Wall clock time and date at job start Tue Mar 31 2020 06:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50697 * 109.47239 * 2 1 4 4 C 1.37898 * 119.93587 * 99.72636 * 3 2 1 5 5 C 1.39663 * 119.86454 * 179.73198 * 4 3 2 6 6 C 1.47900 * 120.13524 * 180.27021 * 5 4 3 7 7 C 1.40445 * 120.79282 * 0.02562 * 6 5 4 8 8 N 1.31586 * 119.09104 * 179.71252 * 7 6 5 9 9 C 1.33651 * 120.83043 * 0.57014 * 8 7 6 10 10 C 1.41069 * 119.13267 * 179.67723 * 9 8 7 11 11 H 1.07994 * 120.00047 * 180.02562 * 10 9 8 12 12 C 1.40138 * 119.99778 * 0.02562 * 10 9 8 13 13 N 1.30662 * 119.99960 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00033 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47018 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.47388 * 119.99642 * 14 12 10 17 17 H 1.48496 * 109.47213 * 239.99680 * 14 12 10 18 18 N 1.33653 * 121.73596 * 359.70107 * 9 8 7 19 19 C 1.31585 * 120.83397 * 359.97438 * 18 9 8 20 20 C 1.39703 * 119.72679 * 0.55884 * 5 4 3 21 21 C 1.37853 * 119.86423 * 359.71242 * 20 5 4 22 22 C 1.38533 * 119.92925 * 279.99668 * 3 2 1 23 23 Cl 1.73595 * 119.86358 * 0.02562 * 22 3 2 24 24 H 1.09001 * 109.47002 * 60.00070 * 1 2 3 25 25 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47050 * 300.00336 * 1 2 3 27 27 H 1.09001 * 109.46998 * 119.99373 * 2 1 3 28 28 H 1.09000 * 109.47050 * 239.99664 * 2 1 3 29 29 H 1.08003 * 120.06551 * 359.97438 * 4 3 2 30 30 H 1.07994 * 120.45167 * 359.97084 * 7 6 5 31 31 H 0.97002 * 120.00078 * 180.02562 * 13 12 10 32 32 H 1.07995 * 120.45269 * 179.97438 * 19 18 9 33 33 H 1.08005 * 120.06791 * 179.68642 * 20 5 4 34 34 H 1.08008 * 119.93182 * 179.97438 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.4522 2.0023 1.1778 5 6 2.9227 3.3172 1.1752 6 6 3.3800 3.9448 2.4339 7 6 3.3493 3.2334 3.6445 8 7 3.7695 3.8225 4.7436 9 6 4.2102 5.0840 4.7190 10 6 4.6460 5.6828 5.9197 11 1 5.0044 6.7015 5.9160 12 6 4.6136 4.9556 7.1172 13 7 4.1794 3.7233 7.1217 14 14 5.1913 5.7482 8.7070 15 1 5.6322 7.1398 8.4346 16 1 4.0748 5.7648 9.6861 17 1 6.3266 4.9698 9.2642 18 7 4.2486 5.7934 3.5869 19 6 3.8503 5.2681 2.4480 20 6 2.9540 4.0394 -0.0203 21 6 2.5264 3.4489 -1.1903 22 6 2.0663 2.1419 -1.1824 23 17 1.5290 1.4055 -2.6597 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5137 0.8901 28 1 1.8934 -0.5139 -0.8900 29 1 2.4207 1.4406 2.0998 30 1 2.9897 2.2155 3.6722 31 1 4.1567 3.2200 7.9507 32 1 3.8836 5.8470 1.5370 33 1 3.3121 5.0583 -0.0278 34 1 2.5498 4.0063 -2.1152 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205808566.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:11 Heat of formation + Delta-G solvation = 43.413580 kcal Electronic energy + Delta-G solvation = -19142.486272 eV Core-core repulsion = 16065.285982 eV Total energy + Delta-G solvation = -3077.200290 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.55308 -38.55751 -36.19482 -34.41470 -33.82542 -32.19084 -31.63878 -29.56506 -28.71229 -26.12198 -24.14168 -23.01818 -22.61612 -21.17951 -20.01529 -18.11135 -16.75280 -16.29917 -15.48276 -15.24701 -14.87348 -14.61778 -13.94206 -13.51634 -13.38203 -13.30899 -13.06137 -12.84226 -12.43213 -12.17591 -11.84205 -11.54920 -11.47752 -11.40816 -11.25297 -11.13993 -10.93930 -10.80715 -10.41854 -10.30176 -9.76308 -9.36067 -9.31520 -8.91200 -8.54402 -7.51461 -7.42812 -6.79037 -4.91952 1.25968 1.64687 2.43539 2.54146 2.84550 2.92542 2.97559 2.98884 3.69677 4.05750 4.51159 4.84846 4.97773 5.21752 5.39357 5.43810 5.55426 5.61388 5.63639 5.73608 5.73918 5.81302 5.95654 6.03491 6.08883 6.17527 6.21151 6.30497 6.56365 6.60103 6.71998 6.75663 6.92760 7.18587 7.29679 7.45919 7.91783 8.23780 8.31966 8.88971 9.85130 10.04443 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.035852 B = 0.003411 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.806800 B = 8206.209818 C = 8896.360350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.058 4.058 4 C -0.136 4.136 5 C 0.051 3.949 6 C -0.336 4.336 7 C 0.185 3.815 8 N -0.508 5.508 9 C 0.377 3.623 10 C -0.369 4.369 11 H 0.099 0.901 12 C 0.058 3.942 13 N -0.692 5.692 14 Si 0.923 3.077 15 H -0.255 1.255 16 H -0.269 1.269 17 H -0.269 1.269 18 N -0.592 5.592 19 C 0.192 3.808 20 C -0.144 4.144 21 C -0.093 4.093 22 C -0.075 4.075 23 Cl -0.092 7.092 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.127 0.873 30 H 0.132 0.868 31 H 0.280 0.720 32 H 0.133 0.867 33 H 0.126 0.874 34 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.062 -5.142 -9.425 11.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.059 4.059 4 C -0.155 4.155 5 C 0.049 3.951 6 C -0.347 4.347 7 C 0.008 3.992 8 N -0.224 5.224 9 C 0.145 3.855 10 C -0.402 4.402 11 H 0.117 0.883 12 C -0.171 4.171 13 N -0.312 5.312 14 Si 0.746 3.254 15 H -0.179 1.179 16 H -0.194 1.194 17 H -0.194 1.194 18 N -0.310 5.310 19 C 0.016 3.984 20 C -0.163 4.163 21 C -0.111 4.111 22 C -0.101 4.101 23 Cl -0.064 7.064 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.145 0.855 30 H 0.149 0.851 31 H 0.092 0.908 32 H 0.150 0.850 33 H 0.144 0.856 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.767 -4.887 -8.333 10.369 hybrid contribution -0.148 -0.240 -0.415 0.502 sum -3.915 -5.127 -8.748 10.869 Atomic orbital electron populations 1.21726 0.94699 1.01471 1.02427 1.20548 0.96361 0.92495 1.02891 1.19540 0.98709 0.96057 0.91606 1.20992 1.02372 0.95221 0.96880 1.18784 0.91775 0.92174 0.92401 1.19705 1.22024 0.98916 0.94005 1.23067 0.90349 0.97893 0.87935 1.69358 1.15244 1.11083 1.26674 1.19977 0.88997 0.85697 0.90794 1.19612 1.31346 0.99869 0.89340 0.88334 1.26267 0.94356 0.94812 1.01655 1.70124 1.24718 1.07742 1.28589 0.85995 0.79209 0.80617 0.79576 1.17869 1.19374 1.19380 1.68663 1.24344 1.38816 0.99199 1.22706 0.89140 0.90842 0.95715 1.21072 1.03415 1.00338 0.91444 1.20794 0.98739 0.92962 0.98633 1.20565 1.08525 0.94641 0.86417 1.98301 1.89225 1.83246 1.35608 0.92332 0.92626 0.92503 0.90918 0.90819 0.85521 0.85077 0.90831 0.84951 0.85586 0.85853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.84 37.16 0.37 -1.25 16 2 C -0.09 -1.04 5.51 -27.88 -0.15 -1.19 16 3 C -0.06 -0.85 5.13 -104.64 -0.54 -1.39 16 4 C -0.14 -2.21 9.07 -39.17 -0.36 -2.56 16 5 C 0.05 0.91 5.88 -104.86 -0.62 0.29 16 6 C -0.34 -7.11 5.94 -104.28 -0.62 -7.73 16 7 C 0.19 4.23 10.70 -16.83 -0.18 4.05 16 8 N -0.51 -13.38 7.83 -12.41 -0.10 -13.47 16 9 C 0.38 10.16 7.35 -158.16 -1.16 9.00 16 10 C -0.37 -9.55 9.35 -37.80 -0.35 -9.90 16 11 H 0.10 2.43 7.85 -52.49 -0.41 2.02 16 12 C 0.06 1.38 5.50 -17.34 -0.10 1.28 16 13 N -0.69 -17.06 11.40 55.56 0.63 -16.43 16 14 Si 0.92 17.22 29.56 -169.99 -5.02 12.20 16 15 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 16 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 17 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 18 N -0.59 -15.03 10.34 -12.41 -0.13 -15.16 16 19 C 0.19 4.21 10.70 -16.83 -0.18 4.03 16 20 C -0.14 -2.28 9.45 -39.18 -0.37 -2.65 16 21 C -0.09 -1.33 9.81 -39.60 -0.39 -1.72 16 22 C -0.07 -1.08 6.32 -39.35 -0.25 -1.33 16 23 Cl -0.09 -1.17 26.59 -51.86 -1.38 -2.55 16 24 H 0.06 0.67 7.25 -51.93 -0.38 0.29 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.82 8.00 -51.93 -0.42 0.40 16 28 H 0.07 0.85 7.34 -51.93 -0.38 0.47 16 29 H 0.13 1.95 6.26 -52.48 -0.33 1.62 16 30 H 0.13 2.61 6.33 -52.49 -0.33 2.28 16 31 H 0.28 6.13 8.29 -40.82 -0.34 5.79 16 32 H 0.13 2.43 6.33 -52.49 -0.33 2.09 16 33 H 0.13 1.81 6.29 -52.48 -0.33 1.48 16 34 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 LS Contribution 305.88 15.07 4.61 4.61 Total: -1.00 -27.74 305.88 -9.59 -37.33 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -3.31 Total: 4.53 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: -4.90 Total: -11.07 kcal Atomic # 7 Polarization: -45.47 SS G_CDS: 0.41 Total: -45.06 kcal Atomic # 14 Polarization: 17.22 SS G_CDS: -5.02 Total: 12.20 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -1.38 Total: -2.55 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -27.74 -9.59 -37.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205808566.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.746 kcal (2) G-P(sol) polarization free energy of solvation -27.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds