019 24 F -0.110 7.110 25 H 0.150 0.850 26 H 0.072 0.928 27 H 0.096 0.904 28 H 0.177 0.823 29 H 0.276 0.724 30 H 0.128 0.872 31 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -0.457 -2.774 -7.848 8.337 hybrid contribution -0.513 0.201 -0.229 0.596 sum -0.969 -2.573 -8.077 8.533 Atomic orbital electron populations 1.23488 0.75462 1.06207 1.02642 1.86066 1.24278 1.24781 1.87720 1.19103 0.90981 0.85777 0.93973 1.22094 1.02630 0.90798 1.09406 1.18234 0.87231 0.87178 0.93079 1.42500 1.47320 1.19002 1.18368 1.17229 0.81482 0.88158 0.81370 1.19801 1.06106 0.94550 1.27617 0.87038 1.26999 0.95922 1.03832 0.89929 1.68937 1.18974 1.32429 1.21375 0.84930 0.78945 0.75332 0.79341 1.19224 1.17973 1.17629 1.12643 1.12975 1.12696 0.97726 1.25098 0.91852 0.91294 0.91936 1.81145 1.15351 1.14784 1.10868 1.24664 0.90828 0.90667 0.90913 1.81039 1.15754 1.13814 1.13062 1.67562 1.06736 1.31718 1.16477 1.22795 1.01552 0.84322 0.94577 1.18151 0.86517 0.84706 1.12484 1.91450 1.75061 1.50246 1.94288 0.85026 0.92780 0.90425 0.82294 0.72415 0.87187 0.78682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.90 113.37 1.12 1.48 16 2 O -0.32 -10.19 10.42 -91.28 -0.95 -11.14 16 3 C 0.16 5.54 5.45 22.76 0.12 5.67 16 4 C -0.23 -8.06 5.69 22.58 0.13 -7.94 16 5 C 0.37 14.42 4.62 132.88 0.61 15.03 16 6 N -0.64 -25.27 5.07 -184.77 -0.94 -26.20 16 7 C 0.43 18.13 6.19 39.00 0.24 18.37 16 8 C -0.45 -18.03 8.38 23.08 0.19 -17.83 16 9 H 0.11 4.49 7.31 -2.91 -0.02 4.46 16 10 C 0.06 2.06 5.43 85.55 0.46 2.53 16 11 N -0.79 -29.34 10.86 21.98 0.24 -29.10 16 12 Si 1.00 28.59 29.57 68.60 2.03 30.62 16 13 H -0.27 -8.05 7.11 99.48 0.71 -7.34 16 14 H -0.26 -6.76 7.11 99.48 0.71 -6.06 16 15 H -0.25 -7.28 7.11 99.48 0.71 -6.58 16 16 C -0.34 -15.04 5.68 -20.07 -0.11 -15.15 16 17 C 0.30 13.73 10.66 88.33 0.94 14.67 16 18 N -0.54 -24.65 14.55 19.00 0.28 -24.37 16 19 C 0.34 15.39 14.07 88.33 1.24 16.63 16 20 N -0.55 -26.11 18.54 19.00 0.35 -25.76 16 21 N -0.51 -19.76 10.27 -193.16 -1.98 -21.74 16 22 C 0.13 4.32 10.66 84.61 0.90 5.22 16 23 C 0.00 0.16 6.75 22.54 0.15 0.31 16 24 F -0.13 -4.53 17.17 44.97 0.77 -3.76 16 25 H 0.13 2.17 8.14 -2.38 -0.02 2.15 16 26 H 0.05 1.35 7.22 -2.38 -0.02 1.33 16 27 H 0.08 1.48 8.11 -2.39 -0.02 1.46 16 28 H 0.16 5.24 6.42 -2.91 -0.02 5.22 16 29 H 0.43 16.58 6.39 -92.71 -0.59 15.99 16 30 H 0.32 10.33 8.29 -92.71 -0.77 9.56 16 31 H 0.20 5.24 8.06 -2.91 -0.02 5.22 16 Total: -1.00 -53.50 291.22 6.45 -47.05 By element: Atomic # 1 Polarization: 24.77 SS G_CDS: 0.64 Total: 25.41 kcal Atomic # 6 Polarization: 32.97 SS G_CDS: 6.01 Total: 38.99 kcal Atomic # 7 Polarization: -125.12 SS G_CDS: -2.05 Total: -127.17 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: -0.95 Total: -11.14 kcal Atomic # 9 Polarization: -4.53 SS G_CDS: 0.77 Total: -3.76 kcal Atomic # 14 Polarization: 28.59 SS G_CDS: 2.03 Total: 30.62 kcal Total: -53.50 6.45 -47.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169079019.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.258 kcal (2) G-P(sol) polarization free energy of solvation -53.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds