Wall clock time and date at job start Tue Mar 31 2020 05:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37858 * 119.93032 * 2 1 4 4 C 1.39722 * 119.85981 * 179.97438 * 3 2 1 5 5 C 1.47755 * 120.14068 * 179.97438 * 4 3 2 6 6 N 1.32879 * 120.25445 * 225.75042 * 5 4 3 7 7 C 1.31998 * 120.07823 * 179.97438 * 6 5 4 8 8 C 1.39198 * 120.59276 * 359.97438 * 7 6 5 9 9 N 1.31603 * 120.50652 * 0.02562 * 8 7 6 10 10 C 1.33969 * 119.90470 * 359.97438 * 9 8 7 11 11 C 1.40782 * 120.29616 * 179.97438 * 10 9 8 12 12 H 1.07994 * 120.00701 * 175.67509 * 11 10 9 13 13 C 1.40175 * 119.99613 * 355.67235 * 11 10 9 14 14 N 1.30691 * 119.99773 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00154 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.46787 * 90.00088 * 15 13 11 17 17 H 1.48494 * 109.47168 * 210.00453 * 15 13 11 18 18 H 1.48499 * 109.47042 * 329.99986 * 15 13 11 19 19 C 1.39720 * 119.71942 * 0.27774 * 4 3 2 20 20 C 1.37869 * 119.85995 * 359.46586 * 19 4 3 21 21 C 1.50699 * 119.93408 * 180.25283 * 20 19 4 22 22 C 1.38547 * 119.92817 * 180.02562 * 2 1 3 23 23 Cl 1.73606 * 119.86104 * 0.02562 * 22 2 1 24 24 H 1.08993 * 109.46823 * 90.00084 * 1 2 3 25 25 H 1.09003 * 109.46907 * 210.00467 * 1 2 3 26 26 H 1.08997 * 109.47210 * 330.00141 * 1 2 3 27 27 H 1.08003 * 120.07125 * 359.97438 * 3 2 1 28 28 H 1.07998 * 119.70407 * 180.02562 * 7 6 5 29 29 H 1.07997 * 119.75002 * 180.27857 * 8 7 6 30 30 H 0.96999 * 119.99766 * 180.02562 * 14 13 11 31 31 H 1.08005 * 120.06990 * 179.71743 * 19 4 3 32 32 H 1.08999 * 109.46875 * 270.27860 * 21 20 19 33 33 H 1.09002 * 109.46870 * 30.28228 * 21 20 19 34 34 H 1.08994 * 109.47028 * 150.27942 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1949 1.1947 0.0000 4 6 3.5921 1.1930 0.0005 5 6 4.3356 2.4699 0.0000 6 7 5.3649 2.6449 -0.8219 7 6 6.0264 3.7872 -0.8199 8 6 5.6561 4.8186 0.0384 9 7 4.6404 4.6703 0.8619 10 6 3.9550 3.5193 0.8767 11 6 2.8674 3.3516 1.7547 12 1 2.2748 2.4496 1.7144 13 6 2.5536 4.3554 2.6814 14 7 3.2704 5.4471 2.7299 15 14 1.1101 4.1333 3.8460 16 1 1.5765 3.4742 5.0922 17 1 0.5307 5.4604 4.1749 18 1 0.0756 3.2888 3.1966 19 6 4.2833 -0.0213 -0.0048 20 6 3.5838 -1.2093 0.0006 21 6 4.3276 -2.5199 0.0006 22 6 2.1983 -1.2007 -0.0005 23 17 1.3247 -2.7010 -0.0019 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.6549 2.1301 -0.0004 28 1 6.8618 3.9230 -1.4907 29 1 6.2040 5.7492 0.0255 30 1 3.0535 6.1416 3.3715 31 1 5.3633 -0.0292 -0.0090 32 1 4.5072 -2.8357 -1.0271 33 1 5.2808 -2.3967 0.5148 34 1 3.7328 -3.2752 0.5141 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205037873.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:20 Heat of formation + Delta-G solvation = 29.782942 kcal Electronic energy + Delta-G solvation = -19911.699549 eV Core-core repulsion = 16833.908190 eV Total energy + Delta-G solvation = -3077.791359 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.17960 -40.03266 -37.34712 -36.05581 -34.58798 -34.45824 -33.30623 -30.87615 -28.34920 -28.10239 -27.34981 -25.08503 -23.87265 -21.80824 -21.68155 -19.59642 -18.00604 -17.62662 -17.03323 -16.80104 -16.54183 -15.88919 -15.29812 -14.87832 -14.79912 -14.49426 -14.07500 -13.94333 -13.84115 -13.46239 -13.28907 -13.08064 -12.98162 -12.86302 -12.82105 -12.24737 -12.22055 -12.10067 -11.85417 -11.70436 -11.51637 -11.45062 -11.03353 -10.01369 -9.49582 -9.42546 -9.07628 -8.44803 -6.67130 -0.00798 0.41265 0.71789 1.14040 1.23359 1.37635 1.50157 1.52940 2.14498 2.66146 2.77155 3.64842 3.72815 3.82150 3.91195 4.14622 4.30071 4.42469 4.44314 4.49954 4.60295 4.70421 4.79248 4.79696 4.83409 4.92571 4.97748 5.08946 5.14313 5.18833 5.34937 5.44532 5.50567 5.73360 5.79553 5.95391 6.09973 6.43669 6.67850 7.28074 7.86051 8.22546 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.014722 B = 0.006522 C = 0.004867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.422354 B = 4292.043914 C = 5752.029208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.075 4.075 3 C -0.114 4.114 4 C 0.016 3.984 5 C -0.049 4.049 6 N -0.426 5.426 7 C -0.121 4.121 8 C 0.078 3.922 9 N -0.487 5.487 10 C 0.189 3.811 11 C -0.424 4.424 12 H 0.112 0.888 13 C 0.023 3.977 14 N -0.738 5.738 15 Si 0.979 3.021 16 H -0.262 1.262 17 H -0.264 1.264 18 H -0.244 1.244 19 C -0.115 4.115 20 C -0.074 4.074 21 C -0.111 4.111 22 C -0.058 4.058 23 Cl -0.059 7.059 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.073 0.927 27 H 0.127 0.873 28 H 0.162 0.838 29 H 0.161 0.839 30 H 0.287 0.713 31 H 0.120 0.880 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.830 -10.212 -1.381 11.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.075 4.075 3 C -0.133 4.133 4 C 0.014 3.986 5 C -0.195 4.195 6 N -0.138 5.138 7 C -0.283 4.283 8 C -0.092 4.092 9 N -0.204 5.204 10 C 0.064 3.936 11 C -0.453 4.453 12 H 0.130 0.870 13 C -0.202 4.202 14 N -0.358 5.358 15 Si 0.798 3.202 16 H -0.187 1.187 17 H -0.188 1.188 18 H -0.167 1.167 19 C -0.135 4.135 20 C -0.075 4.075 21 C -0.167 4.167 22 C -0.085 4.085 23 Cl -0.030 7.030 24 H 0.104 0.896 25 H 0.100 0.900 26 H 0.092 0.908 27 H 0.145 0.855 28 H 0.179 0.821 29 H 0.178 0.822 30 H 0.098 0.902 31 H 0.138 0.862 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.880 -10.101 -1.259 11.288 hybrid contribution 0.074 0.586 0.357 0.690 sum -4.807 -9.515 -0.902 10.698 Atomic orbital electron populations 1.20889 0.88544 1.03932 1.03626 1.19835 0.97843 0.90497 0.99368 1.21146 0.92916 0.97771 1.01501 1.18477 0.92797 0.91033 0.96266 1.20468 0.99821 0.96273 1.02962 1.67765 1.04344 1.23174 1.18511 1.23109 1.05675 0.92323 1.07152 1.24071 0.94175 0.99412 0.91571 1.69514 1.07386 1.22451 1.21057 1.19658 0.93632 0.87849 0.92432 1.20357 1.09409 1.03677 1.11885 0.87049 1.27163 1.00285 0.93704 0.99031 1.70138 1.33535 1.04820 1.27323 0.85217 0.77498 0.79528 0.77935 1.18693 1.18784 1.16654 1.21034 0.99604 0.90546 1.02282 1.19844 0.91815 0.96549 0.99298 1.20862 1.00067 0.92186 1.03573 1.20699 0.91538 0.86773 1.09479 1.98294 1.75985 1.31718 1.96992 0.89635 0.89951 0.90766 0.85512 0.82062 0.82202 0.90184 0.86204 0.89729 0.90627 0.90079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.91 9.61 71.24 0.68 -2.22 16 2 C -0.07 -2.46 5.88 -19.88 -0.12 -2.58 16 3 C -0.11 -4.53 7.15 22.54 0.16 -4.36 16 4 C 0.02 0.70 5.30 -20.04 -0.11 0.59 16 5 C -0.05 -2.49 6.40 42.42 0.27 -2.22 16 6 N -0.43 -20.93 10.32 -182.31 -1.88 -22.81 16 7 C -0.12 -5.47 11.22 84.90 0.95 -4.52 16 8 C 0.08 3.66 11.22 84.96 0.95 4.62 16 9 N -0.49 -26.43 8.05 -187.85 -1.51 -27.94 16 10 C 0.19 10.18 6.53 40.36 0.26 10.45 16 11 C -0.42 -21.53 7.92 23.36 0.19 -21.35 16 12 H 0.11 5.28 4.77 -2.91 -0.01 5.26 16 13 C 0.02 1.09 5.50 85.33 0.47 1.56 16 14 N -0.74 -37.41 11.49 21.86 0.25 -37.16 16 15 Si 0.98 35.22 29.56 68.60 2.03 37.25 16 16 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 17 H -0.26 -9.01 7.11 99.48 0.71 -8.31 16 18 H -0.24 -8.23 7.11 99.48 0.71 -7.52 16 19 C -0.12 -4.47 9.34 22.54 0.21 -4.26 16 20 C -0.07 -2.39 5.88 -19.88 -0.12 -2.51 16 21 C -0.11 -2.67 9.60 71.24 0.68 -1.99 16 22 C -0.06 -1.81 6.32 22.42 0.14 -1.67 16 23 Cl -0.06 -1.46 25.60 -2.72 -0.07 -1.53 16 24 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.08 1.88 6.89 -2.39 -0.02 1.86 16 26 H 0.07 1.85 8.08 -2.39 -0.02 1.83 16 27 H 0.13 5.24 6.75 -2.91 -0.02 5.22 16 28 H 0.16 5.99 8.06 -2.91 -0.02 5.96 16 29 H 0.16 6.25 8.06 -2.91 -0.02 6.23 16 30 H 0.29 13.02 8.29 -92.71 -0.77 12.25 16 31 H 0.12 4.65 8.06 -2.91 -0.02 4.62 16 32 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.07 1.71 8.08 -2.39 -0.02 1.69 16 34 H 0.08 1.76 6.89 -2.39 -0.02 1.74 16 Total: -1.00 -61.23 304.42 4.59 -56.64 By element: Atomic # 1 Polarization: 24.86 SS G_CDS: 1.14 Total: 26.00 kcal Atomic # 6 Polarization: -35.09 SS G_CDS: 4.64 Total: -30.45 kcal Atomic # 7 Polarization: -84.77 SS G_CDS: -3.14 Total: -87.91 kcal Atomic # 14 Polarization: 35.22 SS G_CDS: 2.03 Total: 37.25 kcal Atomic # 17 Polarization: -1.46 SS G_CDS: -0.07 Total: -1.53 kcal Total: -61.23 4.59 -56.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205037873.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.422 kcal (2) G-P(sol) polarization free energy of solvation -61.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds