Wall clock time and date at job start Tue Mar 31 2020 06:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50697 * 109.47239 * 2 1 4 4 C 1.37898 * 119.93587 * 99.72636 * 3 2 1 5 5 C 1.39663 * 119.86454 * 179.73198 * 4 3 2 6 6 C 1.47900 * 120.13524 * 180.27021 * 5 4 3 7 7 C 1.40445 * 120.79282 * 0.02562 * 6 5 4 8 8 N 1.31586 * 119.09104 * 179.71252 * 7 6 5 9 9 C 1.33651 * 120.83043 * 0.57014 * 8 7 6 10 10 C 1.41069 * 119.13267 * 179.67723 * 9 8 7 11 11 H 1.07994 * 120.00047 * 180.02562 * 10 9 8 12 12 C 1.40138 * 119.99778 * 0.02562 * 10 9 8 13 13 N 1.30662 * 119.99960 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00033 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47018 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.47388 * 119.99642 * 14 12 10 17 17 H 1.48496 * 109.47213 * 239.99680 * 14 12 10 18 18 N 1.33653 * 121.73596 * 359.70107 * 9 8 7 19 19 C 1.31585 * 120.83397 * 359.97438 * 18 9 8 20 20 C 1.39703 * 119.72679 * 0.55884 * 5 4 3 21 21 C 1.37853 * 119.86423 * 359.71242 * 20 5 4 22 22 C 1.38533 * 119.92925 * 279.99668 * 3 2 1 23 23 Cl 1.73595 * 119.86358 * 0.02562 * 22 3 2 24 24 H 1.09001 * 109.47002 * 60.00070 * 1 2 3 25 25 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47050 * 300.00336 * 1 2 3 27 27 H 1.09001 * 109.46998 * 119.99373 * 2 1 3 28 28 H 1.09000 * 109.47050 * 239.99664 * 2 1 3 29 29 H 1.08003 * 120.06551 * 359.97438 * 4 3 2 30 30 H 1.07994 * 120.45167 * 359.97084 * 7 6 5 31 31 H 0.97002 * 120.00078 * 180.02562 * 13 12 10 32 32 H 1.07995 * 120.45269 * 179.97438 * 19 18 9 33 33 H 1.08005 * 120.06791 * 179.68642 * 20 5 4 34 34 H 1.08008 * 119.93182 * 179.97438 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.4522 2.0023 1.1778 5 6 2.9227 3.3172 1.1752 6 6 3.3800 3.9448 2.4339 7 6 3.3493 3.2334 3.6445 8 7 3.7695 3.8225 4.7436 9 6 4.2102 5.0840 4.7190 10 6 4.6460 5.6828 5.9197 11 1 5.0044 6.7015 5.9160 12 6 4.6136 4.9556 7.1172 13 7 4.1794 3.7233 7.1217 14 14 5.1913 5.7482 8.7070 15 1 5.6322 7.1398 8.4346 16 1 4.0748 5.7648 9.6861 17 1 6.3266 4.9698 9.2642 18 7 4.2486 5.7934 3.5869 19 6 3.8503 5.2681 2.4480 20 6 2.9540 4.0394 -0.0203 21 6 2.5264 3.4489 -1.1903 22 6 2.0663 2.1419 -1.1824 23 17 1.5290 1.4055 -2.6597 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5137 0.8901 28 1 1.8934 -0.5139 -0.8900 29 1 2.4207 1.4406 2.0998 30 1 2.9897 2.2155 3.6722 31 1 4.1567 3.2200 7.9507 32 1 3.8836 5.8470 1.5370 33 1 3.3121 5.0583 -0.0278 34 1 2.5498 4.0063 -2.1152 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205808566.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:11 Heat of formation + Delta-G solvation = 30.248024 kcal Electronic energy + Delta-G solvation = -19143.057173 eV Core-core repulsion = 16065.285982 eV Total energy + Delta-G solvation = -3077.771192 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.12168 -40.01757 -37.34358 -35.95180 -35.12788 -33.95124 -33.19513 -30.89356 -30.12115 -27.78181 -25.47168 -24.51296 -24.10799 -22.60710 -21.34250 -19.86636 -18.14594 -17.88387 -17.05167 -16.54558 -16.28961 -16.11994 -15.19320 -14.99782 -14.73858 -14.52588 -14.47763 -14.31361 -13.91719 -13.34794 -13.09857 -13.00869 -12.94305 -12.76453 -12.59699 -12.43908 -12.27662 -11.94417 -11.77942 -11.43355 -11.39137 -11.21108 -11.04422 -10.42366 -9.74516 -9.33876 -8.95594 -8.53252 -6.76466 -0.15654 0.43053 0.94711 1.05927 1.27832 1.39533 1.51064 1.57210 2.16515 2.58652 2.93034 3.73644 3.82934 3.87975 3.88361 3.97880 4.03651 4.31835 4.34742 4.43411 4.48287 4.53221 4.59754 4.84275 4.93044 5.00318 5.05542 5.08238 5.20718 5.22905 5.33265 5.39518 5.51544 5.73140 5.81682 5.95271 6.06618 6.42248 6.50817 7.09497 8.12048 8.25748 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.035852 B = 0.003411 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.806800 B = 8206.209818 C = 8896.360350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.086 4.086 3 C -0.063 4.063 4 C -0.136 4.136 5 C 0.020 3.980 6 C -0.319 4.319 7 C 0.165 3.835 8 N -0.539 5.539 9 C 0.351 3.649 10 C -0.414 4.414 11 H 0.095 0.905 12 C 0.020 3.980 13 N -0.732 5.732 14 Si 1.003 2.997 15 H -0.254 1.254 16 H -0.260 1.260 17 H -0.260 1.260 18 N -0.619 5.619 19 C 0.176 3.824 20 C -0.139 4.139 21 C -0.093 4.093 22 C -0.070 4.070 23 Cl -0.070 7.070 24 H 0.054 0.946 25 H 0.075 0.925 26 H 0.048 0.952 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.129 0.871 30 H 0.153 0.847 31 H 0.289 0.711 32 H 0.168 0.832 33 H 0.139 0.861 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.695 -5.962 -11.203 13.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.123 4.123 3 C -0.063 4.063 4 C -0.155 4.155 5 C 0.018 3.982 6 C -0.328 4.328 7 C -0.010 4.010 8 N -0.256 5.256 9 C 0.117 3.883 10 C -0.447 4.447 11 H 0.113 0.887 12 C -0.205 4.205 13 N -0.353 5.353 14 Si 0.821 3.179 15 H -0.177 1.177 16 H -0.184 1.184 17 H -0.184 1.184 18 N -0.338 5.338 19 C 0.003 3.997 20 C -0.158 4.158 21 C -0.111 4.111 22 C -0.096 4.096 23 Cl -0.041 7.041 24 H 0.073 0.927 25 H 0.094 0.906 26 H 0.067 0.933 27 H 0.098 0.902 28 H 0.101 0.899 29 H 0.147 0.853 30 H 0.170 0.830 31 H 0.100 0.900 32 H 0.184 0.816 33 H 0.157 0.843 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -4.428 -5.742 -10.193 12.509 hybrid contribution -0.092 -0.157 -0.296 0.347 sum -4.520 -5.899 -10.489 12.855 Atomic orbital electron populations 1.21710 0.93812 1.02674 1.01859 1.20624 0.97030 0.90909 1.03754 1.19801 0.98129 0.97351 0.91063 1.21098 1.01864 0.94708 0.97807 1.18733 0.94416 0.93305 0.91765 1.19967 1.19555 0.98412 0.94874 1.23522 0.90408 0.98965 0.88139 1.69321 1.16670 1.11304 1.28316 1.20373 0.89802 0.86358 0.91748 1.19872 1.33923 1.00343 0.90551 0.88731 1.27174 0.93764 0.95094 1.04464 1.70174 1.25972 1.09138 1.30004 0.84852 0.78916 0.79423 0.74714 1.17744 1.18417 1.18433 1.68677 1.25754 1.39436 0.99913 1.23305 0.88672 0.91726 0.95998 1.21251 1.02570 1.00829 0.91111 1.21077 0.97822 0.93099 0.99125 1.20829 1.06788 0.94764 0.87265 1.98317 1.88848 1.82886 1.34090 0.92661 0.90633 0.93270 0.90150 0.89934 0.85333 0.83013 0.89992 0.81551 0.84300 0.83164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.84 71.98 0.71 -2.08 16 2 C -0.09 -1.84 5.51 29.85 0.16 -1.68 16 3 C -0.06 -1.68 5.13 -19.88 -0.10 -1.78 16 4 C -0.14 -4.23 9.07 22.53 0.20 -4.02 16 5 C 0.02 0.68 5.88 -20.02 -0.12 0.56 16 6 C -0.32 -13.52 5.94 -19.64 -0.12 -13.64 16 7 C 0.16 7.73 10.70 85.27 0.91 8.64 16 8 N -0.54 -29.63 7.83 -193.17 -1.51 -31.14 16 9 C 0.35 19.80 7.35 134.90 0.99 20.79 16 10 C -0.41 -22.47 9.35 23.43 0.22 -22.25 16 11 H 0.09 4.95 7.85 -2.91 -0.02 4.92 16 12 C 0.02 0.98 5.50 85.33 0.47 1.45 16 13 N -0.73 -37.43 11.40 21.85 0.25 -37.18 16 14 Si 1.00 36.07 29.56 68.60 2.03 38.10 16 15 H -0.25 -8.94 7.11 99.48 0.71 -8.23 16 16 H -0.26 -8.86 7.11 99.48 0.71 -8.15 16 17 H -0.26 -8.87 7.11 99.48 0.71 -8.16 16 18 N -0.62 -32.50 10.34 -193.17 -2.00 -34.50 16 19 C 0.18 7.81 10.70 85.27 0.91 8.72 16 20 C -0.14 -4.07 9.45 22.53 0.21 -3.86 16 21 C -0.09 -2.36 9.81 22.26 0.22 -2.14 16 22 C -0.07 -1.80 6.32 22.42 0.14 -1.66 16 23 Cl -0.07 -1.53 26.59 -2.72 -0.07 -1.61 16 24 H 0.05 1.10 7.25 -2.39 -0.02 1.09 16 25 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.08 1.61 8.00 -2.39 -0.02 1.59 16 28 H 0.08 1.64 7.34 -2.39 -0.02 1.62 16 29 H 0.13 3.86 6.26 -2.91 -0.02 3.84 16 30 H 0.15 6.18 6.33 -2.91 -0.02 6.16 16 31 H 0.29 13.01 8.29 -92.71 -0.77 12.24 16 32 H 0.17 5.94 6.33 -2.91 -0.02 5.92 16 33 H 0.14 3.63 6.29 -2.91 -0.02 3.62 16 34 H 0.15 3.02 8.06 -2.91 -0.02 2.99 16 Total: -1.00 -62.32 305.88 4.65 -57.66 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: 1.14 Total: 21.60 kcal Atomic # 6 Polarization: -17.75 SS G_CDS: 4.82 Total: -12.93 kcal Atomic # 7 Polarization: -99.57 SS G_CDS: -3.26 Total: -102.83 kcal Atomic # 14 Polarization: 36.07 SS G_CDS: 2.03 Total: 38.10 kcal Atomic # 17 Polarization: -1.53 SS G_CDS: -0.07 Total: -1.61 kcal Total: -62.32 4.65 -57.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205808566.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.912 kcal (2) G-P(sol) polarization free energy of solvation -62.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds