Wall clock time and date at job start Tue Mar 31 2020 06:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35722 * 116.99871 * 2 1 4 4 C 1.38652 * 119.62526 * 180.02562 * 3 2 1 5 5 C 1.39144 * 119.04654 * 179.70007 * 4 3 2 6 6 N 1.39450 * 120.83950 * 180.28884 * 5 4 3 7 7 C 1.38338 * 119.99909 * 356.57383 * 6 5 4 8 8 C 1.38983 * 119.99829 * 300.04503 * 7 6 5 9 9 H 1.08002 * 120.00210 * 152.74090 * 8 7 6 10 10 C 1.40846 * 119.99864 * 332.73558 * 8 7 6 11 11 N 1.30332 * 119.99944 * 164.10406 * 10 8 7 12 12 Si 1.86799 * 120.00124 * 344.11000 * 10 8 7 13 13 H 1.48497 * 109.47403 * 87.09562 * 12 10 8 14 14 H 1.48495 * 109.46960 * 207.10018 * 12 10 8 15 15 H 1.48503 * 109.46821 * 327.09784 * 12 10 8 16 16 C 1.41152 * 119.99921 * 120.04425 * 7 6 5 17 17 C 1.43205 * 119.99525 * 185.22453 * 16 7 6 18 18 N 7.13954 * 168.69981 * 222.84014 * 2 1 3 19 19 C 1.43198 * 120.00173 * 5.22360 * 16 7 6 20 20 N 7.28177 * 145.98941 * 314.37684 * 2 1 3 21 21 C 1.39774 * 118.32453 * 0.51729 * 5 4 3 22 22 F 1.35100 * 120.42649 * 179.77841 * 21 5 4 23 23 C 1.37925 * 119.15607 * 359.50144 * 21 5 4 24 24 N 1.32133 * 120.88027 * 0.23484 * 23 21 5 25 25 H 1.09005 * 109.47146 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46608 * 299.99575 * 1 2 3 27 27 H 1.08997 * 109.47385 * 60.00034 * 1 2 3 28 28 H 1.07996 * 120.47413 * 359.97438 * 4 3 2 29 29 H 0.97001 * 119.99843 * 176.56388 * 6 5 4 30 30 H 0.96995 * 120.00287 * 180.02562 * 11 10 8 31 31 H 1.07994 * 119.56277 * 180.25395 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 3.4302 1.2728 -0.0005 5 6 4.0494 2.5189 -0.0069 6 7 5.4397 2.6264 -0.0137 7 6 6.2218 1.4875 0.0574 8 6 6.1176 0.6404 1.1543 9 1 6.3500 -0.4092 1.0501 10 6 5.7091 1.1507 2.4019 11 7 5.3131 0.3377 3.3404 12 14 5.7347 2.9927 2.7113 13 1 4.4524 3.5887 2.2577 14 1 5.9132 3.2483 4.1631 15 1 6.8589 3.6054 1.9588 16 6 7.1256 1.1858 -0.9840 17 6 7.8530 -0.0475 -0.9658 18 7 8.4302 -1.0258 -0.9512 19 6 7.3149 2.1131 -2.0587 20 7 7.4651 2.8486 -2.9112 21 6 3.2426 3.6603 -0.0014 22 9 3.7990 4.8915 -0.0027 23 6 1.8711 3.5138 -0.0004 24 7 1.3173 2.3142 0.0000 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 4.0200 0.3681 -0.0005 29 1 5.8584 3.4997 -0.0684 30 1 5.0314 0.6891 4.1995 31 1 1.2416 4.3913 -0.0004 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169084163.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:45 Heat of formation + Delta-G solvation = 1.773081 kcal Electronic energy + Delta-G solvation = -22128.373723 eV Core-core repulsion = 18517.491046 eV Total energy + Delta-G solvation = -3610.882676 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.076 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.83618 -41.71231 -39.90300 -38.42670 -37.14538 -36.62806 -35.70718 -33.37774 -31.62755 -30.48602 -29.10705 -27.98764 -25.05187 -23.89192 -22.78991 -20.96631 -19.81091 -19.37809 -18.76089 -18.43121 -18.00283 -17.15106 -17.03241 -16.54836 -16.46189 -15.70937 -15.19534 -14.91287 -14.83771 -14.54411 -14.48801 -14.43019 -14.11929 -13.77128 -13.59138 -13.47061 -13.42297 -13.20398 -12.94000 -12.81979 -12.68177 -12.40816 -12.01258 -11.87709 -11.37299 -10.80823 -10.20460 -9.46459 -9.44082 -8.96110 -7.22795 0.00991 0.03564 0.45143 1.19829 1.33345 1.39719 1.81003 1.90437 1.98948 2.16932 2.21612 2.45313 2.53039 2.65070 3.05968 3.29558 3.33105 3.67142 3.83532 4.04122 4.30829 4.43096 4.51341 4.53745 4.60859 4.68513 4.82422 4.98488 5.10028 5.38472 5.48656 5.70127 5.96760 6.21236 6.26905 6.44643 6.76333 7.07511 7.25884 7.54026 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.012682 B = 0.007293 C = 0.007256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.323390 B = 3838.125404 C = 3858.039639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.317 6.317 3 C 0.339 3.661 4 C -0.230 4.230 5 C 0.247 3.753 6 N -0.674 5.674 7 C 0.343 3.657 8 C -0.349 4.349 9 H 0.103 0.897 10 C 0.059 3.941 11 N -0.733 5.733 12 Si 0.945 3.055 13 H -0.241 1.241 14 H -0.271 1.271 15 H -0.245 1.245 16 C -0.303 4.303 17 C 0.328 3.672 18 N -0.549 5.549 19 C 0.315 3.685 20 N -0.544 5.544 21 C -0.062 4.062 22 F -0.134 7.134 23 C 0.156 3.844 24 N -0.550 5.550 25 H 0.120 0.880 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.148 0.852 29 H 0.414 0.586 30 H 0.319 0.681 31 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.983 6.293 4.086 14.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.224 6.224 3 C 0.162 3.838 4 C -0.255 4.255 5 C 0.137 3.863 6 N -0.302 5.302 7 C 0.241 3.759 8 C -0.376 4.376 9 H 0.120 0.880 10 C -0.173 4.173 11 N -0.351 5.351 12 Si 0.766 3.234 13 H -0.165 1.165 14 H -0.197 1.197 15 H -0.169 1.169 16 C -0.321 4.321 17 C 0.020 3.980 18 N -0.231 5.231 19 C 0.008 3.992 20 N -0.227 5.227 21 C -0.088 4.088 22 F -0.113 7.113 23 C -0.001 4.001 24 N -0.277 5.277 25 H 0.138 0.862 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.165 0.835 29 H 0.253 0.747 30 H 0.131 0.869 31 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -12.694 5.290 3.063 14.089 hybrid contribution 1.019 0.969 0.554 1.511 sum -11.676 6.259 3.617 13.732 Atomic orbital electron populations 1.23126 0.75384 1.04690 1.02699 1.86274 1.24771 1.23976 1.87374 1.19504 0.88449 0.85194 0.90661 1.20582 0.92863 0.97720 1.14329 1.17743 0.83130 0.92972 0.92427 1.41899 1.02266 1.09023 1.76975 1.16595 0.86519 0.82507 0.90306 1.20039 1.27585 0.98536 0.91444 0.87955 1.27128 0.89984 1.05354 0.94791 1.69373 1.18607 1.41384 1.05716 0.85691 0.82494 0.76063 0.79165 1.16499 1.19668 1.16877 1.12751 1.21053 0.95279 1.03047 1.24793 0.90595 0.91363 0.91209 1.81064 1.16069 1.14146 1.11867 1.25147 0.91032 0.91879 0.91130 1.81086 1.14764 1.13540 1.13263 1.18141 0.92938 0.78930 1.18831 1.91452 1.85681 1.38961 1.95245 1.22705 0.89639 0.95683 0.92083 1.67474 1.39273 0.97828 1.23094 0.86230 0.92020 0.91831 0.83464 0.74660 0.86867 0.77586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.72 10.38 113.37 1.18 1.90 16 2 O -0.32 -9.46 10.48 -90.44 -0.95 -10.41 16 3 C 0.34 10.78 7.48 84.72 0.63 11.41 16 4 C -0.23 -7.98 8.71 22.59 0.20 -7.78 16 5 C 0.25 8.27 4.56 38.52 0.18 8.44 16 6 N -0.67 -23.60 2.27 -179.18 -0.41 -24.01 16 7 C 0.34 13.35 4.53 39.01 0.18 13.53 16 8 C -0.35 -14.22 7.09 23.09 0.16 -14.06 16 9 H 0.10 4.66 7.33 -2.91 -0.02 4.64 16 10 C 0.06 2.26 5.14 85.55 0.44 2.70 16 11 N -0.73 -28.73 13.90 21.98 0.31 -28.42 16 12 Si 0.95 30.65 24.49 68.60 1.68 32.33 16 13 H -0.24 -7.52 5.45 99.48 0.54 -6.98 16 14 H -0.27 -8.46 7.11 99.48 0.71 -7.75 16 15 H -0.25 -7.90 6.96 99.48 0.69 -7.21 16 16 C -0.30 -12.68 5.88 -20.07 -0.12 -12.80 16 17 C 0.33 14.82 13.97 88.33 1.23 16.06 16 18 N -0.55 -26.18 18.54 19.00 0.35 -25.83 16 19 C 0.31 13.49 14.80 88.33 1.31 14.80 16 20 N -0.54 -24.25 18.54 19.00 0.35 -23.89 16 21 C -0.06 -1.81 6.32 22.57 0.14 -1.67 16 22 F -0.13 -3.83 16.76 44.97 0.75 -3.08 16 23 C 0.16 3.88 11.15 84.57 0.94 4.82 16 24 N -0.55 -15.37 9.21 -309.02 -2.85 -18.21 16 25 H 0.12 1.75 8.14 -2.38 -0.02 1.74 16 26 H 0.06 1.20 8.10 -2.38 -0.02 1.18 16 27 H 0.06 1.21 8.10 -2.39 -0.02 1.19 16 28 H 0.15 5.64 6.16 -2.91 -0.02 5.62 16 29 H 0.41 13.65 7.59 -92.71 -0.70 12.94 16 30 H 0.32 10.96 8.28 -92.71 -0.77 10.19 16 31 H 0.21 3.39 8.06 -2.91 -0.02 3.36 16 Total: -1.00 -51.32 295.51 6.07 -45.25 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 0.35 Total: 18.92 kcal Atomic # 6 Polarization: 30.88 SS G_CDS: 6.47 Total: 37.35 kcal Atomic # 7 Polarization: -118.12 SS G_CDS: -2.24 Total: -120.36 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: -0.95 Total: -10.41 kcal Atomic # 9 Polarization: -3.83 SS G_CDS: 0.75 Total: -3.08 kcal Atomic # 14 Polarization: 30.65 SS G_CDS: 1.68 Total: 32.33 kcal Total: -51.32 6.07 -45.25 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169084163.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.027 kcal (2) G-P(sol) polarization free energy of solvation -51.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds