Wall clock time and date at job start Tue Mar 31 2020 05:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35898 * 117.00140 * 2 1 4 4 C 1.38889 * 119.97444 * 359.97438 * 3 2 1 5 5 C 1.38397 * 120.23276 * 179.97438 * 4 3 2 6 6 Cl 1.73601 * 119.90825 * 179.97438 * 5 4 3 7 7 C 1.38099 * 120.18066 * 0.02562 * 5 4 3 8 8 C 1.39635 * 119.94521 * 359.97438 * 7 5 4 9 9 C 1.47879 * 120.11573 * 180.02562 * 8 7 5 10 10 C 1.39154 * 120.33821 * 129.99644 * 9 8 7 11 11 C 1.38088 * 119.98797 * 179.97438 * 10 9 8 12 12 C 1.38923 * 120.67298 * 0.03083 * 11 10 9 13 13 C 1.36433 * 120.68327 * 359.96920 * 12 11 10 14 14 C 1.40759 * 119.98870 * 359.74898 * 13 12 11 15 15 C 1.40876 * 120.33003 * 180.25542 * 14 13 12 16 16 H 1.08001 * 119.99805 * 149.55617 * 15 14 13 17 17 C 1.40076 * 120.00282 * 329.56155 * 15 14 13 18 18 N 1.30771 * 119.99942 * 162.40844 * 17 15 14 19 19 Si 1.86794 * 119.99835 * 342.40390 * 17 15 14 20 20 H 1.48498 * 109.47299 * 95.38237 * 19 17 15 21 21 H 1.48507 * 109.47134 * 215.38457 * 19 17 15 22 22 H 1.48507 * 109.47321 * 335.38322 * 19 17 15 23 23 C 1.38411 * 119.97542 * 179.97438 * 3 2 1 24 24 H 1.08997 * 109.47158 * 300.00489 * 1 2 3 25 25 H 1.09003 * 109.47084 * 59.99996 * 1 2 3 26 26 H 1.08993 * 109.47142 * 180.02562 * 1 2 3 27 27 H 1.07998 * 119.87979 * 0.25909 * 4 3 2 28 28 H 1.07994 * 120.02974 * 179.97438 * 7 5 4 29 29 H 1.08002 * 120.00535 * 359.96087 * 10 9 8 30 30 H 1.08003 * 119.66458 * 179.97438 * 11 10 9 31 31 H 1.08002 * 119.65938 * 179.97438 * 12 11 10 32 32 H 1.08009 * 120.00970 * 180.02562 * 13 12 11 33 33 H 0.97002 * 119.99781 * 179.97438 * 18 17 15 34 34 H 1.07999 * 120.09029 * 0.03880 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2891 2.3753 -0.0005 5 6 1.9119 3.6113 0.0000 6 17 0.9576 5.0614 -0.0014 7 6 3.2904 3.6941 0.0005 8 6 4.0587 2.5281 0.0011 9 6 5.5351 2.6124 0.0022 10 6 6.2801 1.8818 0.9228 11 6 7.6584 1.9655 0.9171 12 6 8.3155 2.7751 -0.0010 13 6 7.6122 3.5032 -0.9157 14 6 6.2065 3.4345 -0.9390 15 6 5.4735 4.1791 -1.8839 16 1 4.5277 3.8065 -2.2489 17 6 5.9711 5.4026 -2.3501 18 7 5.4953 5.9255 -3.4503 19 14 7.3144 6.2874 -1.4003 20 1 8.6383 5.9424 -1.9777 21 1 7.1014 7.7542 -1.4919 22 1 7.2713 5.8689 0.0240 23 6 3.4283 1.2827 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 0.2108 2.3161 0.0033 28 1 3.7738 4.6598 0.0005 29 1 5.7804 1.2495 1.6418 30 1 8.2315 1.3964 1.6342 31 1 9.3941 2.8286 0.0094 32 1 8.1342 4.1287 -1.6248 33 1 5.8397 6.7730 -3.7729 34 1 4.0175 0.3776 0.0003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205135648.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:49 Heat of formation + Delta-G solvation = -8.260887 kcal Electronic energy + Delta-G solvation = -19808.740880 eV Core-core repulsion = 16697.007066 eV Total energy + Delta-G solvation = -3111.733814 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.81815 -38.22997 -36.92121 -35.78318 -33.75444 -31.66428 -30.65365 -29.88617 -28.24401 -27.06745 -25.24245 -22.68589 -21.94825 -21.09565 -19.90724 -17.74804 -17.43155 -16.04438 -15.76921 -15.57783 -15.48905 -14.77456 -14.27882 -13.93768 -13.85320 -13.43726 -12.93846 -12.81743 -12.62242 -12.13656 -11.95507 -11.63823 -11.60527 -11.41209 -10.96477 -10.85577 -10.75595 -10.62636 -10.57600 -10.21313 -9.85407 -9.68617 -9.24714 -8.50369 -7.85657 -7.69551 -7.45700 -7.05533 -4.56904 1.51222 1.82500 2.47956 2.56166 2.65475 3.04623 3.15569 3.25312 3.47251 3.89205 4.15696 4.42933 5.07967 5.18780 5.19647 5.29461 5.45911 5.48957 5.66867 5.85641 5.93044 5.93615 6.02340 6.20593 6.37421 6.51636 6.58732 6.73375 6.80283 7.04789 7.07310 7.11586 7.31030 7.56900 7.60767 7.69260 7.79051 8.00894 8.25564 8.54120 8.67407 9.94914 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.015056 B = 0.006578 C = 0.005053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.240614 B = 4255.357197 C = 5539.411932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.317 6.317 3 C 0.131 3.869 4 C -0.225 4.225 5 C 0.003 3.997 6 Cl -0.083 7.083 7 C -0.116 4.116 8 C 0.067 3.933 9 C -0.180 4.180 10 C -0.053 4.053 11 C -0.248 4.248 12 C -0.070 4.070 13 C -0.231 4.231 14 C 0.110 3.890 15 C -0.433 4.433 16 H 0.097 0.903 17 C 0.085 3.915 18 N -0.794 5.794 19 Si 0.907 3.093 20 H -0.269 1.269 21 H -0.289 1.289 22 H -0.242 1.242 23 C -0.156 4.156 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.095 0.905 27 H 0.128 0.872 28 H 0.141 0.859 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.287 0.713 34 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.318 -4.599 5.834 9.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.086 3.914 4 C -0.244 4.244 5 C -0.023 4.023 6 Cl -0.055 7.055 7 C -0.135 4.135 8 C 0.066 3.934 9 C -0.181 4.181 10 C -0.071 4.071 11 C -0.268 4.268 12 C -0.089 4.089 13 C -0.250 4.250 14 C 0.107 3.893 15 C -0.461 4.461 16 H 0.115 0.885 17 C -0.136 4.136 18 N -0.416 5.416 19 Si 0.733 3.267 20 H -0.195 1.195 21 H -0.216 1.216 22 H -0.165 1.165 23 C -0.174 4.174 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.114 0.886 27 H 0.146 0.854 28 H 0.159 0.841 29 H 0.116 0.884 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.120 0.880 33 H 0.098 0.902 34 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.396 -4.458 5.597 9.597 hybrid contribution 0.199 0.785 0.094 0.815 sum -6.197 -3.673 5.691 9.180 Atomic orbital electron populations 1.22995 0.79007 1.03403 1.01304 1.86066 1.20905 1.26923 1.89231 1.18624 0.91918 0.83346 0.97464 1.20832 0.99729 0.90731 1.13128 1.20464 0.91671 0.86376 1.03834 1.98332 1.72359 1.37751 1.97007 1.21247 0.90345 1.00360 1.01553 1.18422 0.93029 0.90329 0.91570 1.18406 0.89165 1.08933 1.01644 1.20697 0.93654 0.96173 0.96551 1.20292 0.93918 1.07897 1.04644 1.20432 0.97783 0.95845 0.94804 1.20786 0.94290 1.06455 1.03430 1.17604 0.91202 0.90577 0.89905 1.19521 1.06772 1.02620 1.17162 0.88502 1.26216 0.96211 0.97778 0.93394 1.69666 1.37699 1.17549 1.16721 0.86372 0.80213 0.77085 0.83043 1.19504 1.21615 1.16455 1.20640 0.90686 0.98483 1.07624 0.92874 0.92758 0.88617 0.85449 0.84110 0.88388 0.88661 0.88826 0.88036 0.90202 0.85199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.32 -4.83 10.49 -19.42 -0.20 -5.03 16 3 C 0.13 2.25 6.68 -39.28 -0.26 1.99 16 4 C -0.22 -3.72 8.82 -39.28 -0.35 -4.06 16 5 C 0.00 0.06 6.31 -39.57 -0.25 -0.19 16 6 Cl -0.08 -1.38 28.95 -51.86 -1.50 -2.88 16 7 C -0.12 -2.38 7.88 -39.11 -0.31 -2.68 16 8 C 0.07 1.39 4.93 -104.92 -0.52 0.87 16 9 C -0.18 -4.01 5.52 -104.23 -0.58 -4.58 16 10 C -0.05 -1.07 9.51 -39.30 -0.37 -1.44 16 11 C -0.25 -4.95 10.03 -39.38 -0.40 -5.34 16 12 C -0.07 -1.46 9.96 -39.98 -0.40 -1.86 16 13 C -0.23 -5.32 7.09 -39.28 -0.28 -5.60 16 14 C 0.11 2.67 5.09 -106.56 -0.54 2.13 16 15 C -0.43 -11.07 7.52 -37.90 -0.28 -11.35 16 16 H 0.10 2.66 7.04 -52.49 -0.37 2.29 16 17 C 0.08 2.12 5.41 -17.31 -0.09 2.03 16 18 N -0.79 -20.31 13.93 55.55 0.77 -19.54 16 19 Si 0.91 19.92 24.52 -169.99 -4.17 15.75 16 20 H -0.27 -5.74 6.72 56.52 0.38 -5.36 16 21 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.24 -5.43 6.85 56.52 0.39 -5.05 16 23 C -0.16 -2.92 9.46 -39.01 -0.37 -3.29 16 24 H 0.05 0.51 7.65 -51.93 -0.40 0.11 16 25 H 0.05 0.54 7.66 -51.93 -0.40 0.15 16 26 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.13 1.77 6.28 -52.49 -0.33 1.44 16 28 H 0.14 3.06 7.32 -52.49 -0.38 2.67 16 29 H 0.10 1.76 8.04 -52.49 -0.42 1.34 16 30 H 0.10 1.65 8.06 -52.48 -0.42 1.22 16 31 H 0.09 1.69 8.06 -52.49 -0.42 1.26 16 32 H 0.10 2.33 4.77 -52.48 -0.25 2.08 16 33 H 0.29 6.67 8.29 -40.82 -0.34 6.33 16 34 H 0.13 2.31 8.04 -52.49 -0.42 1.89 16 LS Contribution 301.94 15.07 4.55 4.55 Total: -1.00 -26.34 301.94 -7.96 -34.31 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -3.41 Total: 4.95 kcal Atomic # 6 Polarization: -28.10 SS G_CDS: -4.00 Total: -32.11 kcal Atomic # 7 Polarization: -20.31 SS G_CDS: 0.77 Total: -19.54 kcal Atomic # 8 Polarization: -4.83 SS G_CDS: -0.20 Total: -5.03 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -4.17 Total: 15.75 kcal Atomic # 17 Polarization: -1.38 SS G_CDS: -1.50 Total: -2.88 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -26.34 -7.96 -34.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205135648.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.046 kcal (2) G-P(sol) polarization free energy of solvation -26.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds