Wall clock time and date at job start Tue Mar 31 2020 05:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36863 * 119.99673 * 2 1 4 4 H 1.07997 * 120.00129 * 157.44069 * 3 2 1 5 5 C 1.39045 * 119.99945 * 337.44462 * 3 2 1 6 6 N 1.31367 * 120.00225 * 356.70251 * 5 3 2 7 7 Si 1.86802 * 119.99900 * 176.70360 * 5 3 2 8 8 H 1.48496 * 109.47207 * 59.99772 * 7 5 3 9 9 H 1.48499 * 109.47292 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.46952 * 299.99683 * 7 5 3 11 11 C 1.34771 * 120.00465 * 180.02562 * 2 1 3 12 12 O 1.21639 * 120.00398 * 185.42687 * 11 2 1 13 13 C 1.47414 * 119.99954 * 5.43124 * 11 2 1 14 14 C 1.40430 * 120.43564 * 40.88968 * 13 11 2 15 15 C 1.36816 * 118.52199 * 179.76967 * 14 13 11 16 16 C 1.39892 * 119.33728 * 0.49511 * 15 14 13 17 17 C 1.47377 * 119.58007 * 179.76754 * 16 15 14 18 18 C 1.35100 * 125.27769 * 179.70835 * 17 16 15 19 19 C 1.37677 * 114.70429 * 180.02562 * 18 17 16 20 20 C 1.33835 * 115.09312 * 359.97438 * 19 18 17 21 21 S 1.75866 * 109.75829 * 0.02562 * 20 19 18 22 22 N 1.33076 * 120.83501 * 359.48864 * 16 15 14 23 23 C 1.31492 * 121.60183 * 0.26156 * 22 16 15 24 24 H 1.09003 * 109.46843 * 205.49633 * 1 2 3 25 25 H 1.09001 * 109.47642 * 325.49514 * 1 2 3 26 26 H 1.09000 * 109.47633 * 85.50184 * 1 2 3 27 27 H 0.97001 * 120.00412 * 180.02562 * 6 5 3 28 28 H 1.07995 * 120.73485 * 0.02562 * 14 13 11 29 29 H 1.08007 * 120.32695 * 180.26472 * 15 14 13 30 30 H 1.08002 * 122.64995 * 0.04012 * 18 17 16 31 31 H 1.08003 * 122.45837 * 179.97438 * 19 18 17 32 32 H 1.08000 * 125.12306 * 180.02562 * 20 19 18 33 33 H 1.07998 * 119.71798 * 180.02562 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1492 1.1853 0.0000 4 1 3.1672 1.2212 0.3588 5 6 1.5337 2.3434 -0.4619 6 7 0.3187 2.2883 -0.9584 7 14 2.4345 3.9776 -0.3765 8 1 3.6861 3.8951 -1.1713 9 1 1.5680 5.0499 -0.9284 10 1 2.7657 4.2870 1.0377 11 6 2.1389 -1.1671 -0.0005 12 8 3.3512 -1.1695 0.0991 13 6 1.4069 -2.4409 -0.1219 14 6 0.3277 -2.5590 -1.0126 15 6 -0.3209 -3.7607 -1.0973 16 6 0.1001 -4.8250 -0.2929 17 6 -0.5980 -6.1203 -0.3761 18 6 -0.2860 -7.2222 0.3405 19 6 -1.0829 -8.3165 0.0895 20 6 -2.0426 -8.1225 -0.8229 21 16 -1.9665 -6.4714 -1.4238 22 7 1.1263 -4.6842 0.5425 23 6 1.7776 -3.5468 0.6484 24 1 -0.3633 -0.9276 0.4424 25 1 -0.3634 0.8469 0.5821 26 1 -0.3634 0.0806 -1.0245 27 1 -0.1106 3.0961 -1.2809 28 1 0.0193 -1.7212 -1.6203 29 1 -1.1519 -3.8853 -1.7758 30 1 0.5245 -7.2431 1.0541 31 1 -0.9437 -9.2624 0.5920 32 1 -2.7564 -8.8675 -1.1420 33 1 2.6065 -3.4665 1.3360 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001196784869.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:53 Heat of formation + Delta-G solvation = 32.752726 kcal Electronic energy + Delta-G solvation = -19317.242854 eV Core-core repulsion = 16241.623981 eV Total energy + Delta-G solvation = -3075.618873 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.63944 -39.96155 -38.44040 -36.81892 -34.32933 -33.31535 -33.15847 -29.80020 -28.32882 -26.91296 -25.69639 -24.68810 -23.70865 -21.43714 -20.10648 -19.18877 -18.97673 -18.23071 -17.31788 -16.98606 -16.64495 -16.06750 -16.01703 -15.64045 -15.28241 -15.11208 -14.50800 -14.27527 -13.84282 -13.71870 -13.50307 -13.31786 -13.24089 -13.06108 -13.02891 -12.70280 -12.48971 -12.14532 -11.76495 -11.10381 -10.99957 -10.90491 -10.74184 -10.41930 -9.83559 -9.42896 -9.16722 -8.39514 -6.05608 -0.82504 0.15517 0.38582 0.55388 1.02222 1.39128 1.40774 1.51115 1.76031 2.03953 2.22551 2.74697 2.90186 3.05698 3.16379 3.53737 3.79268 3.86395 3.95234 4.19124 4.30747 4.50492 4.52437 4.58029 4.72124 4.91428 4.99706 5.03919 5.20430 5.29097 5.33370 5.37727 5.51681 5.52757 5.98998 6.38040 6.72782 7.04987 7.31181 7.87695 8.59897 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.040192 B = 0.003488 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.488849 B = 8024.698994 C = 8581.153494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.443 5.443 3 C -0.348 4.348 4 H 0.077 0.923 5 C 0.003 3.997 6 N -0.889 5.889 7 Si 0.995 3.005 8 H -0.275 1.275 9 H -0.266 1.266 10 H -0.268 1.268 11 C 0.472 3.528 12 O -0.630 6.630 13 C -0.168 4.168 14 C -0.040 4.040 15 C -0.161 4.161 16 C 0.197 3.803 17 C -0.189 4.189 18 C -0.093 4.093 19 C -0.150 4.150 20 C -0.192 4.192 21 S 0.148 5.852 22 N -0.485 5.485 23 C 0.144 3.856 24 H 0.052 0.948 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.278 0.722 28 H 0.148 0.852 29 H 0.164 0.836 30 H 0.143 0.857 31 H 0.169 0.831 32 H 0.201 0.799 33 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.834 -17.119 -1.384 20.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.159 5.159 3 C -0.476 4.476 4 H 0.095 0.905 5 C -0.200 4.200 6 N -0.527 5.527 7 Si 0.818 3.182 8 H -0.201 1.201 9 H -0.190 1.190 10 H -0.193 1.193 11 C 0.261 3.739 12 O -0.520 6.520 13 C -0.174 4.174 14 C -0.066 4.066 15 C -0.181 4.181 16 C 0.059 3.941 17 C -0.306 4.306 18 C -0.126 4.126 19 C -0.179 4.179 20 C -0.328 4.328 21 S 0.412 5.588 22 N -0.195 5.195 23 C -0.015 4.015 24 H 0.070 0.930 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.166 0.834 29 H 0.181 0.819 30 H 0.160 0.840 31 H 0.187 0.813 32 H 0.218 0.782 33 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -11.041 -16.800 -1.974 20.200 hybrid contribution 1.269 1.066 0.628 1.772 sum -9.773 -15.734 -1.346 18.570 Atomic orbital electron populations 1.21683 0.78994 0.99345 1.01850 1.43718 1.06996 1.04490 1.60649 1.19697 0.99261 0.85775 1.42842 0.90512 1.26167 0.96914 1.02682 0.94242 1.70024 1.13431 1.30849 1.38408 0.84968 0.77939 0.76307 0.78977 1.20085 1.19004 1.19279 1.18299 0.86901 0.84134 0.84539 1.90581 1.15472 1.87673 1.58242 1.21044 0.98862 0.95866 1.01597 1.21669 0.91514 0.98499 0.94883 1.21864 1.02489 0.92248 1.01476 1.19365 0.91219 0.91930 0.91575 1.22672 1.04363 0.96075 1.07494 1.20695 1.00807 0.91563 0.99546 1.20346 0.96255 1.00610 1.00702 1.26372 1.04649 0.99430 1.02365 1.84054 1.26829 1.07686 1.40193 1.67783 1.07401 1.24486 1.19826 1.22800 0.96730 0.86275 0.95676 0.93008 0.92219 0.92097 0.91214 0.83397 0.81901 0.83961 0.81349 0.78210 0.81934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.54 7.18 127.77 0.92 6.46 16 2 N -0.44 -23.35 3.02 -662.67 -2.00 -25.35 16 3 C -0.35 -19.80 9.34 84.10 0.79 -19.02 16 4 H 0.08 4.65 7.34 -2.91 -0.02 4.63 16 5 C 0.00 0.14 5.28 84.96 0.45 0.59 16 6 N -0.89 -45.26 10.21 21.68 0.22 -45.04 16 7 Si 1.00 41.67 29.55 68.60 2.03 43.70 16 8 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 9 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 10 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 11 C 0.47 24.47 7.25 86.66 0.63 25.09 16 12 O -0.63 -37.37 16.63 -4.15 -0.07 -37.44 16 13 C -0.17 -6.98 4.97 -19.95 -0.10 -7.07 16 14 C -0.04 -1.38 7.76 22.47 0.17 -1.21 16 15 C -0.16 -4.66 9.56 22.34 0.21 -4.44 16 16 C 0.20 6.03 6.74 41.76 0.28 6.31 16 17 C -0.19 -4.68 6.37 23.95 0.15 -4.53 16 18 C -0.09 -2.05 9.83 21.41 0.21 -1.84 16 19 C -0.15 -2.33 10.16 21.14 0.21 -2.11 16 20 C -0.19 -2.56 11.23 66.82 0.75 -1.81 16 21 S 0.15 2.61 22.20 -56.49 -1.25 1.36 16 22 N -0.49 -16.78 9.92 -184.02 -1.83 -18.60 16 23 C 0.14 5.49 10.82 85.12 0.92 6.41 16 24 H 0.05 2.01 5.98 -2.39 -0.01 2.00 16 25 H 0.06 2.82 6.98 -2.39 -0.02 2.81 16 26 H 0.06 2.70 6.52 -2.39 -0.02 2.68 16 27 H 0.28 13.18 8.31 -92.71 -0.77 12.41 16 28 H 0.15 5.06 6.17 -2.91 -0.02 5.04 16 29 H 0.16 3.63 7.24 -2.91 -0.02 3.61 16 30 H 0.14 3.27 7.97 -2.91 -0.02 3.25 16 31 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 32 H 0.20 1.27 8.06 -2.91 -0.02 1.24 16 33 H 0.16 6.09 8.06 -2.91 -0.02 6.07 16 Total: -1.00 -67.89 300.02 3.85 -64.04 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: 1.15 Total: 14.50 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: 5.60 Total: 2.83 kcal Atomic # 7 Polarization: -85.38 SS G_CDS: -3.60 Total: -88.99 kcal Atomic # 8 Polarization: -37.37 SS G_CDS: -0.07 Total: -37.44 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Atomic # 16 Polarization: 2.61 SS G_CDS: -1.25 Total: 1.36 kcal Total: -67.89 3.85 -64.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196784869.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.795 kcal (2) G-P(sol) polarization free energy of solvation -67.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds