Wall clock time and date at job start Tue Mar 31 2020 06:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35815 * 116.99765 * 2 1 4 4 C 1.39414 * 120.81126 * 359.97438 * 3 2 1 5 5 C 1.37859 * 119.27286 * 180.02562 * 4 3 2 6 6 N 1.32041 * 120.94163 * 359.72402 * 5 4 3 7 7 C 1.32459 * 121.77578 * 0.56535 * 6 5 4 8 8 N 1.39308 * 119.68806 * 179.70664 * 7 6 5 9 9 C 1.38353 * 119.99635 * 359.59111 * 8 7 6 10 10 C 1.38983 * 120.00100 * 303.09102 * 9 8 7 11 11 H 1.07994 * 120.00644 * 152.26570 * 10 9 8 12 12 C 1.40844 * 119.99658 * 332.26325 * 10 9 8 13 13 N 1.30339 * 120.00303 * 351.93954 * 12 10 9 14 14 Si 1.86806 * 120.00081 * 171.93098 * 12 10 9 15 15 H 1.48505 * 109.46930 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.47057 * 119.99963 * 14 12 10 17 17 H 1.48495 * 109.47319 * 240.00571 * 14 12 10 18 18 C 1.41145 * 120.00400 * 123.09244 * 9 8 7 19 19 C 1.43199 * 120.00602 * 173.75864 * 18 9 8 20 20 N 9.42212 * 135.95951 * 7.78370 * 2 1 3 21 21 C 1.43200 * 119.99728 * 353.75640 * 18 9 8 22 22 N 7.10905 * 145.34525 * 48.20434 * 2 1 3 23 23 C 1.39038 * 120.62786 * 359.43901 * 7 6 5 24 24 F 1.35100 * 120.49516 * 180.25200 * 23 7 6 25 25 H 1.09000 * 109.47613 * 299.99330 * 1 2 3 26 26 H 1.09006 * 109.47406 * 59.99849 * 1 2 3 27 27 H 1.09005 * 109.47085 * 179.97438 * 1 2 3 28 28 H 1.08001 * 120.36684 * 0.04357 * 4 3 2 29 29 H 1.07992 * 119.52918 * 180.02562 * 5 4 3 30 30 H 0.96998 * 120.00339 * 179.85932 * 8 7 6 31 31 H 0.97001 * 119.99872 * 185.03573 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0455 1.2101 0.0000 4 6 1.3027 2.3900 -0.0005 5 6 1.9613 3.6011 -0.0011 6 7 3.2805 3.6565 0.0044 7 6 4.0248 2.5608 -0.0005 8 7 5.4136 2.6699 -0.0006 9 6 6.0092 3.9187 -0.0041 10 6 5.7154 4.8259 -1.0152 11 1 5.7847 5.8869 -0.8257 12 6 5.3275 4.3616 -2.2870 13 7 5.3945 3.0900 -2.5650 14 14 4.7165 5.5683 -3.5755 15 1 4.7362 6.9433 -3.0148 16 1 5.5992 5.5080 -4.7682 17 1 3.3291 5.2132 -3.9680 18 6 6.9153 4.2714 1.0190 19 6 7.6328 5.5084 0.9451 20 7 8.2020 6.4896 0.8871 21 6 7.1169 3.3921 2.1312 22 7 7.2768 2.6942 3.0137 23 6 3.4330 1.3026 -0.0001 24 9 4.1947 0.1868 0.0000 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2233 2.3556 -0.0003 29 1 1.3901 4.5176 -0.0011 30 1 5.9629 1.8706 -0.0022 31 1 5.1975 2.7787 -3.4623 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169079044.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:50 Heat of formation + Delta-G solvation = 18.296902 kcal Electronic energy + Delta-G solvation = -21986.211197 eV Core-core repulsion = 18376.045047 eV Total energy + Delta-G solvation = -3610.166150 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.076 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.26440 -40.19417 -38.57548 -36.90828 -35.16024 -34.66575 -33.58510 -31.12564 -30.92604 -28.81489 -27.29532 -27.03808 -23.22029 -22.75702 -21.17381 -19.17373 -18.24041 -17.63639 -17.09269 -16.69881 -16.26842 -16.09216 -15.86815 -14.94030 -14.82145 -14.52991 -13.93255 -13.76518 -13.25735 -13.06112 -12.78405 -12.53422 -12.28077 -12.21651 -11.77895 -11.71597 -11.62962 -11.53721 -11.44912 -11.34034 -10.96864 -10.88007 -10.67401 -10.09311 -9.93757 -9.13585 -8.54580 -8.17072 -7.72129 -6.96178 -5.35431 1.44857 1.59716 2.26966 2.74384 2.83002 2.86415 3.04979 3.45242 3.75710 3.92131 4.10105 4.16345 4.32795 4.36386 4.55799 4.83167 5.01626 5.03965 5.08095 5.18965 5.22750 5.33255 5.63958 5.82269 6.12040 6.12959 6.29100 6.34310 6.52214 7.10926 7.24419 7.36606 7.62580 7.81168 8.01075 8.27583 8.70209 9.00116 9.18202 9.28524 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.014018 B = 0.007183 C = 0.005462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.942058 B = 3896.921316 C = 5125.395570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.308 6.308 3 C 0.168 3.832 4 C -0.312 4.312 5 C 0.174 3.826 6 N -0.509 5.509 7 C 0.451 3.549 8 N -0.628 5.628 9 C 0.388 3.612 10 C -0.350 4.350 11 H 0.112 0.888 12 C 0.077 3.923 13 N -0.734 5.734 14 Si 0.927 3.073 15 H -0.247 1.247 16 H -0.266 1.266 17 H -0.264 1.264 18 C -0.308 4.308 19 C 0.329 3.671 20 N -0.534 5.534 21 C 0.308 3.692 22 N -0.534 5.534 23 C -0.057 4.057 24 F -0.133 7.133 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.099 0.901 28 H 0.136 0.864 29 H 0.160 0.840 30 H 0.412 0.588 31 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.979 -4.132 -5.126 15.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.219 6.219 3 C 0.114 3.886 4 C -0.336 4.336 5 C 0.014 3.986 6 N -0.228 5.228 7 C 0.213 3.787 8 N -0.250 5.250 9 C 0.284 3.716 10 C -0.378 4.378 11 H 0.130 0.870 12 C -0.153 4.153 13 N -0.353 5.353 14 Si 0.748 3.252 15 H -0.170 1.170 16 H -0.190 1.190 17 H -0.188 1.188 18 C -0.327 4.327 19 C 0.021 3.979 20 N -0.216 5.216 21 C 0.001 3.999 22 N -0.217 5.217 23 C -0.084 4.084 24 F -0.112 7.112 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.117 0.883 28 H 0.154 0.846 29 H 0.177 0.823 30 H 0.251 0.749 31 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.327 -3.254 -3.988 13.358 hybrid contribution -0.980 -1.076 -1.083 1.814 sum -13.307 -4.330 -5.070 14.884 Atomic orbital electron populations 1.23086 0.78009 1.03877 1.01654 1.86083 1.21666 1.26031 1.88146 1.18965 0.90201 0.85411 0.94053 1.21724 1.00849 0.92118 1.18910 1.22295 0.89187 0.96805 0.90335 1.67567 1.06386 1.28222 1.20623 1.17818 0.85885 0.86402 0.88580 1.41519 1.01255 1.08359 1.73844 1.16646 0.85514 0.81198 0.88253 1.20148 1.28364 0.96643 0.92619 0.87006 1.26501 0.91381 0.96292 1.01106 1.69463 1.26755 1.15763 1.23367 0.85887 0.79350 0.81248 0.78684 1.16957 1.19019 1.18839 1.12890 1.21830 0.96419 1.01540 1.24598 0.90694 0.91120 0.91529 1.81041 1.15703 1.13585 1.11285 1.25270 0.91148 0.92035 0.91482 1.81084 1.14667 1.12770 1.13167 1.17118 0.86151 0.82880 1.22277 1.91426 1.74791 1.49666 1.95317 0.92351 0.92401 0.88250 0.84603 0.82294 0.74932 0.88818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.84 101.05 0.99 1.25 16 2 O -0.31 -4.46 10.41 -19.16 -0.20 -4.66 16 3 C 0.17 2.69 6.73 -38.84 -0.26 2.43 16 4 C -0.31 -4.19 9.11 -39.28 -0.36 -4.54 16 5 C 0.17 2.54 11.17 -17.60 -0.20 2.35 16 6 N -0.51 -9.44 8.56 -12.40 -0.11 -9.55 16 7 C 0.45 8.81 6.25 -154.71 -0.97 7.84 16 8 N -0.63 -12.85 3.38 -9.70 -0.03 -12.88 16 9 C 0.39 8.34 5.49 -83.54 -0.46 7.88 16 10 C -0.35 -7.35 7.33 -38.32 -0.28 -7.63 16 11 H 0.11 2.39 7.31 -52.49 -0.38 2.00 16 12 C 0.08 1.50 4.91 -17.20 -0.08 1.42 16 13 N -0.73 -14.47 11.41 55.60 0.63 -13.83 16 14 Si 0.93 15.25 29.58 -169.99 -5.03 10.22 16 15 H -0.25 -4.13 7.11 56.52 0.40 -3.73 16 16 H -0.27 -4.34 7.11 56.52 0.40 -3.94 16 17 H -0.26 -4.28 7.11 56.52 0.40 -3.88 16 18 C -0.31 -6.95 5.88 -104.94 -0.62 -7.57 16 19 C 0.33 7.68 14.06 -22.48 -0.32 7.36 16 20 N -0.53 -12.89 18.54 41.83 0.78 -12.11 16 21 C 0.31 7.17 14.83 -22.46 -0.33 6.84 16 22 N -0.53 -12.94 18.54 41.85 0.78 -12.16 16 23 C -0.06 -1.06 7.36 -38.98 -0.29 -1.35 16 24 F -0.13 -2.59 16.53 2.25 0.04 -2.55 16 25 H 0.06 0.45 7.71 -51.93 -0.40 0.05 16 26 H 0.06 0.44 7.71 -51.93 -0.40 0.04 16 27 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.14 1.33 6.46 -52.49 -0.34 1.00 16 29 H 0.16 1.75 8.06 -52.49 -0.42 1.33 16 30 H 0.41 8.30 8.29 -40.82 -0.34 7.96 16 31 H 0.30 5.40 8.29 -40.82 -0.34 5.06 16 LS Contribution 303.19 15.07 4.57 4.57 Total: -1.00 -26.97 303.19 -3.58 -30.56 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -1.84 Total: 6.13 kcal Atomic # 6 Polarization: 19.44 SS G_CDS: -3.17 Total: 16.27 kcal Atomic # 7 Polarization: -62.58 SS G_CDS: 2.05 Total: -60.54 kcal Atomic # 8 Polarization: -4.46 SS G_CDS: -0.20 Total: -4.66 kcal Atomic # 9 Polarization: -2.59 SS G_CDS: 0.04 Total: -2.55 kcal Atomic # 14 Polarization: 15.25 SS G_CDS: -5.03 Total: 10.22 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -26.97 -3.58 -30.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169079044.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.852 kcal (2) G-P(sol) polarization free energy of solvation -26.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds