Wall clock time and date at job start Tue Mar 31 2020 06:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35722 * 116.99871 * 2 1 4 4 C 1.38652 * 119.62526 * 180.02562 * 3 2 1 5 5 C 1.39144 * 119.04654 * 179.70007 * 4 3 2 6 6 N 1.39450 * 120.83950 * 180.28884 * 5 4 3 7 7 C 1.38338 * 119.99909 * 356.57383 * 6 5 4 8 8 C 1.38983 * 119.99829 * 300.04503 * 7 6 5 9 9 H 1.08002 * 120.00210 * 152.74090 * 8 7 6 10 10 C 1.40846 * 119.99864 * 332.73558 * 8 7 6 11 11 N 1.30332 * 119.99944 * 164.10406 * 10 8 7 12 12 Si 1.86799 * 120.00124 * 344.11000 * 10 8 7 13 13 H 1.48497 * 109.47403 * 87.09562 * 12 10 8 14 14 H 1.48495 * 109.46960 * 207.10018 * 12 10 8 15 15 H 1.48503 * 109.46821 * 327.09784 * 12 10 8 16 16 C 1.41152 * 119.99921 * 120.04425 * 7 6 5 17 17 C 1.43205 * 119.99525 * 185.22453 * 16 7 6 18 18 N 7.13954 * 168.69981 * 222.84014 * 2 1 3 19 19 C 1.43198 * 120.00173 * 5.22360 * 16 7 6 20 20 N 7.28177 * 145.98941 * 314.37684 * 2 1 3 21 21 C 1.39774 * 118.32453 * 0.51729 * 5 4 3 22 22 F 1.35100 * 120.42649 * 179.77841 * 21 5 4 23 23 C 1.37925 * 119.15607 * 359.50144 * 21 5 4 24 24 N 1.32133 * 120.88027 * 0.23484 * 23 21 5 25 25 H 1.09005 * 109.47146 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46608 * 299.99575 * 1 2 3 27 27 H 1.08997 * 109.47385 * 60.00034 * 1 2 3 28 28 H 1.07996 * 120.47413 * 359.97438 * 4 3 2 29 29 H 0.97001 * 119.99843 * 176.56388 * 6 5 4 30 30 H 0.96995 * 120.00287 * 180.02562 * 11 10 8 31 31 H 1.07994 * 119.56277 * 180.25395 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 3.4302 1.2728 -0.0005 5 6 4.0494 2.5189 -0.0069 6 7 5.4397 2.6264 -0.0137 7 6 6.2218 1.4875 0.0574 8 6 6.1176 0.6404 1.1543 9 1 6.3500 -0.4092 1.0501 10 6 5.7091 1.1507 2.4019 11 7 5.3131 0.3377 3.3404 12 14 5.7347 2.9927 2.7113 13 1 4.4524 3.5887 2.2577 14 1 5.9132 3.2483 4.1631 15 1 6.8589 3.6054 1.9588 16 6 7.1256 1.1858 -0.9840 17 6 7.8530 -0.0475 -0.9658 18 7 8.4302 -1.0258 -0.9512 19 6 7.3149 2.1131 -2.0587 20 7 7.4651 2.8486 -2.9112 21 6 3.2426 3.6603 -0.0014 22 9 3.7990 4.8915 -0.0027 23 6 1.8711 3.5138 -0.0004 24 7 1.3173 2.3142 0.0000 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 4.0200 0.3681 -0.0005 29 1 5.8584 3.4997 -0.0684 30 1 5.0314 0.6891 4.1995 31 1 1.2416 4.3913 -0.0004 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169084163.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:45 Heat of formation + Delta-G solvation = 17.249419 kcal Electronic energy + Delta-G solvation = -22127.702618 eV Core-core repulsion = 18517.491046 eV Total energy + Delta-G solvation = -3610.211572 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.076 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.62297 -40.46140 -38.53812 -37.12637 -35.47151 -34.86158 -34.17387 -31.90039 -30.38349 -29.11551 -27.47219 -26.99146 -23.74532 -22.62601 -21.28500 -19.42239 -18.48612 -17.90559 -17.36353 -17.17737 -16.49737 -15.91199 -15.68399 -15.28668 -15.25088 -14.54495 -13.90909 -13.48913 -13.37425 -13.26729 -12.92932 -12.85916 -12.65906 -12.35191 -12.18526 -11.81365 -11.73718 -11.72339 -11.65449 -11.38448 -11.09160 -10.95126 -10.75741 -10.50836 -9.95422 -9.57393 -8.65656 -8.21873 -7.92345 -7.53125 -5.55154 1.24931 1.38527 1.92743 2.61954 2.71598 2.76377 3.09955 3.31157 3.50835 3.72892 3.86345 3.93900 4.07976 4.21065 4.28816 4.47129 5.00147 5.06396 5.23545 5.32805 5.35737 5.39618 5.64404 5.67561 5.82746 6.00073 6.25357 6.33808 6.35828 6.85037 7.05414 7.33111 7.40966 7.51120 7.69252 7.97508 7.98551 8.79638 9.01678 9.02944 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.012682 B = 0.007293 C = 0.007256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.323390 B = 3838.125404 C = 3858.039639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.300 6.300 3 C 0.342 3.658 4 C -0.212 4.212 5 C 0.258 3.742 6 N -0.673 5.673 7 C 0.329 3.671 8 C -0.351 4.351 9 H 0.127 0.873 10 C 0.076 3.924 11 N -0.715 5.715 12 Si 0.912 3.088 13 H -0.249 1.249 14 H -0.278 1.278 15 H -0.247 1.247 16 C -0.293 4.293 17 C 0.322 3.678 18 N -0.521 5.521 19 C 0.305 3.695 20 N -0.526 5.526 21 C -0.055 4.055 22 F -0.137 7.137 23 C 0.141 3.859 24 N -0.555 5.555 25 H 0.093 0.907 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.167 0.833 29 H 0.409 0.591 30 H 0.307 0.693 31 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.204 4.771 3.458 12.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.207 6.207 3 C 0.164 3.836 4 C -0.237 4.237 5 C 0.147 3.853 6 N -0.299 5.299 7 C 0.228 3.772 8 C -0.378 4.378 9 H 0.145 0.855 10 C -0.157 4.157 11 N -0.332 5.332 12 Si 0.735 3.265 13 H -0.173 1.173 14 H -0.205 1.205 15 H -0.170 1.170 16 C -0.311 4.311 17 C 0.014 3.986 18 N -0.203 5.203 19 C -0.002 4.002 20 N -0.208 5.208 21 C -0.082 4.082 22 F -0.116 7.116 23 C -0.015 4.015 24 N -0.281 5.281 25 H 0.111 0.889 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.184 0.816 29 H 0.248 0.752 30 H 0.119 0.881 31 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -10.891 3.783 2.435 11.784 hybrid contribution 0.613 1.516 0.683 1.772 sum -10.278 5.298 3.118 11.976 Atomic orbital electron populations 1.22825 0.77639 1.02673 1.02247 1.86287 1.22458 1.24212 1.87701 1.19423 0.88640 0.84420 0.91103 1.20673 0.92190 0.98176 1.12667 1.17587 0.83523 0.92349 0.91829 1.41997 1.01965 1.09513 1.76430 1.16838 0.87061 0.82063 0.91283 1.20113 1.27735 0.99474 0.90479 0.85532 1.26673 0.90552 1.02958 0.95476 1.69391 1.18806 1.40016 1.05019 0.86185 0.82145 0.79263 0.78860 1.17330 1.20466 1.17040 1.12728 1.20217 0.95655 1.02493 1.24559 0.90957 0.91271 0.91832 1.81081 1.14918 1.13309 1.10954 1.25160 0.91520 0.92166 0.91387 1.81089 1.13988 1.12916 1.12777 1.18020 0.92447 0.79336 1.18420 1.91442 1.85609 1.39327 1.95219 1.22041 0.89889 0.94922 0.94660 1.67337 1.39699 0.97801 1.23303 0.88869 0.92440 0.92433 0.81569 0.75199 0.88128 0.81628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.47 10.38 101.05 1.05 1.52 16 2 O -0.30 -4.64 10.48 -18.87 -0.20 -4.84 16 3 C 0.34 5.65 7.48 -17.19 -0.13 5.52 16 4 C -0.21 -3.73 8.71 -39.09 -0.34 -4.07 16 5 C 0.26 4.48 4.56 -83.48 -0.38 4.10 16 6 N -0.67 -12.09 2.27 -7.99 -0.02 -12.11 16 7 C 0.33 6.41 4.53 -83.55 -0.38 6.04 16 8 C -0.35 -7.09 7.09 -38.32 -0.27 -7.36 16 9 H 0.13 2.79 7.33 -52.49 -0.38 2.40 16 10 C 0.08 1.48 5.14 -17.20 -0.09 1.39 16 11 N -0.72 -14.22 13.90 55.60 0.77 -13.45 16 12 Si 0.91 15.77 24.49 -169.99 -4.16 11.61 16 13 H -0.25 -4.24 5.45 56.52 0.31 -3.93 16 14 H -0.28 -4.76 7.11 56.52 0.40 -4.36 16 15 H -0.25 -4.25 6.96 56.52 0.39 -3.86 16 16 C -0.29 -6.10 5.88 -104.94 -0.62 -6.72 16 17 C 0.32 7.18 13.97 -22.47 -0.31 6.87 16 18 N -0.52 -12.21 18.54 41.83 0.78 -11.44 16 19 C 0.31 6.58 14.80 -22.48 -0.33 6.24 16 20 N -0.53 -11.85 18.54 41.83 0.78 -11.08 16 21 C -0.06 -0.88 6.32 -39.12 -0.25 -1.13 16 22 F -0.14 -2.15 16.76 2.25 0.04 -2.11 16 23 C 0.14 2.00 11.15 -17.54 -0.20 1.81 16 24 N -0.56 -8.48 9.21 -13.37 -0.12 -8.61 16 25 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 27 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 28 H 0.17 3.10 6.16 -52.49 -0.32 2.78 16 29 H 0.41 7.03 7.59 -40.82 -0.31 6.72 16 30 H 0.31 5.45 8.28 -40.82 -0.34 5.11 16 31 H 0.17 1.77 8.06 -52.49 -0.42 1.34 16 LS Contribution 295.51 15.07 4.45 4.45 Total: -1.00 -24.51 295.51 -1.87 -26.39 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -1.94 Total: 6.98 kcal Atomic # 6 Polarization: 16.45 SS G_CDS: -2.25 Total: 14.21 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: 2.18 Total: -56.68 kcal Atomic # 8 Polarization: -4.64 SS G_CDS: -0.20 Total: -4.84 kcal Atomic # 9 Polarization: -2.15 SS G_CDS: 0.04 Total: -2.11 kcal Atomic # 14 Polarization: 15.77 SS G_CDS: -4.16 Total: 11.61 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -24.51 -1.87 -26.39 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169084163.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.637 kcal (2) G-P(sol) polarization free energy of solvation -24.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds