Wall clock time and date at job start Tue Mar 31 2020 06:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.76204 * 102.99803 * 2 1 4 4 C 1.38826 * 120.12054 * 0.02562 * 3 2 1 5 5 C 1.38111 * 120.06358 * 179.97438 * 4 3 2 6 6 C 1.38620 * 120.30402 * 0.02562 * 5 4 3 7 7 F 1.35102 * 119.87861 * 179.97438 * 6 5 4 8 8 C 1.38195 * 120.24108 * 359.74820 * 6 5 4 9 9 C 1.39285 * 119.93431 * 0.48079 * 8 6 5 10 10 C 1.48298 * 120.15446 * 179.79473 * 9 8 6 11 11 C 1.39785 * 120.00489 * 129.97810 * 10 9 8 12 12 C 1.38373 * 120.37124 * 180.25835 * 11 10 9 13 13 C 1.37734 * 120.38247 * 359.74484 * 12 11 10 14 14 C 1.40761 * 120.00348 * 0.02562 * 13 12 11 15 15 C 1.41422 * 120.18957 * 180.02562 * 14 13 12 16 16 H 1.07992 * 120.00314 * 150.16939 * 15 14 13 17 17 C 1.39932 * 119.99567 * 330.17912 * 15 14 13 18 18 N 1.30833 * 119.99852 * 161.72957 * 17 15 14 19 19 Si 1.86801 * 120.00110 * 341.72558 * 17 15 14 20 20 H 1.48498 * 109.46940 * 95.41461 * 19 17 15 21 21 H 1.48494 * 109.47286 * 215.41799 * 19 17 15 22 22 H 1.48501 * 109.47020 * 335.42063 * 19 17 15 23 23 C 1.38778 * 120.00177 * 309.72805 * 10 9 8 24 24 H 1.08998 * 109.46919 * 299.99591 * 1 2 3 25 25 H 1.08991 * 109.47101 * 60.00086 * 1 2 3 26 26 H 1.09002 * 109.47177 * 180.02562 * 1 2 3 27 27 H 1.08002 * 119.96864 * 359.97438 * 4 3 2 28 28 H 1.07999 * 119.84570 * 180.02562 * 5 4 3 29 29 H 1.07995 * 120.03229 * 180.27721 * 8 6 5 30 30 H 1.07995 * 119.81370 * 0.02562 * 11 10 9 31 31 H 1.07997 * 119.80969 * 179.72423 * 12 11 10 32 32 H 1.08007 * 119.99625 * 179.97438 * 13 12 11 33 33 H 0.97001 * 119.99920 * 179.97438 * 18 17 15 34 34 H 1.08001 * 120.19523 * 0.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1970 2.6658 0.0005 5 6 1.5090 4.0112 0.0011 6 6 2.8329 4.4222 0.0005 7 9 3.1282 5.7406 0.0005 8 6 3.8516 3.4884 0.0047 9 6 3.5483 2.1290 -0.0006 10 6 4.6377 1.1228 -0.0008 11 6 4.6208 0.0741 0.9233 12 6 5.6361 -0.8660 0.9334 13 6 6.6721 -0.7821 0.0297 14 6 6.7026 0.2646 -0.9110 15 6 7.7642 0.3542 -1.8410 16 1 7.5952 0.7941 -2.8127 17 6 9.0336 -0.1274 -1.5022 18 7 9.9096 -0.3793 -2.4408 19 14 9.4775 -0.4105 0.2901 20 1 9.2430 -1.8347 0.6390 21 1 10.9087 -0.0775 0.5042 22 1 8.6334 0.4557 1.1518 23 6 5.6713 1.2192 -0.9218 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 0.1637 2.3516 0.0005 28 1 0.7179 4.7464 0.0019 29 1 4.8818 3.8124 0.0088 30 1 3.8127 -0.0007 1.6358 31 1 5.6163 -1.6699 1.6543 32 1 7.4616 -1.5190 0.0434 33 1 10.7897 -0.7127 -2.2059 34 1 5.6858 2.0260 -1.6396 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205968802.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:59 Heat of formation + Delta-G solvation = -9.039203 kcal Electronic energy + Delta-G solvation = -19371.581982 eV Core-core repulsion = 16274.230913 eV Total energy + Delta-G solvation = -3097.351069 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.068 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.76345 -39.11901 -37.42468 -33.79123 -32.17286 -30.90011 -30.28640 -28.79916 -28.44717 -25.20862 -23.27637 -22.73533 -20.71207 -20.47236 -17.97460 -17.30670 -16.57336 -16.23743 -15.82806 -15.47298 -14.84562 -14.62249 -14.47885 -13.91707 -13.77532 -13.67924 -13.28612 -12.88861 -12.82505 -12.60063 -12.33566 -11.99743 -11.87582 -11.58487 -11.27498 -10.79783 -10.73738 -10.36954 -10.11541 -9.80195 -9.66100 -9.38997 -9.23558 -8.94562 -7.73876 -7.62643 -7.04043 -6.96301 -4.51005 1.07600 1.21381 1.64633 2.49095 2.53907 2.68739 3.10038 3.20934 3.30459 3.62720 3.96722 4.32276 4.45868 4.77684 4.91061 5.00983 5.02364 5.17712 5.35982 5.38579 5.59715 5.78882 5.89060 5.98622 6.13272 6.18312 6.25006 6.36887 6.49511 6.68154 6.86543 6.92142 7.08976 7.34104 7.54657 7.66183 7.81954 8.02298 8.32608 8.59848 8.77157 10.06281 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.018215 B = 0.005201 C = 0.004386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.837567 B = 5381.879085 C = 6382.842432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 S -0.060 6.060 3 C -0.098 4.098 4 C -0.108 4.108 5 C -0.149 4.149 6 C 0.092 3.908 7 F -0.143 7.143 8 C -0.130 4.130 9 C 0.030 3.970 10 C -0.038 4.038 11 C -0.211 4.211 12 C -0.078 4.078 13 C -0.228 4.228 14 C 0.091 3.909 15 C -0.448 4.448 16 H 0.091 0.909 17 C 0.085 3.915 18 N -0.808 5.808 19 Si 0.910 3.090 20 H -0.270 1.270 21 H -0.291 1.291 22 H -0.244 1.244 23 C -0.178 4.178 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.104 0.896 27 H 0.130 0.870 28 H 0.133 0.867 29 H 0.143 0.857 30 H 0.105 0.895 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.285 0.715 34 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.718 3.350 5.745 16.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.342 4.342 2 S 0.185 5.815 3 C -0.211 4.211 4 C -0.132 4.132 5 C -0.169 4.169 6 C 0.070 3.930 7 F -0.121 7.121 8 C -0.150 4.150 9 C 0.025 3.975 10 C -0.039 4.039 11 C -0.231 4.231 12 C -0.096 4.096 13 C -0.247 4.247 14 C 0.088 3.912 15 C -0.477 4.477 16 H 0.109 0.891 17 C -0.134 4.134 18 N -0.432 5.432 19 Si 0.736 3.264 20 H -0.196 1.196 21 H -0.218 1.218 22 H -0.167 1.167 23 C -0.197 4.197 24 H 0.097 0.903 25 H 0.097 0.903 26 H 0.122 0.878 27 H 0.148 0.852 28 H 0.150 0.850 29 H 0.161 0.839 30 H 0.123 0.877 31 H 0.115 0.885 32 H 0.119 0.881 33 H 0.095 0.905 34 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -13.847 2.249 5.590 15.101 hybrid contribution -0.454 1.229 0.588 1.436 sum -14.300 3.478 6.178 15.961 Atomic orbital electron populations 1.23856 0.98772 1.06648 1.04947 1.86379 1.02049 1.01393 1.91687 1.21932 0.95606 0.97604 1.05938 1.20861 0.98290 0.91937 1.02148 1.20893 0.94762 0.96443 1.04818 1.17569 0.93608 0.77560 1.04262 1.91480 1.94225 1.32318 1.94097 1.21259 0.99615 0.91600 1.02550 1.18537 0.91155 0.92440 0.95379 1.18281 0.93227 0.94255 0.98140 1.20375 1.01142 0.98156 1.03463 1.20512 0.94377 0.97267 0.97453 1.21140 1.00564 1.00801 1.02206 1.17632 0.92727 0.89745 0.91131 1.19465 0.92737 1.34055 1.01423 0.89130 1.26133 0.96252 0.91011 0.99994 1.69700 1.06649 1.31469 1.35427 0.86336 0.77001 0.80049 0.83003 1.19614 1.21827 1.16713 1.21078 0.96705 1.00450 1.01511 0.90255 0.90287 0.87762 0.85219 0.84950 0.83910 0.87726 0.88471 0.88131 0.90453 0.87898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.66 9.15 101.05 0.92 -0.73 16 2 S -0.06 -0.87 19.30 -107.50 -2.07 -2.95 16 3 C -0.10 -1.53 6.09 -38.70 -0.24 -1.76 16 4 C -0.11 -1.39 9.36 -39.41 -0.37 -1.76 16 5 C -0.15 -1.90 10.01 -39.49 -0.40 -2.29 16 6 C 0.09 1.36 7.29 -39.46 -0.29 1.07 16 7 F -0.14 -2.11 17.26 2.25 0.04 -2.07 16 8 C -0.13 -2.15 9.48 -39.21 -0.37 -2.52 16 9 C 0.03 0.54 5.48 -104.71 -0.57 -0.03 16 10 C -0.04 -0.79 5.07 -104.98 -0.53 -1.33 16 11 C -0.21 -4.29 8.08 -38.95 -0.31 -4.60 16 12 C -0.08 -1.65 10.01 -39.72 -0.40 -2.05 16 13 C -0.23 -5.39 7.17 -38.81 -0.28 -5.67 16 14 C 0.09 2.26 5.10 -106.87 -0.55 1.72 16 15 C -0.45 -11.99 9.57 -37.74 -0.36 -12.36 16 16 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 17 C 0.08 2.21 5.40 -17.34 -0.09 2.11 16 18 N -0.81 -21.43 13.93 55.55 0.77 -20.66 16 19 Si 0.91 20.60 24.52 -169.99 -4.17 16.43 16 20 H -0.27 -5.92 6.71 56.52 0.38 -5.54 16 21 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.24 -5.65 6.86 56.52 0.39 -5.26 16 23 C -0.18 -4.08 9.25 -38.52 -0.36 -4.43 16 24 H 0.08 0.66 7.75 -51.92 -0.40 0.26 16 25 H 0.08 0.68 7.75 -51.93 -0.40 0.28 16 26 H 0.10 0.84 8.14 -51.92 -0.42 0.42 16 27 H 0.13 1.29 5.88 -52.49 -0.31 0.98 16 28 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 29 H 0.14 2.33 8.04 -52.49 -0.42 1.91 16 30 H 0.10 1.94 7.00 -52.49 -0.37 1.58 16 31 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 32 H 0.10 2.38 4.72 -52.48 -0.25 2.13 16 33 H 0.29 6.84 8.30 -40.82 -0.34 6.51 16 34 H 0.10 2.27 8.04 -52.49 -0.42 1.85 16 LS Contribution 301.97 15.07 4.55 4.55 Total: -1.00 -27.30 301.97 -8.50 -35.80 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -3.43 Total: 3.53 kcal Atomic # 6 Polarization: -30.45 SS G_CDS: -4.19 Total: -34.64 kcal Atomic # 7 Polarization: -21.43 SS G_CDS: 0.77 Total: -20.66 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.04 Total: -2.07 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.17 Total: 16.43 kcal Atomic # 16 Polarization: -0.87 SS G_CDS: -2.07 Total: -2.95 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -27.30 -8.50 -35.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205968802.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.763 kcal (2) G-P(sol) polarization free energy of solvation -27.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds