Wall clock time and date at job start Tue Mar 31 2020 05:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37858 * 119.93032 * 2 1 4 4 C 1.39722 * 119.85981 * 179.97438 * 3 2 1 5 5 C 1.47755 * 120.14068 * 179.97438 * 4 3 2 6 6 N 1.32879 * 120.25445 * 225.75042 * 5 4 3 7 7 C 1.31998 * 120.07823 * 179.97438 * 6 5 4 8 8 C 1.39198 * 120.59276 * 359.97438 * 7 6 5 9 9 N 1.31603 * 120.50652 * 0.02562 * 8 7 6 10 10 C 1.33969 * 119.90470 * 359.97438 * 9 8 7 11 11 C 1.40782 * 120.29616 * 179.97438 * 10 9 8 12 12 H 1.07994 * 120.00701 * 175.67509 * 11 10 9 13 13 C 1.40175 * 119.99613 * 355.67235 * 11 10 9 14 14 N 1.30691 * 119.99773 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00154 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.46787 * 90.00088 * 15 13 11 17 17 H 1.48494 * 109.47168 * 210.00453 * 15 13 11 18 18 H 1.48499 * 109.47042 * 329.99986 * 15 13 11 19 19 C 1.39720 * 119.71942 * 0.27774 * 4 3 2 20 20 C 1.37869 * 119.85995 * 359.46586 * 19 4 3 21 21 C 1.50699 * 119.93408 * 180.25283 * 20 19 4 22 22 C 1.38547 * 119.92817 * 180.02562 * 2 1 3 23 23 Cl 1.73606 * 119.86104 * 0.02562 * 22 2 1 24 24 H 1.08993 * 109.46823 * 90.00084 * 1 2 3 25 25 H 1.09003 * 109.46907 * 210.00467 * 1 2 3 26 26 H 1.08997 * 109.47210 * 330.00141 * 1 2 3 27 27 H 1.08003 * 120.07125 * 359.97438 * 3 2 1 28 28 H 1.07998 * 119.70407 * 180.02562 * 7 6 5 29 29 H 1.07997 * 119.75002 * 180.27857 * 8 7 6 30 30 H 0.96999 * 119.99766 * 180.02562 * 14 13 11 31 31 H 1.08005 * 120.06990 * 179.71743 * 19 4 3 32 32 H 1.08999 * 109.46875 * 270.27860 * 21 20 19 33 33 H 1.09002 * 109.46870 * 30.28228 * 21 20 19 34 34 H 1.08994 * 109.47028 * 150.27942 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1949 1.1947 0.0000 4 6 3.5921 1.1930 0.0005 5 6 4.3356 2.4699 0.0000 6 7 5.3649 2.6449 -0.8219 7 6 6.0264 3.7872 -0.8199 8 6 5.6561 4.8186 0.0384 9 7 4.6404 4.6703 0.8619 10 6 3.9550 3.5193 0.8767 11 6 2.8674 3.3516 1.7547 12 1 2.2748 2.4496 1.7144 13 6 2.5536 4.3554 2.6814 14 7 3.2704 5.4471 2.7299 15 14 1.1101 4.1333 3.8460 16 1 1.5765 3.4742 5.0922 17 1 0.5307 5.4604 4.1749 18 1 0.0756 3.2888 3.1966 19 6 4.2833 -0.0213 -0.0048 20 6 3.5838 -1.2093 0.0006 21 6 4.3276 -2.5199 0.0006 22 6 2.1983 -1.2007 -0.0005 23 17 1.3247 -2.7010 -0.0019 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.6549 2.1301 -0.0004 28 1 6.8618 3.9230 -1.4907 29 1 6.2040 5.7492 0.0255 30 1 3.0535 6.1416 3.3715 31 1 5.3633 -0.0292 -0.0090 32 1 4.5072 -2.8357 -1.0271 33 1 5.2808 -2.3967 0.5148 34 1 3.7328 -3.2752 0.5141 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205037873.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:20 Heat of formation + Delta-G solvation = 43.738216 kcal Electronic energy + Delta-G solvation = -19911.094403 eV Core-core repulsion = 16833.908190 eV Total energy + Delta-G solvation = -3077.186213 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.54444 -38.48024 -36.08189 -34.28784 -33.29465 -32.80533 -31.58810 -29.27326 -26.95628 -26.63966 -25.86349 -23.40542 -22.07970 -20.41004 -20.17021 -17.80064 -16.32902 -16.15285 -15.42888 -15.28485 -14.89578 -14.26410 -14.04202 -13.48553 -13.04081 -12.97886 -12.90598 -12.55732 -12.45550 -12.10421 -11.82022 -11.74152 -11.57539 -11.47966 -11.28224 -11.00213 -10.82769 -10.62396 -10.28253 -10.15196 -9.95477 -9.66466 -9.25684 -8.37593 -8.11505 -7.64642 -7.44689 -6.68388 -4.83822 1.51168 1.82388 2.43923 2.53279 2.86880 2.93688 2.96822 3.09297 3.72021 4.16155 4.50132 5.06209 5.15901 5.20871 5.59066 5.65282 5.70078 5.81115 5.84860 5.88113 5.91946 5.92998 6.04042 6.11370 6.19762 6.36530 6.40929 6.57772 6.60474 6.81108 6.83053 6.91343 7.00532 7.26816 7.39650 7.53871 7.89864 8.23155 8.49530 9.09386 9.68331 9.93805 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.014722 B = 0.006522 C = 0.004867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.422354 B = 4292.043914 C = 5752.029208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.077 4.077 3 C -0.102 4.102 4 C 0.046 3.954 5 C -0.039 4.039 6 N -0.408 5.408 7 C -0.118 4.118 8 C 0.091 3.909 9 N -0.452 5.452 10 C 0.220 3.780 11 C -0.403 4.403 12 H 0.104 0.896 13 C 0.064 3.936 14 N -0.700 5.700 15 Si 0.909 3.091 16 H -0.264 1.264 17 H -0.272 1.272 18 H -0.255 1.255 19 C -0.104 4.104 20 C -0.079 4.079 21 C -0.112 4.112 22 C -0.056 4.056 23 Cl -0.090 7.090 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.139 0.861 28 H 0.129 0.871 29 H 0.131 0.869 30 H 0.280 0.720 31 H 0.125 0.875 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.483 -8.233 -1.564 9.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.078 4.078 3 C -0.122 4.122 4 C 0.044 3.956 5 C -0.185 4.185 6 N -0.120 5.120 7 C -0.280 4.280 8 C -0.081 4.081 9 N -0.168 5.168 10 C 0.096 3.904 11 C -0.432 4.432 12 H 0.122 0.878 13 C -0.164 4.164 14 N -0.319 5.319 15 Si 0.732 3.268 16 H -0.189 1.189 17 H -0.197 1.197 18 H -0.178 1.178 19 C -0.123 4.123 20 C -0.080 4.080 21 C -0.169 4.169 22 C -0.083 4.083 23 Cl -0.061 7.061 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.157 0.843 28 H 0.147 0.853 29 H 0.149 0.851 30 H 0.091 0.909 31 H 0.143 0.857 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.552 -8.114 -1.417 8.970 hybrid contribution -0.387 0.075 0.506 0.641 sum -3.939 -8.039 -0.911 8.999 Atomic orbital electron populations 1.20810 0.90932 1.03050 1.02320 1.19537 0.96145 0.91198 1.00950 1.21233 0.93545 0.97128 1.00258 1.18391 0.91959 0.91417 0.93809 1.20052 0.99686 0.95271 1.03526 1.67686 1.03808 1.22381 1.18165 1.22564 1.05294 0.92952 1.07191 1.23567 0.94574 0.97990 0.91991 1.69562 1.06039 1.21716 1.19492 1.19210 0.92682 0.87197 0.91326 1.20038 1.09159 1.02739 1.11297 0.87843 1.26255 0.97790 0.94472 0.97898 1.70062 1.31771 1.03867 1.26234 0.86263 0.80934 0.79164 0.80480 1.18926 1.19703 1.17813 1.21039 0.99728 0.90227 1.01355 1.19520 0.91341 0.95984 1.01116 1.20783 0.99858 0.93969 1.02271 1.20542 0.91270 0.85585 1.10861 1.98284 1.76728 1.33882 1.97209 0.91260 0.91331 0.91155 0.84282 0.85337 0.85115 0.90851 0.85664 0.91284 0.91518 0.91341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.61 9.61 36.01 0.35 -1.26 16 2 C -0.08 -1.33 5.88 -104.64 -0.62 -1.95 16 3 C -0.10 -2.01 7.15 -39.17 -0.28 -2.29 16 4 C 0.05 0.99 5.30 -104.90 -0.56 0.43 16 5 C -0.04 -0.96 6.40 -82.11 -0.53 -1.48 16 6 N -0.41 -9.81 10.32 -8.97 -0.09 -9.91 16 7 C -0.12 -2.64 11.22 -17.12 -0.19 -2.83 16 8 C 0.09 2.08 11.22 -17.29 -0.19 1.89 16 9 N -0.45 -11.85 8.05 -10.73 -0.09 -11.93 16 10 C 0.22 5.72 6.53 -84.55 -0.55 5.16 16 11 C -0.40 -9.92 7.92 -37.89 -0.30 -10.22 16 12 H 0.10 2.38 4.77 -52.49 -0.25 2.13 16 13 C 0.06 1.51 5.50 -17.31 -0.10 1.41 16 14 N -0.70 -17.29 11.49 55.56 0.64 -16.65 16 15 Si 0.91 17.25 29.56 -169.99 -5.03 12.22 16 16 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 17 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 18 H -0.25 -4.68 7.11 56.52 0.40 -4.28 16 19 C -0.10 -2.01 9.34 -39.16 -0.37 -2.38 16 20 C -0.08 -1.33 5.88 -104.64 -0.62 -1.95 16 21 C -0.11 -1.50 9.60 36.01 0.35 -1.16 16 22 C -0.06 -0.93 6.32 -39.35 -0.25 -1.18 16 23 Cl -0.09 -1.26 25.60 -51.86 -1.33 -2.59 16 24 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.07 0.89 6.89 -51.93 -0.36 0.54 16 26 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 27 H 0.14 2.77 6.75 -52.48 -0.35 2.42 16 28 H 0.13 2.45 8.06 -52.49 -0.42 2.02 16 29 H 0.13 2.55 8.06 -52.49 -0.42 2.13 16 30 H 0.28 6.22 8.29 -40.82 -0.34 5.88 16 31 H 0.13 2.38 8.06 -52.48 -0.42 1.96 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 34 H 0.07 0.86 6.89 -51.93 -0.36 0.50 16 LS Contribution 304.42 15.07 4.59 4.59 Total: -1.00 -27.64 304.42 -8.56 -36.20 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -3.41 Total: 5.86 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: -3.85 Total: -17.80 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: 0.46 Total: -38.49 kcal Atomic # 14 Polarization: 17.25 SS G_CDS: -5.03 Total: 12.22 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -1.33 Total: -2.59 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -27.64 -8.56 -36.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205037873.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.943 kcal (2) G-P(sol) polarization free energy of solvation -27.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds