Wall clock time and date at job start Tue Mar 31 2020 06:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36064 * 116.99724 * 2 1 4 4 C 1.38679 * 120.51278 * 270.02011 * 3 2 1 5 5 F 1.35093 * 119.64753 * 359.97438 * 4 3 2 6 6 N 1.32127 * 120.70640 * 179.97438 * 4 3 2 7 7 C 1.32025 * 121.90534 * 0.02562 * 6 4 3 8 8 C 1.37898 * 120.96385 * 359.71661 * 7 6 4 9 9 C 1.39419 * 119.17879 * 0.53696 * 8 7 6 10 10 N 1.39554 * 120.86396 * 179.75020 * 9 8 7 11 11 C 1.38316 * 120.00097 * 354.19198 * 10 9 8 12 12 C 1.38994 * 119.99648 * 299.95596 * 11 10 9 13 13 H 1.07995 * 120.00045 * 151.29111 * 12 11 10 14 14 C 1.40836 * 120.00306 * 331.28821 * 12 11 10 15 15 N 1.30334 * 120.00168 * 167.62940 * 14 12 11 16 16 Si 1.86800 * 119.99684 * 347.63044 * 14 12 11 17 17 H 1.48500 * 109.47343 * 88.72996 * 16 14 12 18 18 H 1.48502 * 109.47342 * 208.73284 * 16 14 12 19 19 H 1.48499 * 109.47347 * 328.73137 * 16 14 12 20 20 C 1.41158 * 120.00266 * 119.94983 * 11 10 9 21 21 C 1.43195 * 120.00154 * 174.72427 * 20 11 10 22 22 N 7.58587 * 96.95799 * 65.36540 * 2 1 3 23 23 C 1.43204 * 119.99721 * 354.45280 * 20 11 10 24 24 N 5.15788 * 62.38687 * 62.77444 * 2 1 3 25 25 H 1.09005 * 109.46879 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46938 * 299.99732 * 1 2 3 27 27 H 1.08997 * 109.47226 * 60.00421 * 1 2 3 28 28 H 1.08000 * 119.51822 * 179.97438 * 7 6 4 29 29 H 1.08010 * 120.41275 * 180.31124 * 8 7 6 30 30 H 0.96990 * 120.00104 * 174.19052 * 10 9 8 31 31 H 0.97005 * 119.99567 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2124 0.0000 4 6 2.3659 1.8399 -1.1947 5 9 2.0609 1.2410 -2.3666 6 7 2.9652 3.0175 -1.1992 7 6 3.2840 3.6424 -0.0808 8 6 2.9961 3.0880 1.1486 9 6 2.3690 1.8440 1.2031 10 7 2.0661 1.2481 2.4282 11 6 2.4940 1.8329 3.6063 12 6 3.8520 2.0201 3.8360 13 1 4.1866 2.8347 4.4611 14 6 4.7915 1.1474 3.2537 15 7 6.0585 1.4531 3.2637 16 14 4.2218 -0.4481 2.4669 17 1 3.8925 -0.2061 1.0393 18 1 5.3044 -1.4604 2.5605 19 1 3.0157 -0.9465 3.1755 20 6 1.5516 2.2398 4.5753 21 6 1.9966 2.7407 5.8408 22 7 2.3480 3.1387 6.8447 23 6 0.1506 2.1570 4.2905 24 7 -0.9617 2.0909 4.0640 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 3.7738 4.6037 -0.1294 29 1 3.2564 3.6094 2.0580 30 1 1.5554 0.4239 2.4534 31 1 6.7056 0.8518 2.8629 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169080444.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:46 Heat of formation + Delta-G solvation = 7.236031 kcal Electronic energy + Delta-G solvation = -22376.221941 eV Core-core repulsion = 18765.576156 eV Total energy + Delta-G solvation = -3610.645785 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.076 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.07618 -41.82406 -39.26234 -38.97563 -37.15198 -36.60369 -35.66523 -33.29029 -31.47556 -30.69262 -29.07434 -27.90623 -24.81000 -24.29220 -22.76117 -20.93909 -19.75158 -19.39605 -18.91170 -18.43313 -17.97990 -17.42500 -17.06321 -16.75109 -16.20286 -15.64232 -15.30376 -14.96224 -14.88355 -14.57021 -14.48130 -14.39703 -14.16445 -13.76712 -13.56837 -13.50660 -13.44778 -13.18866 -12.90203 -12.82495 -12.68658 -12.37049 -11.89344 -11.62397 -11.33531 -10.60072 -10.16592 -9.88675 -9.43245 -8.95634 -7.23444 -0.20099 -0.01033 0.45580 1.26995 1.36211 1.42466 1.83307 1.94025 2.02594 2.18693 2.28920 2.44248 2.52677 2.57726 2.83897 3.29535 3.55124 3.65355 3.84278 4.01134 4.34144 4.35905 4.37561 4.45894 4.66187 4.69821 4.76685 4.91214 5.23163 5.42414 5.50145 5.72864 6.00774 6.09792 6.33326 6.47434 6.67058 7.08483 7.27568 7.55483 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.014570 B = 0.007945 C = 0.006717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.263887 B = 3523.253024 C = 4167.516965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.329 6.329 3 C -0.050 4.050 4 C 0.307 3.693 5 F -0.113 7.113 6 N -0.548 5.548 7 C 0.167 3.833 8 C -0.215 4.215 9 C 0.248 3.752 10 N -0.671 5.671 11 C 0.344 3.656 12 C -0.348 4.348 13 H 0.109 0.891 14 C 0.065 3.935 15 N -0.735 5.735 16 Si 0.940 3.060 17 H -0.242 1.242 18 H -0.281 1.281 19 H -0.247 1.247 20 C -0.293 4.293 21 C 0.328 3.672 22 N -0.547 5.547 23 C 0.314 3.686 24 N -0.542 5.542 25 H 0.123 0.877 26 H 0.041 0.959 27 H 0.053 0.947 28 H 0.208 0.792 29 H 0.164 0.836 30 H 0.412 0.588 31 H 0.317 0.683 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.096 -3.047 -9.950 10.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.244 6.244 3 C -0.103 4.103 4 C 0.153 3.847 5 F -0.092 7.092 6 N -0.268 5.268 7 C 0.012 3.988 8 C -0.239 4.239 9 C 0.138 3.862 10 N -0.298 5.298 11 C 0.242 3.758 12 C -0.375 4.375 13 H 0.127 0.873 14 C -0.167 4.167 15 N -0.352 5.352 16 Si 0.763 3.237 17 H -0.166 1.166 18 H -0.207 1.207 19 H -0.171 1.171 20 C -0.312 4.312 21 C 0.020 3.980 22 N -0.229 5.229 23 C 0.007 3.993 24 N -0.225 5.225 25 H 0.141 0.859 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.224 0.776 29 H 0.181 0.819 30 H 0.252 0.748 31 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.468 -2.282 -9.494 9.776 hybrid contribution -0.308 -1.390 0.218 1.441 sum -0.776 -3.673 -9.276 10.007 Atomic orbital electron populations 1.23328 0.77874 1.05182 1.00933 1.86182 1.21289 1.22952 1.93985 1.18701 1.09708 0.91438 0.90408 1.18284 0.96784 0.89396 0.80221 1.91568 1.90261 1.81518 1.45884 1.67171 1.17270 1.08093 1.34221 1.22835 0.92438 0.99161 0.84324 1.22210 1.04736 0.94916 1.02058 1.18273 0.92193 0.91556 0.84209 1.42160 1.57648 1.27928 1.02045 1.16623 0.90515 0.86402 0.82288 1.20045 0.89141 1.09386 1.18938 0.87280 1.26976 0.94323 1.02524 0.92912 1.69353 1.03780 1.36977 1.25140 0.85743 0.79704 0.76799 0.81475 1.16558 1.20746 1.17112 1.12765 0.83279 1.41664 0.93459 1.24767 0.91720 0.90316 0.91170 1.81069 1.09494 1.18682 1.13688 1.25247 0.91750 0.90463 0.91859 1.81136 1.12139 1.18622 1.10587 0.85886 0.94010 0.92803 0.77592 0.81900 0.74845 0.87008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 11.13 113.37 1.26 1.76 16 2 O -0.33 -9.82 9.61 -94.28 -0.91 -10.73 16 3 C -0.05 -1.58 4.67 22.72 0.11 -1.48 16 4 C 0.31 9.79 8.42 84.75 0.71 10.50 16 5 F -0.11 -3.57 17.13 44.97 0.77 -2.80 16 6 N -0.55 -16.58 10.37 -196.87 -2.04 -18.62 16 7 C 0.17 4.30 11.17 84.58 0.94 5.24 16 8 C -0.22 -6.25 8.91 22.47 0.20 -6.05 16 9 C 0.25 7.86 4.56 38.54 0.18 8.04 16 10 N -0.67 -21.97 2.23 -178.99 -0.40 -22.37 16 11 C 0.34 12.27 4.48 39.02 0.17 12.44 16 12 C -0.35 -13.01 7.12 23.09 0.16 -12.85 16 13 H 0.11 4.49 7.51 -2.91 -0.02 4.46 16 14 C 0.06 2.35 5.35 85.55 0.46 2.81 16 15 N -0.73 -27.50 13.90 21.98 0.31 -27.19 16 16 Si 0.94 30.94 24.41 68.60 1.67 32.61 16 17 H -0.24 -8.13 5.45 99.48 0.54 -7.59 16 18 H -0.28 -9.21 7.11 99.48 0.71 -8.50 16 19 H -0.25 -7.98 6.65 99.48 0.66 -7.32 16 20 C -0.29 -11.30 5.88 -20.07 -0.12 -11.42 16 21 C 0.33 13.83 14.06 88.34 1.24 15.07 16 22 N -0.55 -24.64 18.53 19.00 0.35 -24.29 16 23 C 0.31 12.46 14.83 88.32 1.31 13.77 16 24 N -0.54 -22.54 18.54 19.02 0.35 -22.18 16 25 H 0.12 2.19 8.14 -2.38 -0.02 2.17 16 26 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.21 3.64 8.06 -2.91 -0.02 3.62 16 29 H 0.16 4.74 6.30 -2.91 -0.02 4.72 16 30 H 0.41 13.00 7.26 -92.72 -0.67 12.32 16 31 H 0.32 10.63 8.29 -92.70 -0.77 9.87 16 Total: -1.00 -48.87 296.35 7.09 -41.78 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: 0.35 Total: 15.95 kcal Atomic # 6 Polarization: 31.21 SS G_CDS: 6.63 Total: 37.84 kcal Atomic # 7 Polarization: -113.23 SS G_CDS: -1.43 Total: -114.66 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: -0.91 Total: -10.73 kcal Atomic # 9 Polarization: -3.57 SS G_CDS: 0.77 Total: -2.80 kcal Atomic # 14 Polarization: 30.94 SS G_CDS: 1.67 Total: 32.61 kcal Total: -48.87 7.09 -41.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169080444.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.017 kcal (2) G-P(sol) polarization free energy of solvation -48.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds