Wall clock time and date at job start Tue Mar 31 2020 05:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36863 * 119.99673 * 2 1 4 4 H 1.07997 * 120.00129 * 157.44069 * 3 2 1 5 5 C 1.39045 * 119.99945 * 337.44462 * 3 2 1 6 6 N 1.31367 * 120.00225 * 356.70251 * 5 3 2 7 7 Si 1.86802 * 119.99900 * 176.70360 * 5 3 2 8 8 H 1.48496 * 109.47207 * 59.99772 * 7 5 3 9 9 H 1.48499 * 109.47292 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.46952 * 299.99683 * 7 5 3 11 11 C 1.34771 * 120.00465 * 180.02562 * 2 1 3 12 12 O 1.21639 * 120.00398 * 185.42687 * 11 2 1 13 13 C 1.47414 * 119.99954 * 5.43124 * 11 2 1 14 14 C 1.40430 * 120.43564 * 40.88968 * 13 11 2 15 15 C 1.36816 * 118.52199 * 179.76967 * 14 13 11 16 16 C 1.39892 * 119.33728 * 0.49511 * 15 14 13 17 17 C 1.47377 * 119.58007 * 179.76754 * 16 15 14 18 18 C 1.35100 * 125.27769 * 179.70835 * 17 16 15 19 19 C 1.37677 * 114.70429 * 180.02562 * 18 17 16 20 20 C 1.33835 * 115.09312 * 359.97438 * 19 18 17 21 21 S 1.75866 * 109.75829 * 0.02562 * 20 19 18 22 22 N 1.33076 * 120.83501 * 359.48864 * 16 15 14 23 23 C 1.31492 * 121.60183 * 0.26156 * 22 16 15 24 24 H 1.09003 * 109.46843 * 205.49633 * 1 2 3 25 25 H 1.09001 * 109.47642 * 325.49514 * 1 2 3 26 26 H 1.09000 * 109.47633 * 85.50184 * 1 2 3 27 27 H 0.97001 * 120.00412 * 180.02562 * 6 5 3 28 28 H 1.07995 * 120.73485 * 0.02562 * 14 13 11 29 29 H 1.08007 * 120.32695 * 180.26472 * 15 14 13 30 30 H 1.08002 * 122.64995 * 0.04012 * 18 17 16 31 31 H 1.08003 * 122.45837 * 179.97438 * 19 18 17 32 32 H 1.08000 * 125.12306 * 180.02562 * 20 19 18 33 33 H 1.07998 * 119.71798 * 180.02562 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1492 1.1853 0.0000 4 1 3.1672 1.2212 0.3588 5 6 1.5337 2.3434 -0.4619 6 7 0.3187 2.2883 -0.9584 7 14 2.4345 3.9776 -0.3765 8 1 3.6861 3.8951 -1.1713 9 1 1.5680 5.0499 -0.9284 10 1 2.7657 4.2870 1.0377 11 6 2.1389 -1.1671 -0.0005 12 8 3.3512 -1.1695 0.0991 13 6 1.4069 -2.4409 -0.1219 14 6 0.3277 -2.5590 -1.0126 15 6 -0.3209 -3.7607 -1.0973 16 6 0.1001 -4.8250 -0.2929 17 6 -0.5980 -6.1203 -0.3761 18 6 -0.2860 -7.2222 0.3405 19 6 -1.0829 -8.3165 0.0895 20 6 -2.0426 -8.1225 -0.8229 21 16 -1.9665 -6.4714 -1.4238 22 7 1.1263 -4.6842 0.5425 23 6 1.7776 -3.5468 0.6484 24 1 -0.3633 -0.9276 0.4424 25 1 -0.3634 0.8469 0.5821 26 1 -0.3634 0.0806 -1.0245 27 1 -0.1106 3.0961 -1.2809 28 1 0.0193 -1.7212 -1.6203 29 1 -1.1519 -3.8853 -1.7758 30 1 0.5245 -7.2431 1.0541 31 1 -0.9437 -9.2624 0.5920 32 1 -2.7564 -8.8675 -1.1420 33 1 2.6065 -3.4665 1.3360 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196784869.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:53 Heat of formation + Delta-G solvation = 50.492594 kcal Electronic energy + Delta-G solvation = -19316.473596 eV Core-core repulsion = 16241.623981 eV Total energy + Delta-G solvation = -3074.849615 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.17315 -38.29390 -37.44732 -34.85187 -32.74639 -32.02399 -31.42328 -28.66047 -26.48638 -25.36681 -24.34919 -23.24142 -22.54910 -19.71571 -19.16655 -18.06842 -17.13499 -16.48349 -16.02635 -15.59873 -15.05648 -14.92435 -14.32304 -14.04129 -13.84245 -13.63295 -13.06965 -12.88852 -12.76889 -12.52229 -12.22895 -12.03245 -11.71629 -11.49902 -11.22639 -10.95429 -10.92787 -10.52028 -10.45810 -9.61285 -9.56356 -9.45077 -9.12935 -8.61946 -8.58973 -8.03793 -7.85877 -6.45700 -4.00576 0.30417 1.41783 1.47361 1.56305 1.83860 2.69826 3.12645 3.17501 3.21445 3.71248 4.00711 4.23697 4.29931 4.69619 4.82488 4.91176 5.00593 5.16768 5.27902 5.35279 5.40729 5.50693 5.74187 5.91055 5.99049 6.19930 6.24154 6.25948 6.39137 6.49221 6.80130 6.84217 7.14197 7.41292 7.94710 8.10232 8.33568 9.02501 9.24076 9.81237 10.55170 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.040192 B = 0.003488 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.488849 B = 8024.698994 C = 8581.153494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.428 5.428 3 C -0.303 4.303 4 H 0.103 0.897 5 C 0.031 3.969 6 N -0.879 5.879 7 Si 0.934 3.066 8 H -0.271 1.271 9 H -0.282 1.282 10 H -0.272 1.272 11 C 0.475 3.525 12 O -0.585 6.585 13 C -0.136 4.136 14 C -0.048 4.048 15 C -0.166 4.166 16 C 0.183 3.817 17 C -0.138 4.138 18 C -0.103 4.103 19 C -0.136 4.136 20 C -0.218 4.218 21 S 0.127 5.873 22 N -0.475 5.475 23 C 0.141 3.859 24 H 0.027 0.973 25 H 0.075 0.925 26 H 0.062 0.938 27 H 0.271 0.729 28 H 0.147 0.853 29 H 0.132 0.868 30 H 0.150 0.850 31 H 0.141 0.859 32 H 0.165 0.835 33 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.361 -15.049 -0.578 17.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.145 5.145 3 C -0.431 4.431 4 H 0.121 0.879 5 C -0.173 4.173 6 N -0.518 5.518 7 Si 0.760 3.240 8 H -0.196 1.196 9 H -0.208 1.208 10 H -0.197 1.197 11 C 0.263 3.737 12 O -0.471 6.471 13 C -0.142 4.142 14 C -0.074 4.074 15 C -0.187 4.187 16 C 0.045 3.955 17 C -0.256 4.256 18 C -0.135 4.135 19 C -0.166 4.166 20 C -0.354 4.354 21 S 0.391 5.609 22 N -0.184 5.184 23 C -0.018 4.018 24 H 0.045 0.955 25 H 0.094 0.906 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.165 0.835 29 H 0.149 0.851 30 H 0.167 0.833 31 H 0.159 0.841 32 H 0.183 0.817 33 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -8.527 -14.728 -1.165 17.058 hybrid contribution 0.650 0.743 0.407 1.067 sum -7.877 -13.985 -0.758 16.069 Atomic orbital electron populations 1.21791 0.80742 0.98831 1.02085 1.43534 1.05849 1.04698 1.60393 1.19736 0.99392 0.83989 1.39935 0.87883 1.25450 0.96182 1.00264 0.95356 1.69968 1.13017 1.29772 1.39080 0.85862 0.79128 0.80016 0.78954 1.19580 1.20775 1.19683 1.17649 0.87123 0.82832 0.86084 1.90643 1.13312 1.86636 1.56553 1.21436 0.96732 0.97625 0.98449 1.21669 0.92433 0.97457 0.95798 1.21628 1.02124 0.93570 1.01345 1.18842 0.92559 0.90619 0.93446 1.22647 1.01846 0.96707 1.04371 1.20462 1.01209 0.91061 1.00742 1.20123 0.96369 1.00235 0.99903 1.25843 1.05305 0.99880 1.04351 1.84130 1.28816 1.06590 1.41347 1.67696 1.06499 1.25401 1.18824 1.22846 0.96762 0.86280 0.95947 0.95469 0.90624 0.91990 0.91852 0.83527 0.85068 0.83253 0.84086 0.81730 0.81700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.39 7.18 59.85 0.43 2.82 16 2 N -0.43 -10.83 3.02 -123.43 -0.37 -11.21 16 3 C -0.30 -8.22 9.34 -15.01 -0.14 -8.36 16 4 H 0.10 2.92 7.34 -52.49 -0.39 2.53 16 5 C 0.03 0.80 5.28 -17.45 -0.09 0.70 16 6 N -0.88 -22.29 10.21 55.50 0.57 -21.72 16 7 Si 0.93 20.12 29.55 -169.99 -5.02 15.10 16 8 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 9 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 10 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 11 C 0.47 11.72 7.25 -12.53 -0.09 11.62 16 12 O -0.59 -16.32 16.63 5.24 0.09 -16.23 16 13 C -0.14 -2.75 4.97 -104.76 -0.52 -3.27 16 14 C -0.05 -0.83 7.76 -39.27 -0.30 -1.14 16 15 C -0.17 -2.54 9.56 -39.48 -0.38 -2.92 16 16 C 0.18 2.93 6.74 -82.99 -0.56 2.37 16 17 C -0.14 -1.87 6.37 -36.98 -0.24 -2.11 16 18 C -0.10 -1.26 9.83 -40.90 -0.40 -1.67 16 19 C -0.14 -1.33 10.16 -41.33 -0.42 -1.75 16 20 C -0.22 -1.98 11.23 29.19 0.33 -1.65 16 21 S 0.13 1.35 22.20 -107.50 -2.39 -1.03 16 22 N -0.47 -8.25 9.92 -9.52 -0.09 -8.34 16 23 C 0.14 2.62 10.82 -17.12 -0.19 2.43 16 24 H 0.03 0.52 5.98 -51.93 -0.31 0.21 16 25 H 0.08 1.75 6.98 -51.93 -0.36 1.39 16 26 H 0.06 1.36 6.52 -51.93 -0.34 1.02 16 27 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 28 H 0.15 2.52 6.17 -52.49 -0.32 2.20 16 29 H 0.13 1.65 7.24 -52.48 -0.38 1.27 16 30 H 0.15 1.82 7.97 -52.49 -0.42 1.40 16 31 H 0.14 1.03 8.06 -52.48 -0.42 0.60 16 32 H 0.17 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.17 2.91 8.06 -52.49 -0.42 2.49 16 LS Contribution 300.02 15.07 4.52 4.52 Total: -1.00 -30.11 300.02 -8.19 -38.31 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -2.92 Total: 3.53 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -2.57 Total: -2.92 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: 0.10 Total: -41.27 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: 0.09 Total: -16.23 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Atomic # 16 Polarization: 1.35 SS G_CDS: -2.39 Total: -1.03 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.11 -8.19 -38.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196784869.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.800 kcal (2) G-P(sol) polarization free energy of solvation -30.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds