Wall clock time and date at job start Tue Mar 31 2020 05:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37879 * 119.93060 * 2 1 4 4 C 1.39684 * 119.86028 * 180.29716 * 3 2 1 5 5 C 1.47906 * 120.13129 * 179.74506 * 4 3 2 6 6 C 1.40446 * 120.79079 * 179.69695 * 5 4 3 7 7 N 1.31583 * 119.09179 * 179.73499 * 6 5 4 8 8 C 1.33646 * 120.82816 * 0.53206 * 7 6 5 9 9 C 1.41075 * 119.12788 * 179.72143 * 8 7 6 10 10 H 1.07999 * 119.99848 * 180.02562 * 9 8 7 11 11 C 1.40144 * 120.00269 * 0.02562 * 9 8 7 12 12 N 1.30659 * 119.99448 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99932 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47384 * 89.99527 * 13 11 9 15 15 H 1.48503 * 109.46696 * 209.99455 * 13 11 9 16 16 H 1.48501 * 109.47144 * 329.99211 * 13 11 9 17 17 N 1.33642 * 121.74010 * 359.74480 * 8 7 6 18 18 C 1.31579 * 120.83102 * 359.97438 * 17 8 7 19 19 C 1.39674 * 119.73174 * 359.72366 * 4 3 2 20 20 C 1.37877 * 119.86510 * 359.97438 * 19 4 3 21 21 C 1.50698 * 119.93312 * 179.97438 * 20 19 4 22 22 C 1.38546 * 119.93285 * 179.74474 * 2 1 3 23 23 Cl 1.73599 * 119.86690 * 359.97438 * 22 2 1 24 24 H 1.09003 * 109.47073 * 270.25250 * 1 2 3 25 25 H 1.09003 * 109.47542 * 30.25609 * 1 2 3 26 26 H 1.09005 * 109.46898 * 150.25558 * 1 2 3 27 27 H 1.07996 * 120.07240 * 0.02562 * 3 2 1 28 28 H 1.08001 * 120.45478 * 359.97438 * 6 5 4 29 29 H 0.97005 * 119.99651 * 180.02562 * 12 11 9 30 30 H 1.08005 * 120.45474 * 180.02562 * 18 17 8 31 31 H 1.08000 * 120.06706 * 179.97438 * 19 4 3 32 32 H 1.08999 * 109.46878 * 270.02327 * 21 20 19 33 33 H 1.08996 * 109.47483 * 30.02114 * 21 20 19 34 34 H 1.08999 * 109.47084 * 150.02522 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1949 1.1949 0.0000 4 6 3.5918 1.1932 -0.0063 5 6 4.3358 2.4715 -0.0120 6 6 5.7402 2.4860 -0.0120 7 7 6.3680 3.6423 -0.0225 8 6 5.6864 4.7918 -0.0224 9 6 6.3961 6.0110 -0.0279 10 1 5.8594 6.9482 -0.0275 11 6 7.7975 6.0061 -0.0338 12 7 8.4467 4.8722 -0.0338 13 14 8.7371 7.6206 -0.0403 14 1 8.9920 8.0507 1.3579 15 1 10.0311 7.4372 -0.7455 16 1 7.9353 8.6572 -0.7388 17 7 4.3502 4.8168 -0.0169 18 6 3.6548 3.6998 -0.0117 19 6 4.2830 -0.0205 -0.0067 20 6 3.5838 -1.2088 -0.0003 21 6 4.3280 -2.5192 -0.0013 22 6 2.1983 -1.2006 0.0053 23 17 1.3251 -2.7010 0.0127 24 1 -0.3633 0.0045 1.0277 25 1 -0.3634 0.8877 -0.5178 26 1 -0.3633 -0.8923 -0.5099 27 1 1.6550 2.1302 0.0004 28 1 6.2971 1.5607 -0.0073 29 1 9.4167 4.8688 -0.0375 30 1 2.5751 3.7271 -0.0076 31 1 5.3629 -0.0281 -0.0119 32 1 4.5023 -2.8372 -1.0292 33 1 5.2838 -2.3947 0.5075 34 1 3.7361 -3.2736 0.5169 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205052547.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:26 Heat of formation + Delta-G solvation = 43.516176 kcal Electronic energy + Delta-G solvation = -19181.328827 eV Core-core repulsion = 16104.132986 eV Total energy + Delta-G solvation = -3077.195841 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.58999 -38.59201 -36.19891 -34.18441 -33.49721 -32.55088 -31.93836 -29.40184 -27.27153 -26.59631 -26.07566 -22.94908 -22.66114 -20.37377 -20.24239 -18.10854 -16.61038 -16.29923 -15.49303 -14.90387 -14.74418 -14.53724 -14.23242 -13.36007 -13.15902 -13.10265 -12.93351 -12.81563 -12.52746 -12.27837 -11.90813 -11.82664 -11.51316 -11.47987 -11.37648 -11.15349 -11.07941 -10.91454 -10.44723 -10.31250 -9.72360 -9.34570 -9.30942 -8.84412 -8.35418 -7.50680 -7.41362 -6.78220 -4.91294 1.27329 1.63647 2.44890 2.54922 2.85265 2.92639 2.96283 3.00008 3.70072 4.04203 4.51680 4.90983 4.97043 5.20332 5.45693 5.49804 5.59737 5.67987 5.71832 5.74143 5.75830 5.79505 5.84337 5.93807 5.97093 6.13229 6.27267 6.29964 6.59533 6.67413 6.70724 6.77146 6.93756 7.21149 7.30897 7.46919 7.91907 8.24502 8.32650 8.89732 9.85977 10.05207 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.038225 B = 0.003432 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.332337 B = 8155.715872 C = 8867.596321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.059 4.059 3 C -0.145 4.145 4 C 0.055 3.945 5 C -0.336 4.336 6 C 0.185 3.815 7 N -0.508 5.508 8 C 0.377 3.623 9 C -0.370 4.370 10 H 0.098 0.902 11 C 0.058 3.942 12 N -0.692 5.692 13 Si 0.924 3.076 14 H -0.265 1.265 15 H -0.272 1.272 16 H -0.257 1.257 17 N -0.592 5.592 18 C 0.192 3.808 19 C -0.144 4.144 20 C -0.059 4.059 21 C -0.116 4.116 22 C -0.079 4.079 23 Cl -0.090 7.090 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.126 0.874 28 H 0.132 0.868 29 H 0.281 0.719 30 H 0.133 0.867 31 H 0.127 0.873 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.713 -9.501 0.050 11.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.060 4.060 3 C -0.164 4.164 4 C 0.052 3.948 5 C -0.346 4.346 6 C 0.008 3.992 7 N -0.224 5.224 8 C 0.146 3.854 9 C -0.402 4.402 10 H 0.116 0.884 11 C -0.171 4.171 12 N -0.312 5.312 13 Si 0.747 3.253 14 H -0.189 1.189 15 H -0.197 1.197 16 H -0.180 1.180 17 N -0.310 5.310 18 C 0.016 3.984 19 C -0.162 4.162 20 C -0.060 4.060 21 C -0.173 4.173 22 C -0.105 4.105 23 Cl -0.062 7.062 24 H 0.089 0.911 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.144 0.856 28 H 0.149 0.851 29 H 0.092 0.908 30 H 0.150 0.850 31 H 0.145 0.855 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.917 -8.665 0.037 10.493 hybrid contribution -0.133 -0.452 0.008 0.471 sum -6.050 -9.117 0.045 10.942 Atomic orbital electron populations 1.20826 0.91054 1.02920 1.02428 1.19516 0.95969 0.91332 0.99212 1.20935 0.93515 0.96625 1.05329 1.18755 0.92161 0.92386 0.91450 1.19702 0.95569 0.92681 1.26643 1.23071 0.89954 0.97022 0.89184 1.69357 1.37830 0.96989 1.18193 1.19966 0.84752 0.92149 0.88566 1.19575 0.90585 0.92503 1.37567 0.88387 1.26265 0.98333 0.98739 0.93739 1.70116 1.09348 1.27091 1.24658 0.86040 0.78817 0.80824 0.79658 1.18942 1.19699 1.18033 1.68657 1.09451 1.29747 1.23187 1.22699 0.98517 0.87833 0.89327 1.20959 0.99768 0.90464 1.05026 1.19527 0.91360 0.95959 0.99122 1.20828 0.99959 0.94022 1.02457 1.20436 0.91280 0.85605 1.13210 1.98285 1.76707 1.33857 1.97315 0.91130 0.91388 0.91266 0.85633 0.85057 0.90788 0.84986 0.85515 0.91109 0.91339 0.91268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.36 9.61 36.00 0.35 -1.01 16 2 C -0.06 -0.88 5.88 -104.64 -0.62 -1.49 16 3 C -0.15 -2.36 9.10 -39.17 -0.36 -2.72 16 4 C 0.05 0.99 5.88 -104.86 -0.62 0.38 16 5 C -0.34 -7.17 5.94 -104.28 -0.62 -7.79 16 6 C 0.19 4.26 10.70 -16.83 -0.18 4.08 16 7 N -0.51 -13.44 7.83 -12.41 -0.10 -13.54 16 8 C 0.38 10.21 7.35 -158.17 -1.16 9.04 16 9 C -0.37 -9.59 9.35 -37.79 -0.35 -9.94 16 10 H 0.10 2.42 7.85 -52.49 -0.41 2.01 16 11 C 0.06 1.39 5.50 -17.34 -0.10 1.29 16 12 N -0.69 -17.13 11.40 55.56 0.63 -16.49 16 13 Si 0.92 17.28 29.56 -169.99 -5.02 12.26 16 14 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 15 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 16 H -0.26 -4.75 7.11 56.52 0.40 -4.34 16 17 N -0.59 -15.10 10.34 -12.41 -0.13 -15.23 16 18 C 0.19 4.25 10.70 -16.83 -0.18 4.07 16 19 C -0.14 -2.37 9.10 -39.18 -0.36 -2.73 16 20 C -0.06 -0.88 5.88 -104.64 -0.62 -1.50 16 21 C -0.12 -1.39 9.61 36.00 0.35 -1.05 16 22 C -0.08 -1.17 6.32 -39.35 -0.25 -1.42 16 23 Cl -0.09 -1.15 25.60 -51.86 -1.33 -2.48 16 24 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16 26 H 0.07 0.77 6.89 -51.93 -0.36 0.41 16 27 H 0.13 1.87 6.29 -52.49 -0.33 1.54 16 28 H 0.13 2.64 6.33 -52.49 -0.33 2.30 16 29 H 0.28 6.17 8.29 -40.82 -0.34 5.84 16 30 H 0.13 2.45 6.33 -52.48 -0.33 2.12 16 31 H 0.13 1.98 6.29 -52.49 -0.33 1.65 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.75 8.08 -51.93 -0.42 0.33 16 34 H 0.07 0.78 6.89 -51.93 -0.36 0.43 16 LS Contribution 304.56 15.07 4.59 4.59 Total: -1.00 -28.08 304.56 -9.33 -37.41 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -3.27 Total: 4.27 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: -4.71 Total: -10.78 kcal Atomic # 7 Polarization: -45.67 SS G_CDS: 0.41 Total: -45.26 kcal Atomic # 14 Polarization: 17.28 SS G_CDS: -5.02 Total: 12.26 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -1.33 Total: -2.48 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.08 -9.33 -37.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205052547.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.927 kcal (2) G-P(sol) polarization free energy of solvation -28.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds