Wall clock time and date at job start Tue Mar 31 2020 05:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35898 * 117.00140 * 2 1 4 4 C 1.38889 * 119.97444 * 359.97438 * 3 2 1 5 5 C 1.38397 * 120.23276 * 179.97438 * 4 3 2 6 6 Cl 1.73601 * 119.90825 * 179.97438 * 5 4 3 7 7 C 1.38099 * 120.18066 * 0.02562 * 5 4 3 8 8 C 1.39635 * 119.94521 * 359.97438 * 7 5 4 9 9 C 1.47879 * 120.11573 * 180.02562 * 8 7 5 10 10 C 1.39154 * 120.33821 * 129.99644 * 9 8 7 11 11 C 1.38088 * 119.98797 * 179.97438 * 10 9 8 12 12 C 1.38923 * 120.67298 * 0.03083 * 11 10 9 13 13 C 1.36433 * 120.68327 * 359.96920 * 12 11 10 14 14 C 1.40759 * 119.98870 * 359.74898 * 13 12 11 15 15 C 1.40876 * 120.33003 * 180.25542 * 14 13 12 16 16 H 1.08001 * 119.99805 * 149.55617 * 15 14 13 17 17 C 1.40076 * 120.00282 * 329.56155 * 15 14 13 18 18 N 1.30771 * 119.99942 * 162.40844 * 17 15 14 19 19 Si 1.86794 * 119.99835 * 342.40390 * 17 15 14 20 20 H 1.48498 * 109.47299 * 95.38237 * 19 17 15 21 21 H 1.48507 * 109.47134 * 215.38457 * 19 17 15 22 22 H 1.48507 * 109.47321 * 335.38322 * 19 17 15 23 23 C 1.38411 * 119.97542 * 179.97438 * 3 2 1 24 24 H 1.08997 * 109.47158 * 300.00489 * 1 2 3 25 25 H 1.09003 * 109.47084 * 59.99996 * 1 2 3 26 26 H 1.08993 * 109.47142 * 180.02562 * 1 2 3 27 27 H 1.07998 * 119.87979 * 0.25909 * 4 3 2 28 28 H 1.07994 * 120.02974 * 179.97438 * 7 5 4 29 29 H 1.08002 * 120.00535 * 359.96087 * 10 9 8 30 30 H 1.08003 * 119.66458 * 179.97438 * 11 10 9 31 31 H 1.08002 * 119.65938 * 179.97438 * 12 11 10 32 32 H 1.08009 * 120.00970 * 180.02562 * 13 12 11 33 33 H 0.97002 * 119.99781 * 179.97438 * 18 17 15 34 34 H 1.07999 * 120.09029 * 0.03880 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2891 2.3753 -0.0005 5 6 1.9119 3.6113 0.0000 6 17 0.9576 5.0614 -0.0014 7 6 3.2904 3.6941 0.0005 8 6 4.0587 2.5281 0.0011 9 6 5.5351 2.6124 0.0022 10 6 6.2801 1.8818 0.9228 11 6 7.6584 1.9655 0.9171 12 6 8.3155 2.7751 -0.0010 13 6 7.6122 3.5032 -0.9157 14 6 6.2065 3.4345 -0.9390 15 6 5.4735 4.1791 -1.8839 16 1 4.5277 3.8065 -2.2489 17 6 5.9711 5.4026 -2.3501 18 7 5.4953 5.9255 -3.4503 19 14 7.3144 6.2874 -1.4003 20 1 8.6383 5.9424 -1.9777 21 1 7.1014 7.7542 -1.4919 22 1 7.2713 5.8689 0.0240 23 6 3.4283 1.2827 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 0.2108 2.3161 0.0033 28 1 3.7738 4.6598 0.0005 29 1 5.7804 1.2495 1.6418 30 1 8.2315 1.3964 1.6342 31 1 9.3941 2.8286 0.0094 32 1 8.1342 4.1287 -1.6248 33 1 5.8397 6.7730 -3.7729 34 1 4.0175 0.3776 0.0003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205135648.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:49 Heat of formation + Delta-G solvation = -21.109568 kcal Electronic energy + Delta-G solvation = -19809.298041 eV Core-core repulsion = 16697.007066 eV Total energy + Delta-G solvation = -3112.290975 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.16996 -39.78185 -38.33197 -37.19313 -35.55497 -33.20770 -32.36072 -31.28408 -29.79373 -28.11564 -26.97615 -24.20950 -23.43203 -22.75217 -21.44503 -19.38212 -18.97306 -17.44623 -17.30393 -16.94738 -16.66344 -16.38098 -15.84836 -15.55840 -15.44485 -14.72639 -14.58215 -14.29039 -14.14207 -13.82088 -13.39595 -13.04489 -12.90960 -12.79924 -12.66969 -12.51608 -12.20734 -12.12028 -11.97484 -11.68203 -11.54447 -11.38119 -10.99716 -10.01925 -9.47711 -9.24249 -9.05176 -8.88746 -6.43897 0.02380 0.35258 0.84009 0.94703 1.11726 1.26417 1.41384 1.48442 2.10962 2.33571 2.61342 2.71064 3.53623 3.82554 3.99479 4.19279 4.31099 4.33924 4.41826 4.42201 4.43007 4.52553 4.69242 4.76374 4.83078 4.90106 5.08423 5.13608 5.24315 5.33345 5.52572 5.56786 5.66244 5.90080 5.96330 6.04136 6.25720 6.39547 6.42499 6.75672 6.83631 8.17561 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.015056 B = 0.006578 C = 0.005053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.240614 B = 4255.357197 C = 5539.411932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.326 6.326 3 C 0.139 3.861 4 C -0.213 4.213 5 C -0.002 4.002 6 Cl -0.070 7.070 7 C -0.136 4.136 8 C 0.045 3.955 9 C -0.183 4.183 10 C -0.061 4.061 11 C -0.231 4.231 12 C -0.077 4.077 13 C -0.248 4.248 14 C 0.089 3.911 15 C -0.458 4.458 16 H 0.061 0.939 17 C 0.052 3.948 18 N -0.840 5.840 19 Si 0.955 3.045 20 H -0.258 1.258 21 H -0.281 1.281 22 H -0.252 1.252 23 C -0.161 4.161 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.126 0.874 27 H 0.159 0.841 28 H 0.116 0.884 29 H 0.125 0.875 30 H 0.133 0.867 31 H 0.126 0.874 32 H 0.097 0.903 33 H 0.293 0.707 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.459 -6.417 7.793 11.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.239 6.239 3 C 0.094 3.906 4 C -0.233 4.233 5 C -0.029 4.029 6 Cl -0.042 7.042 7 C -0.155 4.155 8 C 0.044 3.956 9 C -0.184 4.184 10 C -0.079 4.079 11 C -0.249 4.249 12 C -0.095 4.095 13 C -0.268 4.268 14 C 0.086 3.914 15 C -0.487 4.487 16 H 0.079 0.921 17 C -0.164 4.164 18 N -0.466 5.466 19 Si 0.779 3.221 20 H -0.183 1.183 21 H -0.207 1.207 22 H -0.175 1.175 23 C -0.180 4.180 24 H 0.086 0.914 25 H 0.079 0.921 26 H 0.144 0.856 27 H 0.177 0.823 28 H 0.134 0.866 29 H 0.143 0.857 30 H 0.151 0.849 31 H 0.144 0.856 32 H 0.115 0.885 33 H 0.104 0.896 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -6.544 -6.289 7.558 11.811 hybrid contribution 0.112 1.092 -0.349 1.152 sum -6.432 -5.198 7.209 10.971 Atomic orbital electron populations 1.23406 0.76297 1.05874 1.02313 1.86070 1.23619 1.25580 1.88680 1.18615 0.91564 0.84379 0.96075 1.21125 1.01269 0.89661 1.11197 1.20561 0.91144 0.87685 1.03498 1.98331 1.71672 1.37227 1.96928 1.21089 0.91537 0.99374 1.03471 1.18443 0.92593 0.91267 0.93272 1.18770 0.90432 1.08040 1.01204 1.21068 0.94212 0.96182 0.96465 1.20813 0.93974 1.06243 1.03904 1.20828 0.99576 0.94996 0.94053 1.20907 0.93936 1.07423 1.04485 1.17814 0.92043 0.91234 0.90305 1.19309 1.06114 1.03999 1.19274 0.92135 1.26766 0.97810 0.97974 0.93827 1.69700 1.39982 1.18645 1.18238 0.85631 0.78713 0.76507 0.81214 1.18296 1.20746 1.17537 1.20688 0.91841 0.97821 1.07644 0.91433 0.92069 0.85627 0.82342 0.86631 0.85670 0.84938 0.85561 0.88511 0.89644 0.84439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.38 16 2 O -0.33 -9.00 10.49 -92.41 -0.97 -9.97 16 3 C 0.14 4.55 6.68 22.47 0.15 4.70 16 4 C -0.21 -6.70 8.82 22.46 0.20 -6.50 16 5 C 0.00 -0.08 6.31 22.27 0.14 0.06 16 6 Cl -0.07 -2.32 28.95 -2.72 -0.08 -2.40 16 7 C -0.14 -5.75 7.88 22.57 0.18 -5.57 16 8 C 0.04 1.88 4.93 -20.06 -0.10 1.78 16 9 C -0.18 -8.20 5.52 -19.61 -0.11 -8.31 16 10 C -0.06 -2.37 9.51 22.45 0.21 -2.15 16 11 C -0.23 -8.37 10.03 22.40 0.22 -8.15 16 12 C -0.08 -2.99 9.96 22.01 0.22 -2.77 16 13 C -0.25 -11.40 7.09 22.46 0.16 -11.24 16 14 C 0.09 4.40 5.09 -21.12 -0.11 4.30 16 15 C -0.46 -24.84 7.52 23.36 0.18 -24.66 16 16 H 0.06 3.61 7.04 -2.91 -0.02 3.58 16 17 C 0.05 2.73 5.41 85.30 0.46 3.19 16 18 N -0.84 -45.45 13.93 21.85 0.30 -45.15 16 19 Si 0.96 42.17 24.52 68.60 1.68 43.85 16 20 H -0.26 -10.74 6.72 99.48 0.67 -10.07 16 21 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 22 H -0.25 -11.34 6.85 99.48 0.68 -10.66 16 23 C -0.16 -5.94 9.46 22.64 0.21 -5.73 16 24 H 0.07 1.01 7.65 -2.39 -0.02 1.00 16 25 H 0.06 1.01 7.66 -2.39 -0.02 0.99 16 26 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.16 3.91 6.28 -2.91 -0.02 3.89 16 28 H 0.12 5.40 7.32 -2.91 -0.02 5.38 16 29 H 0.13 4.11 8.04 -2.91 -0.02 4.09 16 30 H 0.13 3.86 8.06 -2.91 -0.02 3.84 16 31 H 0.13 4.07 8.06 -2.91 -0.02 4.04 16 32 H 0.10 4.46 4.77 -2.91 -0.01 4.44 16 33 H 0.29 14.32 8.29 -92.71 -0.77 13.56 16 34 H 0.14 4.74 8.04 -2.91 -0.02 4.71 16 Total: -1.00 -59.32 301.94 5.13 -54.19 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: 1.06 Total: 19.15 kcal Atomic # 6 Polarization: -62.80 SS G_CDS: 3.13 Total: -59.67 kcal Atomic # 7 Polarization: -45.45 SS G_CDS: 0.30 Total: -45.15 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: -0.97 Total: -9.97 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 1.68 Total: 43.85 kcal Atomic # 17 Polarization: -2.32 SS G_CDS: -0.08 Total: -2.40 kcal Total: -59.32 5.13 -54.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205135648.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.081 kcal (2) G-P(sol) polarization free energy of solvation -59.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds