Wall clock time and date at job start Tue Mar 31 2020 05:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35906 * 116.99874 * 2 1 4 4 C 1.38804 * 119.99057 * 359.97438 * 3 2 1 5 5 C 1.38319 * 120.17069 * 180.02562 * 4 3 2 6 6 Cl 1.73606 * 119.92155 * 179.97438 * 5 4 3 7 7 C 1.38199 * 120.15489 * 359.67682 * 5 4 3 8 8 C 1.39307 * 119.97301 * 0.59862 * 7 5 4 9 9 C 1.48416 * 120.08656 * 179.70141 * 8 7 5 10 10 C 1.39721 * 120.00216 * 179.45305 * 9 8 7 11 11 C 1.38388 * 120.38370 * 180.27833 * 10 9 8 12 12 C 1.37720 * 120.38012 * 359.97438 * 11 10 9 13 13 C 1.40754 * 119.98519 * 0.02562 * 12 11 10 14 14 C 1.41424 * 120.18893 * 180.02562 * 13 12 11 15 15 H 1.07998 * 120.00047 * 150.17652 * 14 13 12 16 16 C 1.39935 * 119.99900 * 330.17935 * 14 13 12 17 17 N 1.30821 * 120.00121 * 161.72847 * 16 14 13 18 18 Si 1.86804 * 119.99835 * 341.73166 * 16 14 13 19 19 H 1.48495 * 109.47048 * 95.41167 * 18 16 14 20 20 H 1.48499 * 109.46814 * 215.41402 * 18 16 14 21 21 H 1.48501 * 109.47130 * 335.40913 * 18 16 14 22 22 C 1.38724 * 119.99973 * 359.72131 * 9 8 7 23 23 C 1.38518 * 119.98704 * 180.02562 * 3 2 1 24 24 H 1.08999 * 109.46879 * 300.00563 * 1 2 3 25 25 H 1.08999 * 109.46710 * 59.99759 * 1 2 3 26 26 H 1.08991 * 109.47076 * 180.02562 * 1 2 3 27 27 H 1.07998 * 119.91233 * 0.02562 * 4 3 2 28 28 H 1.07997 * 120.01266 * 180.30023 * 7 5 4 29 29 H 1.08008 * 119.80971 * 0.26868 * 10 9 8 30 30 H 1.07999 * 119.81133 * 179.97438 * 11 10 9 31 31 H 1.07996 * 120.00735 * 179.97438 * 12 11 10 32 32 H 0.97001 * 120.00631 * 180.02562 * 17 16 14 33 33 H 1.08007 * 120.18758 * 359.75095 * 22 9 8 34 34 H 1.08008 * 120.07451 * 359.95878 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2898 2.3749 -0.0005 5 6 1.9139 3.6093 -0.0011 6 17 0.9617 5.0610 -0.0024 7 6 3.2935 3.6898 0.0057 8 6 4.0585 2.5256 0.0004 9 6 5.5404 2.6091 0.0009 10 6 6.3060 1.4403 0.0072 11 6 7.6881 1.5090 0.0135 12 6 8.3248 2.7302 0.0132 13 6 7.5690 3.9175 0.0069 14 6 8.2184 5.1739 0.0060 15 1 7.7473 6.0249 -0.4634 16 6 9.4713 5.3144 0.6132 17 7 10.2293 6.3392 0.3194 18 14 10.0613 4.0383 1.8433 19 1 10.9135 3.0393 1.1498 20 1 10.8496 4.7063 2.9098 21 1 8.8898 3.3549 2.4481 22 6 6.1653 3.8476 0.0008 23 6 3.4293 1.2832 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 0.2114 2.3165 -0.0005 28 1 3.7783 4.6548 0.0101 29 1 5.8162 0.4776 0.0073 30 1 8.2709 0.5997 0.0188 31 1 9.4038 2.7767 0.0186 32 1 11.0980 6.4365 0.7400 33 1 5.5765 4.7530 -0.0037 34 1 4.0186 0.3780 -0.0003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205135211.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:47 Heat of formation + Delta-G solvation = -7.303673 kcal Electronic energy + Delta-G solvation = -19180.231359 eV Core-core repulsion = 16068.539053 eV Total energy + Delta-G solvation = -3111.692307 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.17420 -38.34164 -37.21860 -36.17121 -33.73828 -31.87450 -30.75466 -30.13622 -28.31584 -27.36510 -25.24616 -23.05638 -22.55436 -20.54752 -20.28357 -18.29678 -16.94250 -16.51559 -16.17082 -15.84819 -15.62361 -14.87191 -14.47936 -14.08826 -13.87423 -13.37585 -13.35822 -12.88192 -12.71539 -12.29107 -12.13750 -11.93478 -11.85104 -11.55223 -11.22986 -11.05670 -10.92088 -10.78817 -10.56706 -10.35126 -9.87525 -9.63425 -9.27772 -8.96801 -8.21485 -7.77273 -7.35376 -6.99221 -4.54917 1.03016 1.39244 2.13617 2.54701 2.63505 3.07762 3.17185 3.18819 3.28594 3.83524 3.94857 4.51038 4.79139 4.85971 4.97924 5.10115 5.19974 5.29492 5.35024 5.44565 5.53193 5.67375 5.98867 6.05850 6.22215 6.31484 6.42034 6.48203 6.55856 6.76441 6.89679 7.06181 7.29030 7.32497 7.49825 7.63540 7.77719 7.98767 8.29092 8.55611 8.73710 10.03146 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.021072 B = 0.004297 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.445217 B = 6514.082255 C = 7618.291649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.314 6.314 3 C 0.138 3.862 4 C -0.218 4.218 5 C 0.008 3.992 6 Cl -0.075 7.075 7 C -0.143 4.143 8 C 0.037 3.963 9 C -0.035 4.035 10 C -0.221 4.221 11 C -0.080 4.080 12 C -0.227 4.227 13 C 0.089 3.911 14 C -0.448 4.448 15 H 0.092 0.908 16 C 0.085 3.915 17 N -0.807 5.807 18 Si 0.910 3.090 19 H -0.270 1.270 20 H -0.290 1.290 21 H -0.244 1.244 22 C -0.180 4.180 23 C -0.147 4.147 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.099 0.901 27 H 0.133 0.867 28 H 0.141 0.859 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.286 0.714 33 H 0.107 0.893 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.001 -8.155 0.633 17.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.228 6.228 3 C 0.092 3.908 4 C -0.238 4.238 5 C -0.018 4.018 6 Cl -0.046 7.046 7 C -0.162 4.162 8 C 0.036 3.964 9 C -0.035 4.035 10 C -0.240 4.240 11 C -0.099 4.099 12 C -0.247 4.247 13 C 0.086 3.914 14 C -0.476 4.476 15 H 0.110 0.890 16 C -0.134 4.134 17 N -0.431 5.431 18 Si 0.736 3.264 19 H -0.196 1.196 20 H -0.217 1.217 21 H -0.167 1.167 22 C -0.199 4.199 23 C -0.165 4.165 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.117 0.883 27 H 0.151 0.849 28 H 0.159 0.841 29 H 0.118 0.882 30 H 0.116 0.884 31 H 0.120 0.880 32 H 0.096 0.904 33 H 0.125 0.875 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -14.792 -8.002 0.640 16.830 hybrid contribution 0.058 -0.116 0.490 0.507 sum -14.734 -8.118 1.130 16.860 Atomic orbital electron populations 1.23052 0.78586 1.03806 1.01415 1.86094 1.21229 1.26546 1.88895 1.18681 0.91931 0.83602 0.96542 1.20920 1.00159 0.90678 1.12008 1.20466 0.91581 0.86800 1.02999 1.98356 1.72303 1.37053 1.96913 1.21175 0.90922 1.00006 1.04049 1.18760 0.93491 0.90933 0.93179 1.18278 0.88578 0.94453 1.02215 1.20448 0.93399 0.95816 1.14347 1.20548 0.94042 0.96493 0.98782 1.21158 0.98378 0.92788 1.12337 1.17652 0.91403 0.92963 0.89349 1.19482 1.00681 0.95947 1.31536 0.89031 1.26141 0.95026 0.95936 0.96324 1.69690 1.09297 1.28555 1.35526 0.86334 0.79954 0.80157 0.79954 1.19599 1.21749 1.16685 1.21169 0.94345 0.94928 1.09462 1.20618 0.90862 0.98842 1.06190 0.92648 0.92635 0.88291 0.84927 0.84091 0.88184 0.88426 0.88048 0.90388 0.87507 0.84280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.31 -3.98 10.49 -19.44 -0.20 -4.19 16 3 C 0.14 1.97 6.68 -39.27 -0.26 1.71 16 4 C -0.22 -2.92 8.81 -39.34 -0.35 -3.27 16 5 C 0.01 0.12 6.31 -39.57 -0.25 -0.13 16 6 Cl -0.08 -0.99 28.95 -51.86 -1.50 -2.49 16 7 C -0.14 -2.37 9.20 -39.20 -0.36 -2.73 16 8 C 0.04 0.65 5.87 -104.92 -0.62 0.04 16 9 C -0.04 -0.72 5.87 -104.97 -0.62 -1.33 16 10 C -0.22 -4.42 9.43 -38.97 -0.37 -4.79 16 11 C -0.08 -1.68 10.01 -39.72 -0.40 -2.08 16 12 C -0.23 -5.33 7.17 -38.82 -0.28 -5.61 16 13 C 0.09 2.20 5.10 -106.86 -0.55 1.66 16 14 C -0.45 -11.85 9.57 -37.73 -0.36 -12.21 16 15 H 0.09 2.53 8.06 -52.49 -0.42 2.10 16 16 C 0.08 2.18 5.40 -17.35 -0.09 2.09 16 17 N -0.81 -21.20 13.93 55.55 0.77 -20.42 16 18 Si 0.91 20.41 24.52 -169.99 -4.17 16.24 16 19 H -0.27 -5.86 6.71 56.52 0.38 -5.48 16 20 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.24 -5.61 6.86 56.52 0.39 -5.22 16 22 C -0.18 -4.05 9.17 -38.53 -0.35 -4.40 16 23 C -0.15 -2.34 9.36 -39.10 -0.37 -2.71 16 24 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 25 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 26 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.13 1.44 6.28 -52.49 -0.33 1.11 16 28 H 0.14 2.34 6.19 -52.49 -0.32 2.01 16 29 H 0.10 1.73 6.18 -52.48 -0.32 1.41 16 30 H 0.10 1.76 8.06 -52.49 -0.42 1.33 16 31 H 0.10 2.37 4.72 -52.49 -0.25 2.12 16 32 H 0.29 6.79 8.30 -40.82 -0.34 6.45 16 33 H 0.11 2.26 6.19 -52.48 -0.32 1.93 16 34 H 0.14 2.11 6.19 -52.48 -0.32 1.78 16 LS Contribution 299.95 15.07 4.52 4.52 Total: -1.00 -27.12 299.95 -7.91 -35.04 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -3.11 Total: 3.85 kcal Atomic # 6 Polarization: -28.32 SS G_CDS: -4.22 Total: -32.55 kcal Atomic # 7 Polarization: -21.20 SS G_CDS: 0.77 Total: -20.42 kcal Atomic # 8 Polarization: -3.98 SS G_CDS: -0.20 Total: -4.19 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.17 Total: 16.24 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -1.50 Total: -2.49 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -27.12 -7.91 -35.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205135211.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.732 kcal (2) G-P(sol) polarization free energy of solvation -27.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds