Wall clock time and date at job start Tue Mar 31 2020 06:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50702 * 109.47201 * 2 1 4 4 C 1.37987 * 119.94403 * 99.99960 * 3 2 1 5 5 C 1.39391 * 119.88525 * 179.97438 * 4 3 2 6 6 C 1.48278 * 120.11061 * 179.97438 * 5 4 3 7 7 C 1.40046 * 119.98966 * 4.99732 * 6 5 4 8 8 N 1.32176 * 120.29517 * 180.28045 * 7 6 5 9 9 C 1.31892 * 120.28033 * 359.48410 * 8 7 6 10 10 C 1.40814 * 119.97198 * 0.51793 * 9 8 7 11 11 C 1.41324 * 120.14831 * 179.72222 * 10 9 8 12 12 H 1.08001 * 119.99832 * 353.74970 * 11 10 9 13 13 C 1.40048 * 120.00005 * 173.75191 * 11 10 9 14 14 N 1.30722 * 120.00113 * 6.29646 * 13 11 10 15 15 Si 1.86809 * 119.99612 * 186.29653 * 13 11 10 16 16 H 1.48495 * 109.47264 * 60.00099 * 15 13 11 17 17 H 1.48497 * 109.46700 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.46957 * 299.99946 * 15 13 11 19 19 N 1.32529 * 119.98536 * 185.02223 * 6 5 4 20 20 C 1.39428 * 119.77415 * 0.25443 * 5 4 3 21 21 C 1.37951 * 119.88783 * 359.46834 * 20 5 4 22 22 C 1.38441 * 119.94183 * 279.97715 * 3 2 1 23 23 Cl 1.73598 * 119.88892 * 0.02562 * 22 3 2 24 24 H 1.09000 * 109.47136 * 59.99976 * 1 2 3 25 25 H 1.09001 * 109.47344 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47206 * 300.00299 * 1 2 3 27 27 H 1.09000 * 109.47206 * 239.99701 * 2 1 3 28 28 H 1.09000 * 109.47136 * 120.00024 * 2 1 3 29 29 H 1.07999 * 120.05755 * 359.95820 * 4 3 2 30 30 H 1.07998 * 119.85029 * 0.02562 * 7 6 5 31 31 H 1.08004 * 120.00710 * 180.25961 * 9 8 7 32 32 H 0.97006 * 120.00033 * 180.02562 * 14 13 11 33 33 H 1.08000 * 120.05542 * 179.72709 * 20 5 4 34 34 H 1.07995 * 119.94417 * 180.27822 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4576 2.0010 1.1775 5 6 2.9225 3.3151 1.1760 6 6 3.3803 3.9436 2.4386 7 6 3.4449 3.1858 3.6145 8 7 3.8468 3.7414 4.7445 9 6 4.2001 5.0118 4.7721 10 6 4.1395 5.7846 3.5966 11 6 4.5116 7.1477 3.6232 12 1 4.7463 7.6251 4.5631 13 6 4.5761 7.8794 2.4308 14 7 4.1749 7.3393 1.3100 15 14 5.2356 9.6271 2.4421 16 1 6.6354 9.6249 2.9378 17 1 5.1989 10.1788 1.0639 18 1 4.3962 10.4672 3.3336 19 7 3.7276 5.2225 2.4539 20 6 2.9502 4.0384 -0.0157 21 6 2.5281 3.4473 -1.1885 22 6 2.0667 2.1416 -1.1815 23 17 1.5301 1.4059 -2.6595 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.4301 1.4380 2.0987 30 1 3.1612 2.1439 3.5988 31 1 4.5318 5.4602 5.6970 32 1 4.2199 7.8460 0.4840 33 1 3.3054 5.0583 -0.0213 34 1 2.5534 4.0052 -2.1128 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205800131.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:09 Heat of formation + Delta-G solvation = 27.714225 kcal Electronic energy + Delta-G solvation = -19480.306839 eV Core-core repulsion = 16402.425773 eV Total energy + Delta-G solvation = -3077.881065 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.16948 -40.07975 -37.42993 -35.96803 -35.34746 -34.00251 -33.00891 -30.91262 -29.95936 -27.92755 -25.29065 -24.79977 -24.05053 -22.73687 -21.30106 -19.49601 -18.07414 -17.65353 -17.04797 -17.03608 -16.37322 -16.19306 -15.34418 -15.13297 -14.73981 -14.66016 -14.45248 -14.31201 -13.47067 -13.36705 -13.21489 -13.02241 -12.87745 -12.65212 -12.56127 -12.48894 -12.29340 -12.03054 -11.73806 -11.69035 -11.53972 -11.43136 -11.06920 -10.16693 -9.79009 -9.39743 -9.06695 -8.41939 -6.67995 -0.29624 0.35867 0.83154 1.13858 1.14791 1.41508 1.53282 1.55486 2.18407 2.58701 2.88740 3.45491 3.76890 3.81349 3.83016 4.01493 4.23495 4.28513 4.43933 4.50404 4.51815 4.55200 4.64812 4.79071 4.94284 5.02720 5.03840 5.10814 5.15372 5.21303 5.32860 5.42451 5.46356 5.66873 5.73767 5.86392 6.10121 6.46066 6.68891 7.25874 7.83684 8.28500 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.020767 B = 0.004575 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.972258 B = 6118.617839 C = 7349.063570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.082 4.082 3 C -0.077 4.077 4 C -0.090 4.090 5 C -0.038 4.038 6 C 0.124 3.876 7 C -0.115 4.115 8 N -0.438 5.438 9 C -0.082 4.082 10 C 0.176 3.824 11 C -0.437 4.437 12 H 0.103 0.897 13 C 0.025 3.975 14 N -0.741 5.741 15 Si 0.993 3.007 16 H -0.258 1.258 17 H -0.268 1.268 18 H -0.256 1.256 19 N -0.468 5.468 20 C -0.088 4.088 21 C -0.115 4.115 22 C -0.034 4.034 23 Cl -0.059 7.059 24 H 0.052 0.948 25 H 0.078 0.922 26 H 0.050 0.950 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.148 0.852 30 H 0.159 0.841 31 H 0.150 0.850 32 H 0.286 0.714 33 H 0.130 0.870 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.406 -8.088 -7.637 11.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 C -0.078 4.078 4 C -0.109 4.109 5 C -0.040 4.040 6 C -0.023 4.023 7 C -0.273 4.273 8 N -0.149 5.149 9 C -0.251 4.251 10 C 0.050 3.950 11 C -0.468 4.468 12 H 0.121 0.879 13 C -0.199 4.199 14 N -0.362 5.362 15 Si 0.812 3.188 16 H -0.183 1.183 17 H -0.192 1.192 18 H -0.180 1.180 19 N -0.186 5.186 20 C -0.107 4.107 21 C -0.133 4.133 22 C -0.061 4.061 23 Cl -0.030 7.030 24 H 0.071 0.929 25 H 0.097 0.903 26 H 0.069 0.931 27 H 0.103 0.897 28 H 0.107 0.893 29 H 0.165 0.835 30 H 0.176 0.824 31 H 0.167 0.833 32 H 0.096 0.904 33 H 0.148 0.852 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -4.498 -8.114 -7.987 12.242 hybrid contribution 0.363 0.949 0.046 1.017 sum -4.135 -7.165 -7.941 11.467 Atomic orbital electron populations 1.21734 0.93796 1.02850 1.01876 1.20627 0.96988 0.90001 1.04318 1.19865 0.99319 0.98001 0.90590 1.21212 0.97979 0.93197 0.98556 1.18826 0.99334 0.94216 0.91597 1.21176 0.95268 0.92270 0.93598 1.23006 1.13690 1.01240 0.89404 1.67700 1.06611 1.12129 1.28499 1.23444 1.10801 0.91338 0.99539 1.19814 0.91153 0.95667 0.88343 1.20056 1.37524 0.93168 0.96072 0.87861 1.27050 0.93877 1.04769 0.94210 1.70108 1.27799 1.38265 1.00019 0.85090 0.79628 0.75253 0.78821 1.18258 1.19229 1.18029 1.69517 1.13966 1.08122 1.27023 1.21436 0.97348 1.00639 0.91302 1.21108 0.99663 0.93704 0.98851 1.20930 1.03389 0.94016 0.87801 1.98328 1.88522 1.82558 1.33556 0.92926 0.90304 0.93114 0.89705 0.89283 0.83473 0.82363 0.83253 0.90357 0.85216 0.83565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 9.84 71.98 0.71 -2.00 16 2 C -0.08 -1.67 5.51 29.85 0.16 -1.51 16 3 C -0.08 -2.12 5.13 -19.87 -0.10 -2.22 16 4 C -0.09 -2.91 9.04 22.49 0.20 -2.71 16 5 C -0.04 -1.55 5.87 -20.04 -0.12 -1.67 16 6 C 0.12 6.01 6.73 42.15 0.28 6.29 16 7 C -0.11 -5.31 10.61 85.08 0.90 -4.40 16 8 N -0.44 -21.65 10.47 -192.05 -2.01 -23.66 16 9 C -0.08 -4.17 10.97 85.31 0.94 -3.23 16 10 C 0.18 9.56 6.54 40.23 0.26 9.82 16 11 C -0.44 -22.29 9.15 23.47 0.21 -22.07 16 12 H 0.10 4.79 7.86 -2.91 -0.02 4.76 16 13 C 0.02 1.18 5.49 85.30 0.47 1.65 16 14 N -0.74 -37.00 11.51 21.84 0.25 -36.75 16 15 Si 0.99 35.31 29.57 68.60 2.03 37.34 16 16 H -0.26 -8.96 7.11 99.48 0.71 -8.25 16 17 H -0.27 -9.10 7.11 99.48 0.71 -8.40 16 18 H -0.26 -8.79 7.11 99.48 0.71 -8.08 16 19 N -0.47 -25.36 7.18 -177.66 -1.27 -26.63 16 20 C -0.09 -3.47 9.58 22.49 0.22 -3.25 16 21 C -0.11 -3.64 9.81 22.26 0.22 -3.42 16 22 C -0.03 -0.97 6.31 22.38 0.14 -0.83 16 23 Cl -0.06 -1.36 26.59 -2.72 -0.07 -1.43 16 24 H 0.05 1.04 7.25 -2.39 -0.02 1.02 16 25 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.08 1.59 7.34 -2.39 -0.02 1.57 16 28 H 0.09 1.58 8.00 -2.39 -0.02 1.56 16 29 H 0.15 4.19 6.20 -2.91 -0.02 4.17 16 30 H 0.16 6.10 6.22 -2.91 -0.02 6.08 16 31 H 0.15 6.79 8.06 -2.91 -0.02 6.77 16 32 H 0.29 12.81 8.29 -92.70 -0.77 12.04 16 33 H 0.13 5.84 7.56 -2.91 -0.02 5.82 16 34 H 0.15 3.99 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -60.11 308.35 4.55 -55.56 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: 1.13 Total: 25.13 kcal Atomic # 6 Polarization: -34.05 SS G_CDS: 4.50 Total: -29.55 kcal Atomic # 7 Polarization: -84.01 SS G_CDS: -3.03 Total: -87.04 kcal Atomic # 14 Polarization: 35.31 SS G_CDS: 2.03 Total: 37.34 kcal Atomic # 17 Polarization: -1.36 SS G_CDS: -0.07 Total: -1.43 kcal Total: -60.11 4.55 -55.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205800131.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.270 kcal (2) G-P(sol) polarization free energy of solvation -60.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds