Wall clock time and date at job start Tue Mar 31 2020 05:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35906 * 116.99874 * 2 1 4 4 C 1.38804 * 119.99057 * 359.97438 * 3 2 1 5 5 C 1.38319 * 120.17069 * 180.02562 * 4 3 2 6 6 Cl 1.73606 * 119.92155 * 179.97438 * 5 4 3 7 7 C 1.38199 * 120.15489 * 359.67682 * 5 4 3 8 8 C 1.39307 * 119.97301 * 0.59862 * 7 5 4 9 9 C 1.48416 * 120.08656 * 179.70141 * 8 7 5 10 10 C 1.39721 * 120.00216 * 179.45305 * 9 8 7 11 11 C 1.38388 * 120.38370 * 180.27833 * 10 9 8 12 12 C 1.37720 * 120.38012 * 359.97438 * 11 10 9 13 13 C 1.40754 * 119.98519 * 0.02562 * 12 11 10 14 14 C 1.41424 * 120.18893 * 180.02562 * 13 12 11 15 15 H 1.07998 * 120.00047 * 150.17652 * 14 13 12 16 16 C 1.39935 * 119.99900 * 330.17935 * 14 13 12 17 17 N 1.30821 * 120.00121 * 161.72847 * 16 14 13 18 18 Si 1.86804 * 119.99835 * 341.73166 * 16 14 13 19 19 H 1.48495 * 109.47048 * 95.41167 * 18 16 14 20 20 H 1.48499 * 109.46814 * 215.41402 * 18 16 14 21 21 H 1.48501 * 109.47130 * 335.40913 * 18 16 14 22 22 C 1.38724 * 119.99973 * 359.72131 * 9 8 7 23 23 C 1.38518 * 119.98704 * 180.02562 * 3 2 1 24 24 H 1.08999 * 109.46879 * 300.00563 * 1 2 3 25 25 H 1.08999 * 109.46710 * 59.99759 * 1 2 3 26 26 H 1.08991 * 109.47076 * 180.02562 * 1 2 3 27 27 H 1.07998 * 119.91233 * 0.02562 * 4 3 2 28 28 H 1.07997 * 120.01266 * 180.30023 * 7 5 4 29 29 H 1.08008 * 119.80971 * 0.26868 * 10 9 8 30 30 H 1.07999 * 119.81133 * 179.97438 * 11 10 9 31 31 H 1.07996 * 120.00735 * 179.97438 * 12 11 10 32 32 H 0.97001 * 120.00631 * 180.02562 * 17 16 14 33 33 H 1.08007 * 120.18758 * 359.75095 * 22 9 8 34 34 H 1.08008 * 120.07451 * 359.95878 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2898 2.3749 -0.0005 5 6 1.9139 3.6093 -0.0011 6 17 0.9617 5.0610 -0.0024 7 6 3.2935 3.6898 0.0057 8 6 4.0585 2.5256 0.0004 9 6 5.5404 2.6091 0.0009 10 6 6.3060 1.4403 0.0072 11 6 7.6881 1.5090 0.0135 12 6 8.3248 2.7302 0.0132 13 6 7.5690 3.9175 0.0069 14 6 8.2184 5.1739 0.0060 15 1 7.7473 6.0249 -0.4634 16 6 9.4713 5.3144 0.6132 17 7 10.2293 6.3392 0.3194 18 14 10.0613 4.0383 1.8433 19 1 10.9135 3.0393 1.1498 20 1 10.8496 4.7063 2.9098 21 1 8.8898 3.3549 2.4481 22 6 6.1653 3.8476 0.0008 23 6 3.4293 1.2832 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 0.2114 2.3165 -0.0005 28 1 3.7783 4.6548 0.0101 29 1 5.8162 0.4776 0.0073 30 1 8.2709 0.5997 0.0188 31 1 9.4038 2.7767 0.0186 32 1 11.0980 6.4365 0.7400 33 1 5.5765 4.7530 -0.0037 34 1 4.0186 0.3780 -0.0003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205135211.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:47 Heat of formation + Delta-G solvation = -20.989938 kcal Electronic energy + Delta-G solvation = -19180.824840 eV Core-core repulsion = 16068.539053 eV Total energy + Delta-G solvation = -3112.285788 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.29589 -39.79395 -38.47314 -37.35392 -35.54895 -33.36355 -32.29369 -31.47598 -29.75080 -28.20509 -27.02040 -24.45284 -23.86918 -21.98178 -21.93268 -19.67263 -18.53217 -17.85463 -17.41774 -17.07459 -16.69922 -16.36034 -15.97094 -15.42990 -15.37053 -14.74099 -14.52668 -14.47482 -14.28419 -13.86775 -13.52583 -13.15006 -13.07433 -12.83168 -12.63004 -12.58672 -12.30127 -12.07380 -11.99914 -11.73608 -11.63413 -11.37727 -11.04589 -10.33701 -9.55798 -9.35154 -8.91842 -8.88827 -6.51804 -0.28386 0.19205 0.79211 1.00523 1.06734 1.26984 1.41329 1.49756 2.12248 2.26890 2.44715 2.78200 3.53295 3.61133 3.88773 3.99455 4.15910 4.25194 4.28540 4.42193 4.42853 4.48579 4.54353 4.70604 4.78351 4.91332 4.98613 5.06316 5.10641 5.22698 5.35341 5.49587 5.59357 5.78565 5.88446 5.97530 6.21912 6.32306 6.37649 6.71196 6.81355 8.19064 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.021072 B = 0.004297 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.445217 B = 6514.082255 C = 7618.291649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.323 6.323 3 C 0.143 3.857 4 C -0.202 4.202 5 C 0.004 3.996 6 Cl -0.062 7.062 7 C -0.156 4.156 8 C 0.012 3.988 9 C -0.032 4.032 10 C -0.206 4.206 11 C -0.083 4.083 12 C -0.243 4.243 13 C 0.071 3.929 14 C -0.488 4.488 15 H 0.055 0.945 16 C 0.049 3.951 17 N -0.851 5.851 18 Si 0.964 3.036 19 H -0.255 1.255 20 H -0.278 1.278 21 H -0.253 1.253 22 C -0.199 4.199 23 C -0.148 4.148 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.124 0.876 27 H 0.164 0.836 28 H 0.129 0.871 29 H 0.136 0.864 30 H 0.135 0.865 31 H 0.099 0.901 32 H 0.293 0.707 33 H 0.105 0.895 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.488 -11.565 1.183 20.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.237 6.237 3 C 0.097 3.903 4 C -0.221 4.221 5 C -0.023 4.023 6 Cl -0.033 7.033 7 C -0.175 4.175 8 C 0.012 3.988 9 C -0.032 4.032 10 C -0.225 4.225 11 C -0.100 4.100 12 C -0.262 4.262 13 C 0.069 3.931 14 C -0.517 4.517 15 H 0.074 0.926 16 C -0.166 4.166 17 N -0.478 5.478 18 Si 0.787 3.213 19 H -0.180 1.180 20 H -0.205 1.205 21 H -0.177 1.177 22 C -0.218 4.218 23 C -0.166 4.166 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.142 0.858 27 H 0.181 0.819 28 H 0.147 0.853 29 H 0.154 0.846 30 H 0.153 0.847 31 H 0.117 0.883 32 H 0.104 0.896 33 H 0.123 0.877 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -17.294 -11.420 1.181 20.758 hybrid contribution 0.427 0.764 0.249 0.910 sum -16.867 -10.656 1.429 20.002 Atomic orbital electron populations 1.23443 0.76057 1.06016 1.02512 1.86098 1.23764 1.25433 1.88394 1.18661 0.91554 0.84588 0.95485 1.21240 1.01690 0.89671 1.09523 1.20517 0.91034 0.87999 1.02703 1.98363 1.71632 1.36454 1.96820 1.21142 0.92038 0.99357 1.04924 1.18582 0.91952 0.92263 0.96037 1.18575 0.90612 0.93745 1.00254 1.20965 0.93289 0.97112 1.11146 1.20968 0.94832 0.96812 0.97431 1.21284 0.98441 0.93375 1.13074 1.17790 0.92465 0.92842 0.90018 1.19455 1.02070 0.96012 1.34207 0.92649 1.26796 0.94788 0.97661 0.97318 1.69722 1.10216 1.30451 1.37365 0.85511 0.79292 0.78327 0.78159 1.17992 1.20487 1.17716 1.21286 0.93821 0.96256 1.10464 1.20674 0.92013 0.98151 1.05809 0.91494 0.91479 0.85769 0.81898 0.85347 0.84605 0.84744 0.88295 0.89613 0.87743 0.83371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.81 113.37 1.11 1.27 16 2 O -0.32 -6.86 10.49 -92.49 -0.97 -7.83 16 3 C 0.14 3.59 6.68 22.47 0.15 3.74 16 4 C -0.20 -4.70 8.81 22.42 0.20 -4.50 16 5 C 0.00 0.12 6.31 22.28 0.14 0.26 16 6 Cl -0.06 -1.51 28.95 -2.72 -0.08 -1.59 16 7 C -0.16 -5.09 9.20 22.52 0.21 -4.88 16 8 C 0.01 0.42 5.87 -20.06 -0.12 0.30 16 9 C -0.03 -1.28 5.87 -20.09 -0.12 -1.39 16 10 C -0.21 -7.69 9.43 22.66 0.21 -7.48 16 11 C -0.08 -3.24 10.01 22.18 0.22 -3.02 16 12 C -0.24 -11.31 7.17 22.76 0.16 -11.15 16 13 C 0.07 3.65 5.10 -21.32 -0.11 3.54 16 14 C -0.49 -27.65 9.57 23.47 0.22 -27.42 16 15 H 0.06 3.38 8.06 -2.91 -0.02 3.36 16 16 C 0.05 2.63 5.40 85.25 0.46 3.09 16 17 N -0.85 -47.14 13.93 21.82 0.30 -46.83 16 18 Si 0.96 42.83 24.52 68.60 1.68 44.51 16 19 H -0.25 -10.57 6.71 99.48 0.67 -9.91 16 20 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 21 H -0.25 -11.51 6.86 99.48 0.68 -10.83 16 22 C -0.20 -9.27 9.17 22.95 0.21 -9.06 16 23 C -0.15 -4.30 9.36 22.58 0.21 -4.09 16 24 H 0.07 0.67 7.66 -2.39 -0.02 0.65 16 25 H 0.07 0.67 7.66 -2.39 -0.02 0.65 16 26 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.16 2.76 6.28 -2.91 -0.02 2.74 16 28 H 0.13 4.43 6.19 -2.91 -0.02 4.41 16 29 H 0.14 4.09 6.18 -2.91 -0.02 4.07 16 30 H 0.13 4.27 8.06 -2.91 -0.02 4.25 16 31 H 0.10 4.60 4.72 -2.91 -0.01 4.58 16 32 H 0.29 14.57 8.30 -92.71 -0.77 13.80 16 33 H 0.10 4.75 6.19 -2.91 -0.02 4.73 16 34 H 0.15 3.93 6.19 -2.91 -0.02 3.91 16 Total: -1.00 -61.41 299.95 5.19 -56.23 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: 1.08 Total: 16.34 kcal Atomic # 6 Polarization: -63.99 SS G_CDS: 3.17 Total: -60.82 kcal Atomic # 7 Polarization: -47.14 SS G_CDS: 0.30 Total: -46.83 kcal Atomic # 8 Polarization: -6.86 SS G_CDS: -0.97 Total: -7.83 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 1.68 Total: 44.51 kcal Atomic # 17 Polarization: -1.51 SS G_CDS: -0.08 Total: -1.59 kcal Total: -61.41 5.19 -56.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205135211.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.238 kcal (2) G-P(sol) polarization free energy of solvation -61.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds