Wall clock time and date at job start Tue Mar 31 2020 06:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50702 * 109.47201 * 2 1 4 4 C 1.37987 * 119.94403 * 99.99960 * 3 2 1 5 5 C 1.39391 * 119.88525 * 179.97438 * 4 3 2 6 6 C 1.48278 * 120.11061 * 179.97438 * 5 4 3 7 7 C 1.40046 * 119.98966 * 4.99732 * 6 5 4 8 8 N 1.32176 * 120.29517 * 180.28045 * 7 6 5 9 9 C 1.31892 * 120.28033 * 359.48410 * 8 7 6 10 10 C 1.40814 * 119.97198 * 0.51793 * 9 8 7 11 11 C 1.41324 * 120.14831 * 179.72222 * 10 9 8 12 12 H 1.08001 * 119.99832 * 353.74970 * 11 10 9 13 13 C 1.40048 * 120.00005 * 173.75191 * 11 10 9 14 14 N 1.30722 * 120.00113 * 6.29646 * 13 11 10 15 15 Si 1.86809 * 119.99612 * 186.29653 * 13 11 10 16 16 H 1.48495 * 109.47264 * 60.00099 * 15 13 11 17 17 H 1.48497 * 109.46700 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.46957 * 299.99946 * 15 13 11 19 19 N 1.32529 * 119.98536 * 185.02223 * 6 5 4 20 20 C 1.39428 * 119.77415 * 0.25443 * 5 4 3 21 21 C 1.37951 * 119.88783 * 359.46834 * 20 5 4 22 22 C 1.38441 * 119.94183 * 279.97715 * 3 2 1 23 23 Cl 1.73598 * 119.88892 * 0.02562 * 22 3 2 24 24 H 1.09000 * 109.47136 * 59.99976 * 1 2 3 25 25 H 1.09001 * 109.47344 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47206 * 300.00299 * 1 2 3 27 27 H 1.09000 * 109.47206 * 239.99701 * 2 1 3 28 28 H 1.09000 * 109.47136 * 120.00024 * 2 1 3 29 29 H 1.07999 * 120.05755 * 359.95820 * 4 3 2 30 30 H 1.07998 * 119.85029 * 0.02562 * 7 6 5 31 31 H 1.08004 * 120.00710 * 180.25961 * 9 8 7 32 32 H 0.97006 * 120.00033 * 180.02562 * 14 13 11 33 33 H 1.08000 * 120.05542 * 179.72709 * 20 5 4 34 34 H 1.07995 * 119.94417 * 180.27822 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4576 2.0010 1.1775 5 6 2.9225 3.3151 1.1760 6 6 3.3803 3.9436 2.4386 7 6 3.4449 3.1858 3.6145 8 7 3.8468 3.7414 4.7445 9 6 4.2001 5.0118 4.7721 10 6 4.1395 5.7846 3.5966 11 6 4.5116 7.1477 3.6232 12 1 4.7463 7.6251 4.5631 13 6 4.5761 7.8794 2.4308 14 7 4.1749 7.3393 1.3100 15 14 5.2356 9.6271 2.4421 16 1 6.6354 9.6249 2.9378 17 1 5.1989 10.1788 1.0639 18 1 4.3962 10.4672 3.3336 19 7 3.7276 5.2225 2.4539 20 6 2.9502 4.0384 -0.0157 21 6 2.5281 3.4473 -1.1885 22 6 2.0667 2.1416 -1.1815 23 17 1.5301 1.4059 -2.6595 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.4301 1.4380 2.0987 30 1 3.1612 2.1439 3.5988 31 1 4.5318 5.4602 5.6970 32 1 4.2199 7.8460 0.4840 33 1 3.3054 5.0583 -0.0213 34 1 2.5534 4.0052 -2.1128 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205800131.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:10 Heat of formation + Delta-G solvation = 40.714558 kcal Electronic energy + Delta-G solvation = -19479.743102 eV Core-core repulsion = 16402.425773 eV Total energy + Delta-G solvation = -3077.317329 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.57965 -38.56141 -36.23804 -34.22395 -34.10388 -32.36924 -31.32981 -29.50848 -28.57429 -26.13408 -23.88364 -23.40155 -22.48247 -21.21664 -19.92201 -17.71235 -16.63621 -16.05121 -15.51479 -15.33387 -14.97052 -14.70020 -14.05547 -13.62033 -13.40022 -13.26772 -13.09254 -12.97903 -12.21475 -11.85649 -11.75650 -11.52185 -11.45634 -11.30988 -11.25382 -11.15808 -10.85707 -10.78157 -10.46849 -10.25130 -9.93181 -9.64499 -9.41486 -8.57034 -8.42644 -7.57594 -7.47330 -6.64921 -4.80430 1.18435 1.67423 2.35397 2.52957 2.89826 2.96574 2.98051 3.10309 3.76621 4.06618 4.59709 4.79955 4.93790 5.18060 5.29590 5.41915 5.59019 5.61803 5.67693 5.75868 5.89165 5.93678 5.96793 6.06279 6.14922 6.24504 6.28244 6.47902 6.58960 6.66104 6.84368 6.87638 6.99410 7.17917 7.25078 7.52275 7.92295 8.28938 8.53509 9.10896 9.67352 10.01543 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.020767 B = 0.004575 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.972258 B = 6118.617839 C = 7349.063570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.083 4.083 3 C -0.084 4.084 4 C -0.096 4.096 5 C -0.007 4.007 6 C 0.132 3.868 7 C -0.105 4.105 8 N -0.430 5.430 9 C -0.059 4.059 10 C 0.208 3.792 11 C -0.411 4.411 12 H 0.092 0.908 13 C 0.068 3.932 14 N -0.712 5.712 15 Si 0.914 3.086 16 H -0.262 1.262 17 H -0.275 1.275 18 H -0.263 1.263 19 N -0.441 5.441 20 C -0.072 4.072 21 C -0.118 4.118 22 C -0.038 4.038 23 Cl -0.086 7.086 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.132 0.868 30 H 0.129 0.871 31 H 0.135 0.865 32 H 0.278 0.722 33 H 0.159 0.841 34 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.849 -7.019 -6.437 10.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.120 4.120 3 C -0.085 4.085 4 C -0.115 4.115 5 C -0.009 4.009 6 C -0.015 4.015 7 C -0.264 4.264 8 N -0.141 5.141 9 C -0.229 4.229 10 C 0.081 3.919 11 C -0.443 4.443 12 H 0.110 0.890 13 C -0.159 4.159 14 N -0.333 5.333 15 Si 0.738 3.262 16 H -0.187 1.187 17 H -0.200 1.200 18 H -0.187 1.187 19 N -0.158 5.158 20 C -0.091 4.091 21 C -0.137 4.137 22 C -0.065 4.065 23 Cl -0.058 7.058 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.150 0.850 30 H 0.146 0.854 31 H 0.153 0.847 32 H 0.089 0.911 33 H 0.176 0.824 34 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.935 -7.030 -6.800 10.542 hybrid contribution 0.273 0.767 -0.182 0.834 sum -3.663 -6.263 -6.981 10.069 Atomic orbital electron populations 1.21740 0.94727 1.01485 1.02472 1.20513 0.96333 0.92191 1.02952 1.19511 1.00924 0.96550 0.91529 1.21083 0.98801 0.94560 0.97101 1.18812 0.96743 0.92607 0.92749 1.20595 0.96342 0.92745 0.91788 1.22515 1.14089 0.99924 0.89849 1.67684 1.06403 1.12193 1.27799 1.23244 1.09518 0.90977 0.99154 1.19348 0.90363 0.94563 0.87615 1.19621 1.36960 0.92992 0.94715 0.89025 1.26114 0.94078 1.00580 0.95108 1.70012 1.27539 1.36457 0.99284 0.86259 0.80418 0.81005 0.78541 1.18684 1.20019 1.18703 1.69508 1.12838 1.06738 1.26720 1.21649 0.95794 1.01535 0.90111 1.21010 1.00366 0.93005 0.99305 1.20797 1.04782 0.94413 0.86486 1.98315 1.88984 1.83163 1.35288 0.92323 0.92587 0.92491 0.90771 0.90866 0.84984 0.85401 0.84746 0.91051 0.82393 0.85368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.84 37.15 0.37 -1.24 16 2 C -0.08 -0.98 5.51 -27.89 -0.15 -1.14 16 3 C -0.08 -1.26 5.13 -104.64 -0.54 -1.79 16 4 C -0.10 -1.61 9.04 -39.24 -0.35 -1.97 16 5 C -0.01 -0.15 5.87 -104.90 -0.62 -0.76 16 6 C 0.13 3.11 6.73 -82.76 -0.56 2.55 16 7 C -0.11 -2.41 10.61 -16.73 -0.18 -2.59 16 8 N -0.43 -10.43 10.47 -12.05 -0.13 -10.55 16 9 C -0.06 -1.44 10.97 -16.55 -0.18 -1.62 16 10 C 0.21 5.40 6.54 -84.84 -0.55 4.85 16 11 C -0.41 -10.17 9.15 -37.73 -0.35 -10.52 16 12 H 0.09 2.07 7.86 -52.49 -0.41 1.66 16 13 C 0.07 1.58 5.49 -17.35 -0.10 1.49 16 14 N -0.71 -17.22 11.51 55.55 0.64 -16.58 16 15 Si 0.91 17.19 29.57 -169.99 -5.03 12.16 16 16 H -0.26 -4.91 7.11 56.52 0.40 -4.50 16 17 H -0.28 -5.07 7.11 56.52 0.40 -4.67 16 18 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 19 N -0.44 -11.42 7.18 -7.51 -0.05 -11.47 16 20 C -0.07 -1.38 9.58 -39.24 -0.38 -1.76 16 21 C -0.12 -1.92 9.81 -39.59 -0.39 -2.30 16 22 C -0.04 -0.58 6.31 -39.41 -0.25 -0.83 16 23 Cl -0.09 -1.12 26.59 -51.86 -1.38 -2.50 16 24 H 0.06 0.67 7.25 -51.93 -0.38 0.29 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.07 0.84 7.34 -51.93 -0.38 0.46 16 28 H 0.07 0.79 8.00 -51.93 -0.42 0.37 16 29 H 0.13 2.01 6.20 -52.49 -0.33 1.68 16 30 H 0.13 2.52 6.22 -52.49 -0.33 2.20 16 31 H 0.14 2.95 8.06 -52.48 -0.42 2.53 16 32 H 0.28 6.07 8.29 -40.82 -0.34 5.74 16 33 H 0.16 3.35 7.56 -52.49 -0.40 2.95 16 34 H 0.13 1.82 8.06 -52.49 -0.42 1.39 16 LS Contribution 308.35 15.07 4.65 4.65 Total: -1.00 -27.01 308.35 -8.98 -35.98 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -3.46 Total: 5.94 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: -4.22 Total: -17.62 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 0.46 Total: -38.60 kcal Atomic # 14 Polarization: 17.19 SS G_CDS: -5.03 Total: 12.16 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -1.38 Total: -2.50 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -27.01 -8.98 -35.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205800131.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.699 kcal (2) G-P(sol) polarization free energy of solvation -27.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds