Wall clock time and date at job start Tue Mar 31 2020 05:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37879 * 119.93060 * 2 1 4 4 C 1.39684 * 119.86028 * 180.29716 * 3 2 1 5 5 C 1.47906 * 120.13129 * 179.74506 * 4 3 2 6 6 C 1.40446 * 120.79079 * 179.69695 * 5 4 3 7 7 N 1.31583 * 119.09179 * 179.73499 * 6 5 4 8 8 C 1.33646 * 120.82816 * 0.53206 * 7 6 5 9 9 C 1.41075 * 119.12788 * 179.72143 * 8 7 6 10 10 H 1.07999 * 119.99848 * 180.02562 * 9 8 7 11 11 C 1.40144 * 120.00269 * 0.02562 * 9 8 7 12 12 N 1.30659 * 119.99448 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99932 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47384 * 89.99527 * 13 11 9 15 15 H 1.48503 * 109.46696 * 209.99455 * 13 11 9 16 16 H 1.48501 * 109.47144 * 329.99211 * 13 11 9 17 17 N 1.33642 * 121.74010 * 359.74480 * 8 7 6 18 18 C 1.31579 * 120.83102 * 359.97438 * 17 8 7 19 19 C 1.39674 * 119.73174 * 359.72366 * 4 3 2 20 20 C 1.37877 * 119.86510 * 359.97438 * 19 4 3 21 21 C 1.50698 * 119.93312 * 179.97438 * 20 19 4 22 22 C 1.38546 * 119.93285 * 179.74474 * 2 1 3 23 23 Cl 1.73599 * 119.86690 * 359.97438 * 22 2 1 24 24 H 1.09003 * 109.47073 * 270.25250 * 1 2 3 25 25 H 1.09003 * 109.47542 * 30.25609 * 1 2 3 26 26 H 1.09005 * 109.46898 * 150.25558 * 1 2 3 27 27 H 1.07996 * 120.07240 * 0.02562 * 3 2 1 28 28 H 1.08001 * 120.45478 * 359.97438 * 6 5 4 29 29 H 0.97005 * 119.99651 * 180.02562 * 12 11 9 30 30 H 1.08005 * 120.45474 * 180.02562 * 18 17 8 31 31 H 1.08000 * 120.06706 * 179.97438 * 19 4 3 32 32 H 1.08999 * 109.46878 * 270.02327 * 21 20 19 33 33 H 1.08996 * 109.47483 * 30.02114 * 21 20 19 34 34 H 1.08999 * 109.47084 * 150.02522 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1949 1.1949 0.0000 4 6 3.5918 1.1932 -0.0063 5 6 4.3358 2.4715 -0.0120 6 6 5.7402 2.4860 -0.0120 7 7 6.3680 3.6423 -0.0225 8 6 5.6864 4.7918 -0.0224 9 6 6.3961 6.0110 -0.0279 10 1 5.8594 6.9482 -0.0275 11 6 7.7975 6.0061 -0.0338 12 7 8.4467 4.8722 -0.0338 13 14 8.7371 7.6206 -0.0403 14 1 8.9920 8.0507 1.3579 15 1 10.0311 7.4372 -0.7455 16 1 7.9353 8.6572 -0.7388 17 7 4.3502 4.8168 -0.0169 18 6 3.6548 3.6998 -0.0117 19 6 4.2830 -0.0205 -0.0067 20 6 3.5838 -1.2088 -0.0003 21 6 4.3280 -2.5192 -0.0013 22 6 2.1983 -1.2006 0.0053 23 17 1.3251 -2.7010 0.0127 24 1 -0.3633 0.0045 1.0277 25 1 -0.3634 0.8877 -0.5178 26 1 -0.3633 -0.8923 -0.5099 27 1 1.6550 2.1302 0.0004 28 1 6.2971 1.5607 -0.0073 29 1 9.4167 4.8688 -0.0375 30 1 2.5751 3.7271 -0.0076 31 1 5.3629 -0.0281 -0.0119 32 1 4.5023 -2.8372 -1.0292 33 1 5.2838 -2.3947 0.5075 34 1 3.7361 -3.2736 0.5169 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205052547.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:26 Heat of formation + Delta-G solvation = 29.902386 kcal Electronic energy + Delta-G solvation = -19181.919165 eV Core-core repulsion = 16104.132986 eV Total energy + Delta-G solvation = -3077.786180 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.14806 -40.08786 -37.35741 -35.89700 -34.64278 -34.08267 -33.71541 -30.98495 -28.52674 -27.79227 -27.61263 -24.63681 -24.32147 -21.76010 -21.56380 -19.87798 -18.14639 -17.76384 -17.06032 -16.34835 -16.20549 -16.06407 -15.38469 -14.94768 -14.70631 -14.37401 -14.32022 -14.02349 -13.67039 -13.54613 -13.14098 -13.03078 -12.93916 -12.89351 -12.79958 -12.55757 -12.44837 -12.19111 -11.96308 -11.44953 -11.37286 -11.20222 -11.06158 -10.35920 -9.54851 -9.34308 -8.94879 -8.53364 -6.76857 -0.15885 0.40537 0.94258 1.05301 1.27858 1.39323 1.51599 1.56130 2.16363 2.57293 2.90777 3.77801 3.79983 3.87042 3.87558 3.95118 3.98622 4.32122 4.41243 4.41848 4.59036 4.65102 4.73587 4.78842 4.82731 4.83928 4.98972 5.07416 5.18331 5.21622 5.35551 5.43306 5.48879 5.72554 5.81015 5.97215 6.06099 6.41902 6.50409 7.08929 8.11663 8.25470 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.038225 B = 0.003432 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.332337 B = 8155.715872 C = 8867.596321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.063 4.063 3 C -0.144 4.144 4 C 0.024 3.976 5 C -0.319 4.319 6 C 0.166 3.834 7 N -0.539 5.539 8 C 0.350 3.650 9 C -0.414 4.414 10 H 0.095 0.905 11 C 0.020 3.980 12 N -0.732 5.732 13 Si 1.003 2.997 14 H -0.258 1.258 15 H -0.260 1.260 16 H -0.255 1.255 17 N -0.618 5.618 18 C 0.177 3.823 19 C -0.146 4.146 20 C -0.064 4.064 21 C -0.115 4.115 22 C -0.078 4.078 23 Cl -0.067 7.067 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.137 0.863 28 H 0.153 0.847 29 H 0.289 0.711 30 H 0.166 0.834 31 H 0.130 0.870 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.915 -11.116 0.052 13.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.064 4.064 3 C -0.163 4.163 4 C 0.023 3.977 5 C -0.328 4.328 6 C -0.010 4.010 7 N -0.256 5.256 8 C 0.117 3.883 9 C -0.447 4.447 10 H 0.113 0.887 11 C -0.205 4.205 12 N -0.353 5.353 13 Si 0.821 3.179 14 H -0.183 1.183 15 H -0.184 1.184 16 H -0.178 1.178 17 N -0.338 5.338 18 C 0.004 3.996 19 C -0.165 4.165 20 C -0.064 4.064 21 C -0.172 4.172 22 C -0.104 4.104 23 Cl -0.038 7.038 24 H 0.101 0.899 25 H 0.099 0.901 26 H 0.095 0.905 27 H 0.154 0.846 28 H 0.170 0.830 29 H 0.100 0.900 30 H 0.183 0.817 31 H 0.148 0.852 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.171 -10.356 0.040 12.596 hybrid contribution -0.040 -0.339 0.011 0.341 sum -7.210 -10.694 0.051 12.898 Atomic orbital electron populations 1.20897 0.88668 1.04000 1.03548 1.19853 0.97725 0.90700 0.98105 1.21097 0.92755 0.97899 1.04519 1.18711 0.93083 0.91435 0.94516 1.19960 0.95155 0.94049 1.23667 1.23527 0.91230 0.97012 0.89210 1.69322 1.38798 0.97735 1.19730 1.20369 0.85584 0.92930 0.89402 1.19854 0.92120 0.92239 1.40495 0.88688 1.27181 0.98290 1.02551 0.92482 1.70170 1.10046 1.29356 1.25704 0.84896 0.77343 0.75777 0.79869 1.18269 1.18441 1.17825 1.68671 1.09208 1.31307 1.24570 1.23279 1.00024 0.87501 0.88844 1.21079 1.00162 0.90613 1.04642 1.19832 0.91797 0.96603 0.98206 1.20893 1.00242 0.92533 1.03496 1.20718 0.91643 0.86788 1.11277 1.98299 1.76119 1.32263 1.97093 0.89860 0.90086 0.90507 0.84573 0.82954 0.89972 0.81700 0.85190 0.89919 0.90361 0.90389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.29 9.61 71.24 0.68 -1.60 16 2 C -0.06 -1.69 5.88 -19.88 -0.12 -1.80 16 3 C -0.14 -4.41 9.10 22.53 0.21 -4.20 16 4 C 0.02 0.86 5.88 -20.02 -0.12 0.75 16 5 C -0.32 -13.72 5.94 -19.64 -0.12 -13.83 16 6 C 0.17 7.82 10.70 85.27 0.91 8.73 16 7 N -0.54 -29.75 7.83 -193.17 -1.51 -31.26 16 8 C 0.35 19.87 7.35 134.91 0.99 20.86 16 9 C -0.41 -22.53 9.35 23.43 0.22 -22.31 16 10 H 0.10 4.96 7.85 -2.91 -0.02 4.94 16 11 C 0.02 0.99 5.50 85.33 0.47 1.45 16 12 N -0.73 -37.52 11.40 21.86 0.25 -37.27 16 13 Si 1.00 36.11 29.56 68.60 2.03 38.14 16 14 H -0.26 -8.94 7.11 99.48 0.71 -8.23 16 15 H -0.26 -8.75 7.11 99.48 0.71 -8.04 16 16 H -0.25 -8.95 7.11 99.48 0.71 -8.24 16 17 N -0.62 -32.67 10.34 -193.17 -2.00 -34.67 16 18 C 0.18 7.92 10.70 85.27 0.91 8.84 16 19 C -0.15 -4.65 9.10 22.53 0.21 -4.45 16 20 C -0.06 -1.75 5.88 -19.88 -0.12 -1.87 16 21 C -0.12 -2.43 9.61 71.24 0.68 -1.75 16 22 C -0.08 -2.07 6.32 22.42 0.14 -1.93 16 23 Cl -0.07 -1.48 25.60 -2.72 -0.07 -1.54 16 24 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.08 1.43 8.08 -2.39 -0.02 1.41 16 26 H 0.08 1.43 6.89 -2.38 -0.02 1.41 16 27 H 0.14 3.77 6.29 -2.91 -0.02 3.75 16 28 H 0.15 6.25 6.33 -2.91 -0.02 6.23 16 29 H 0.29 13.08 8.29 -92.70 -0.77 12.31 16 30 H 0.17 6.01 6.33 -2.91 -0.02 5.99 16 31 H 0.13 3.94 6.29 -2.91 -0.02 3.93 16 32 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.08 1.51 8.08 -2.39 -0.02 1.49 16 34 H 0.08 1.51 6.89 -2.39 -0.02 1.50 16 Total: -1.00 -63.05 304.56 4.80 -58.25 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: 1.15 Total: 21.47 kcal Atomic # 6 Polarization: -18.07 SS G_CDS: 4.96 Total: -13.11 kcal Atomic # 7 Polarization: -99.94 SS G_CDS: -3.26 Total: -103.20 kcal Atomic # 14 Polarization: 36.11 SS G_CDS: 2.03 Total: 38.14 kcal Atomic # 17 Polarization: -1.48 SS G_CDS: -0.07 Total: -1.54 kcal Total: -63.05 4.80 -58.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205052547.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.154 kcal (2) G-P(sol) polarization free energy of solvation -63.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds