Wall clock time and date at job start Tue Mar 31 2020 06:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35815 * 116.99765 * 2 1 4 4 C 1.39414 * 120.81126 * 359.97438 * 3 2 1 5 5 C 1.37859 * 119.27286 * 180.02562 * 4 3 2 6 6 N 1.32041 * 120.94163 * 359.72402 * 5 4 3 7 7 C 1.32459 * 121.77578 * 0.56535 * 6 5 4 8 8 N 1.39308 * 119.68806 * 179.70664 * 7 6 5 9 9 C 1.38353 * 119.99635 * 359.59111 * 8 7 6 10 10 C 1.38983 * 120.00100 * 303.09102 * 9 8 7 11 11 H 1.07994 * 120.00644 * 152.26570 * 10 9 8 12 12 C 1.40844 * 119.99658 * 332.26325 * 10 9 8 13 13 N 1.30339 * 120.00303 * 351.93954 * 12 10 9 14 14 Si 1.86806 * 120.00081 * 171.93098 * 12 10 9 15 15 H 1.48505 * 109.46930 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.47057 * 119.99963 * 14 12 10 17 17 H 1.48495 * 109.47319 * 240.00571 * 14 12 10 18 18 C 1.41145 * 120.00400 * 123.09244 * 9 8 7 19 19 C 1.43199 * 120.00602 * 173.75864 * 18 9 8 20 20 N 9.42212 * 135.95951 * 7.78370 * 2 1 3 21 21 C 1.43200 * 119.99728 * 353.75640 * 18 9 8 22 22 N 7.10905 * 145.34525 * 48.20434 * 2 1 3 23 23 C 1.39038 * 120.62786 * 359.43901 * 7 6 5 24 24 F 1.35100 * 120.49516 * 180.25200 * 23 7 6 25 25 H 1.09000 * 109.47613 * 299.99330 * 1 2 3 26 26 H 1.09006 * 109.47406 * 59.99849 * 1 2 3 27 27 H 1.09005 * 109.47085 * 179.97438 * 1 2 3 28 28 H 1.08001 * 120.36684 * 0.04357 * 4 3 2 29 29 H 1.07992 * 119.52918 * 180.02562 * 5 4 3 30 30 H 0.96998 * 120.00339 * 179.85932 * 8 7 6 31 31 H 0.97001 * 119.99872 * 185.03573 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0455 1.2101 0.0000 4 6 1.3027 2.3900 -0.0005 5 6 1.9613 3.6011 -0.0011 6 7 3.2805 3.6565 0.0044 7 6 4.0248 2.5608 -0.0005 8 7 5.4136 2.6699 -0.0006 9 6 6.0092 3.9187 -0.0041 10 6 5.7154 4.8259 -1.0152 11 1 5.7847 5.8869 -0.8257 12 6 5.3275 4.3616 -2.2870 13 7 5.3945 3.0900 -2.5650 14 14 4.7165 5.5683 -3.5755 15 1 4.7362 6.9433 -3.0148 16 1 5.5992 5.5080 -4.7682 17 1 3.3291 5.2132 -3.9680 18 6 6.9153 4.2714 1.0190 19 6 7.6328 5.5084 0.9451 20 7 8.2020 6.4896 0.8871 21 6 7.1169 3.3921 2.1312 22 7 7.2768 2.6942 3.0137 23 6 3.4330 1.3026 -0.0001 24 9 4.1947 0.1868 0.0000 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2233 2.3556 -0.0003 29 1 1.3901 4.5176 -0.0011 30 1 5.9629 1.8706 -0.0022 31 1 5.1975 2.7787 -3.4623 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169079044.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:50 Heat of formation + Delta-G solvation = 3.102241 kcal Electronic energy + Delta-G solvation = -21986.870087 eV Core-core repulsion = 18376.045047 eV Total energy + Delta-G solvation = -3610.825040 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.076 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.67355 -41.40692 -39.81985 -38.38558 -36.89330 -36.51768 -35.10168 -32.65474 -32.12620 -30.10624 -28.76110 -28.16345 -24.49430 -24.06807 -22.66085 -20.74671 -19.54821 -19.13762 -18.53435 -18.04837 -17.70424 -17.28929 -17.13170 -16.41138 -16.04322 -15.59217 -15.23317 -14.98846 -14.64109 -14.45336 -14.44717 -14.26000 -13.86749 -13.44906 -13.42747 -13.33994 -13.15495 -13.07550 -12.71621 -12.67788 -12.45714 -12.29163 -12.01976 -11.54596 -11.34818 -10.41706 -9.79832 -9.69309 -9.20617 -8.44840 -7.06541 0.16406 0.32559 0.80748 1.39225 1.54038 1.55927 1.90928 2.06800 2.11368 2.22917 2.36666 2.60532 2.74528 2.91996 3.27811 3.43132 3.72440 3.84779 3.90260 3.99454 4.41212 4.43619 4.62187 4.64125 4.75147 4.79268 4.88177 5.00079 5.30856 5.47179 5.76731 6.02963 6.21456 6.25980 6.50958 6.71721 7.18247 7.31115 7.38620 7.78675 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.014018 B = 0.007183 C = 0.005462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.942058 B = 3896.921316 C = 5125.395570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.329 6.329 3 C 0.168 3.832 4 C -0.290 4.290 5 C 0.170 3.830 6 N -0.537 5.537 7 C 0.433 3.567 8 N -0.637 5.637 9 C 0.382 3.618 10 C -0.346 4.346 11 H 0.106 0.894 12 C 0.052 3.948 13 N -0.741 5.741 14 Si 0.982 3.018 15 H -0.251 1.251 16 H -0.261 1.261 17 H -0.254 1.254 18 C -0.325 4.325 19 C 0.333 3.667 20 N -0.555 5.555 21 C 0.315 3.685 22 N -0.560 5.560 23 C -0.091 4.091 24 F -0.148 7.148 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.121 0.879 28 H 0.181 0.819 29 H 0.199 0.801 30 H 0.407 0.593 31 H 0.310 0.690 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.060 -3.779 -6.568 18.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.241 6.241 3 C 0.114 3.886 4 C -0.313 4.313 5 C 0.011 3.989 6 N -0.256 5.256 7 C 0.197 3.803 8 N -0.259 5.259 9 C 0.278 3.722 10 C -0.373 4.373 11 H 0.124 0.876 12 C -0.178 4.178 13 N -0.360 5.360 14 Si 0.801 3.199 15 H -0.174 1.174 16 H -0.185 1.185 17 H -0.177 1.177 18 C -0.345 4.345 19 C 0.027 3.973 20 N -0.239 5.239 21 C 0.009 3.991 22 N -0.244 5.244 23 C -0.118 4.118 24 F -0.127 7.127 25 H 0.093 0.907 26 H 0.094 0.906 27 H 0.139 0.861 28 H 0.198 0.802 29 H 0.216 0.784 30 H 0.244 0.756 31 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -15.448 -2.932 -5.419 16.632 hybrid contribution -0.259 -1.278 -0.728 1.494 sum -15.707 -4.211 -6.147 17.385 Atomic orbital electron populations 1.23516 0.74960 1.06043 1.03259 1.86076 1.24771 1.25512 1.87699 1.19138 0.89490 0.86945 0.93065 1.22157 1.02814 0.90487 1.15842 1.23039 0.88139 0.98943 0.88779 1.67565 1.08263 1.28176 1.21611 1.17918 0.85455 0.87160 0.89759 1.41428 1.01956 1.07533 1.74979 1.16659 0.85592 0.81981 0.88008 1.20301 1.27552 0.96281 0.93195 0.87609 1.27109 0.91189 0.97570 1.01884 1.69477 1.25426 1.16769 1.24281 0.85087 0.79308 0.79012 0.76506 1.17438 1.18538 1.17747 1.12978 1.23013 0.96358 1.02102 1.24727 0.90392 0.91124 0.91083 1.81020 1.16613 1.14214 1.12007 1.25404 0.90600 0.91766 0.91303 1.81060 1.15778 1.13567 1.13976 1.17461 0.87570 0.82334 1.24441 1.91372 1.75418 1.50260 1.95649 0.90678 0.90648 0.86108 0.80196 0.78430 0.75556 0.87803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.84 113.37 1.12 1.34 16 2 O -0.33 -8.83 10.41 -91.48 -0.95 -9.78 16 3 C 0.17 5.07 6.73 22.75 0.15 5.23 16 4 C -0.29 -6.69 9.11 22.46 0.20 -6.49 16 5 C 0.17 4.43 11.17 84.57 0.94 5.37 16 6 N -0.54 -19.24 8.56 -193.15 -1.65 -20.89 16 7 C 0.43 16.94 6.25 132.92 0.83 17.77 16 8 N -0.64 -26.69 3.38 -184.62 -0.62 -27.31 16 9 C 0.38 16.73 5.49 39.01 0.21 16.94 16 10 C -0.35 -14.48 7.33 23.09 0.17 -14.31 16 11 H 0.11 4.51 7.31 -2.91 -0.02 4.48 16 12 C 0.05 1.96 4.91 85.55 0.42 2.38 16 13 N -0.74 -28.62 11.41 21.98 0.25 -28.37 16 14 Si 0.98 29.46 29.58 68.60 2.03 31.48 16 15 H -0.25 -7.71 7.11 99.48 0.71 -7.00 16 16 H -0.26 -7.64 7.11 99.48 0.71 -6.94 16 17 H -0.25 -7.18 7.11 99.48 0.71 -6.47 16 18 C -0.33 -15.04 5.88 -20.07 -0.12 -15.16 16 19 C 0.33 15.87 14.06 88.33 1.24 17.11 16 20 N -0.56 -27.12 18.54 19.00 0.35 -26.76 16 21 C 0.31 15.13 14.83 88.33 1.31 16.44 16 22 N -0.56 -27.87 18.54 19.01 0.35 -27.52 16 23 C -0.09 -3.40 7.36 22.66 0.17 -3.24 16 24 F -0.15 -5.94 16.53 44.97 0.74 -5.19 16 25 H 0.07 0.82 7.71 -2.39 -0.02 0.80 16 26 H 0.07 0.81 7.71 -2.38 -0.02 0.79 16 27 H 0.12 1.18 8.14 -2.38 -0.02 1.16 16 28 H 0.18 2.48 6.46 -2.91 -0.02 2.46 16 29 H 0.20 3.44 8.06 -2.91 -0.02 3.42 16 30 H 0.41 17.19 8.29 -92.71 -0.77 16.42 16 31 H 0.31 10.74 8.29 -92.71 -0.77 9.97 16 Total: -1.00 -59.48 303.19 7.61 -51.87 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: 0.46 Total: 19.11 kcal Atomic # 6 Polarization: 36.71 SS G_CDS: 6.65 Total: 43.37 kcal Atomic # 7 Polarization: -129.53 SS G_CDS: -1.32 Total: -130.85 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -0.95 Total: -9.78 kcal Atomic # 9 Polarization: -5.94 SS G_CDS: 0.74 Total: -5.19 kcal Atomic # 14 Polarization: 29.46 SS G_CDS: 2.03 Total: 31.48 kcal Total: -59.48 7.61 -51.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169079044.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.969 kcal (2) G-P(sol) polarization free energy of solvation -59.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds