Wall clock time and date at job start Tue Mar 31 2020 06:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.76204 * 103.00104 * 2 1 4 4 C 1.38884 * 120.14711 * 0.25845 * 3 2 1 5 5 C 1.38043 * 120.08145 * 180.25317 * 4 3 2 6 6 C 1.38804 * 120.38589 * 359.74441 * 5 4 3 7 7 F 1.35101 * 119.85289 * 180.02562 * 6 5 4 8 8 C 1.38014 * 120.29586 * 359.97438 * 6 5 4 9 9 C 1.39640 * 119.90908 * 0.02562 * 8 6 5 10 10 C 1.47724 * 120.19039 * 179.97438 * 9 8 6 11 11 C 1.40070 * 119.89330 * 130.26675 * 10 9 8 12 12 C 1.36173 * 120.10851 * 180.32691 * 11 10 9 13 13 C 1.40979 * 119.89012 * 359.43035 * 12 11 10 14 14 C 1.40953 * 120.10671 * 180.30306 * 13 12 11 15 15 H 1.08004 * 120.00031 * 204.71849 * 14 13 12 16 16 C 1.39951 * 120.00265 * 24.71538 * 14 13 12 17 17 N 1.30841 * 119.99850 * 17.99321 * 16 14 13 18 18 Si 1.86797 * 120.00001 * 197.99578 * 16 14 13 19 19 H 1.48505 * 109.47365 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47322 * 119.99690 * 18 16 14 21 21 H 1.48496 * 109.47147 * 239.99902 * 18 16 14 22 22 C 1.40972 * 119.78607 * 0.27784 * 13 12 11 23 23 C 1.36180 * 119.88474 * 0.02562 * 22 13 12 24 24 H 1.08995 * 109.47037 * 59.99570 * 1 2 3 25 25 H 1.08999 * 109.46988 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46241 * 299.99520 * 1 2 3 27 27 H 1.08003 * 119.95736 * 359.97438 * 4 3 2 28 28 H 1.08002 * 119.80847 * 179.76736 * 5 4 3 29 29 H 1.07993 * 120.04298 * 179.97438 * 8 6 5 30 30 H 1.08001 * 119.94608 * 0.05736 * 11 10 9 31 31 H 1.08004 * 120.05820 * 179.71066 * 12 11 10 32 32 H 0.96999 * 119.99680 * 179.97438 * 17 16 14 33 33 H 1.07993 * 120.05867 * 180.02562 * 22 13 12 34 34 H 1.08004 * 119.94180 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1972 2.6667 0.0054 5 6 1.5092 4.0114 0.0001 6 6 2.8343 4.4246 -0.0053 7 9 3.1275 5.7434 -0.0099 8 6 3.8538 3.4942 -0.0049 9 6 3.5521 2.1308 0.0004 10 6 4.6384 1.1297 0.0003 11 6 4.6226 0.0824 0.9303 12 6 5.6252 -0.8391 0.9385 13 6 6.6739 -0.7446 0.0010 14 6 7.7106 -1.6996 0.0012 15 1 8.6797 -1.4448 -0.4018 16 6 7.4842 -2.9781 0.5236 17 7 6.2603 -3.4120 0.6840 18 14 8.9294 -4.0650 0.9919 19 1 10.1993 -3.3468 0.7146 20 1 8.8525 -4.3952 2.4377 21 1 8.8855 -5.3174 0.1951 22 6 6.6820 0.3077 -0.9370 23 6 5.6781 1.2279 -0.9331 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8901 27 1 0.1638 2.3528 0.0092 28 1 0.7177 4.7462 0.0006 29 1 4.8833 3.8203 -0.0095 30 1 3.8163 0.0081 1.6450 31 1 5.6147 -1.6436 1.6590 32 1 6.1035 -4.2982 1.0457 33 1 7.4829 0.3840 -1.6573 34 1 5.6837 2.0347 -1.6510 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205968965.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:01 Heat of formation + Delta-G solvation = -11.674228 kcal Electronic energy + Delta-G solvation = -19266.758144 eV Core-core repulsion = 16169.292811 eV Total energy + Delta-G solvation = -3097.465332 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.068 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.63343 -38.82407 -37.22111 -33.99167 -31.70210 -30.65385 -29.58670 -28.77989 -28.53753 -25.36707 -22.67446 -22.42254 -20.76106 -20.19479 -17.48323 -17.35455 -16.93186 -16.04533 -15.40329 -15.31614 -14.67508 -14.52272 -14.15358 -13.77559 -13.62692 -13.44617 -13.10834 -12.76031 -12.65058 -12.21423 -12.12041 -11.87363 -11.60702 -11.34704 -11.22501 -11.02889 -10.59820 -10.56310 -9.93079 -9.68048 -9.46981 -9.35343 -9.17761 -8.69687 -7.61255 -7.40068 -6.94011 -6.81079 -4.45959 1.30510 1.43579 1.87850 2.65336 2.77860 3.00354 3.05202 3.09146 3.14770 3.81570 3.84895 4.47624 4.54505 5.01092 5.10263 5.16482 5.18890 5.43006 5.58890 5.62141 5.75832 6.01789 6.10996 6.25287 6.29518 6.37356 6.45133 6.64771 6.88570 6.93813 7.10614 7.18204 7.25037 7.53271 7.79353 7.94704 8.01898 8.16460 8.51108 8.73932 8.85439 10.00432 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.021836 B = 0.004559 C = 0.003887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.993930 B = 6140.885054 C = 7201.727822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 S -0.058 6.058 3 C -0.115 4.115 4 C -0.104 4.104 5 C -0.166 4.166 6 C 0.093 3.907 7 F -0.147 7.147 8 C -0.150 4.150 9 C 0.066 3.934 10 C -0.218 4.218 11 C -0.062 4.062 12 C -0.170 4.170 13 C 0.121 3.879 14 C -0.448 4.448 15 H 0.082 0.918 16 C 0.075 3.925 17 N -0.776 5.776 18 Si 0.909 3.091 19 H -0.259 1.259 20 H -0.270 1.270 21 H -0.273 1.273 22 C -0.231 4.231 23 C -0.056 4.056 24 H 0.076 0.924 25 H 0.102 0.898 26 H 0.077 0.923 27 H 0.126 0.874 28 H 0.128 0.872 29 H 0.136 0.864 30 H 0.097 0.903 31 H 0.119 0.881 32 H 0.284 0.716 33 H 0.094 0.906 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.543 5.720 0.241 10.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.342 4.342 2 S 0.187 5.813 3 C -0.228 4.228 4 C -0.128 4.128 5 C -0.186 4.186 6 C 0.071 3.929 7 F -0.126 7.126 8 C -0.170 4.170 9 C 0.061 3.939 10 C -0.219 4.219 11 C -0.081 4.081 12 C -0.189 4.189 13 C 0.118 3.882 14 C -0.476 4.476 15 H 0.100 0.900 16 C -0.146 4.146 17 N -0.399 5.399 18 Si 0.733 3.267 19 H -0.182 1.182 20 H -0.195 1.195 21 H -0.198 1.198 22 C -0.250 4.250 23 C -0.074 4.074 24 H 0.095 0.905 25 H 0.121 0.879 26 H 0.096 0.904 27 H 0.143 0.857 28 H 0.146 0.854 29 H 0.154 0.846 30 H 0.115 0.885 31 H 0.137 0.863 32 H 0.095 0.905 33 H 0.113 0.887 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.061 4.449 0.302 9.212 hybrid contribution -0.344 0.859 0.123 0.933 sum -8.404 5.308 0.425 9.949 Atomic orbital electron populations 1.23831 0.99209 1.06470 1.04700 1.86505 1.01443 1.01548 1.91834 1.22118 0.95886 0.97307 1.07448 1.20822 0.98123 0.91996 1.01860 1.20781 0.94569 0.96315 1.06974 1.17598 0.93754 0.77283 1.04268 1.91452 1.94311 1.32650 1.94194 1.21242 0.98951 0.91889 1.04944 1.18477 0.90904 0.92012 0.92544 1.17891 0.98132 1.00012 1.05909 1.20420 0.97330 0.93353 0.97030 1.20943 0.96757 0.99940 1.01237 1.17736 0.91622 0.90490 0.88304 1.19705 0.98740 0.95608 1.33564 0.90023 1.26011 0.96794 0.98835 0.92912 1.69851 1.21403 1.18093 1.30595 0.86234 0.81862 0.79470 0.79104 1.18215 1.19492 1.19806 1.20631 1.00913 1.00778 1.02713 1.20277 0.93482 0.97227 0.96448 0.90506 0.87901 0.90424 0.85656 0.85446 0.84625 0.88468 0.86320 0.90522 0.88743 0.89279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.01 9.15 101.05 0.92 -1.08 16 2 S -0.06 -0.98 19.33 -107.50 -2.08 -3.06 16 3 C -0.11 -1.99 6.10 -38.53 -0.24 -2.23 16 4 C -0.10 -1.51 9.36 -39.41 -0.37 -1.88 16 5 C -0.17 -2.36 10.01 -39.44 -0.39 -2.76 16 6 C 0.09 1.48 7.29 -39.45 -0.29 1.19 16 7 F -0.15 -2.30 17.26 2.25 0.04 -2.26 16 8 C -0.15 -2.61 9.47 -39.14 -0.37 -2.98 16 9 C 0.07 1.27 5.48 -104.68 -0.57 0.69 16 10 C -0.22 -4.75 5.10 -104.65 -0.53 -5.29 16 11 C -0.06 -1.42 8.01 -39.64 -0.32 -1.74 16 12 C -0.17 -4.26 8.63 -39.29 -0.34 -4.59 16 13 C 0.12 3.12 5.57 -106.80 -0.60 2.52 16 14 C -0.45 -11.35 9.02 -37.91 -0.34 -11.70 16 15 H 0.08 1.99 7.91 -52.48 -0.42 1.57 16 16 C 0.07 1.78 5.13 -17.33 -0.09 1.69 16 17 N -0.78 -19.13 10.96 55.55 0.61 -18.52 16 18 Si 0.91 17.74 29.60 -169.99 -5.03 12.70 16 19 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 20 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 21 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 22 C -0.23 -5.50 9.73 -39.29 -0.38 -5.88 16 23 C -0.06 -1.24 9.43 -39.63 -0.37 -1.61 16 24 H 0.08 0.80 7.76 -51.93 -0.40 0.40 16 25 H 0.10 1.05 8.14 -51.92 -0.42 0.62 16 26 H 0.08 0.80 7.74 -51.92 -0.40 0.40 16 27 H 0.13 1.47 5.88 -52.48 -0.31 1.17 16 28 H 0.13 1.47 8.06 -52.49 -0.42 1.04 16 29 H 0.14 2.27 8.04 -52.49 -0.42 1.85 16 30 H 0.10 2.11 7.03 -52.49 -0.37 1.74 16 31 H 0.12 3.07 6.16 -52.48 -0.32 2.75 16 32 H 0.28 6.31 8.30 -40.82 -0.34 5.97 16 33 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 34 H 0.09 1.77 8.03 -52.48 -0.42 1.35 16 LS Contribution 307.07 15.07 4.63 4.63 Total: -1.00 -26.26 307.07 -9.58 -35.84 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -3.47 Total: 6.30 kcal Atomic # 6 Polarization: -31.36 SS G_CDS: -4.28 Total: -35.64 kcal Atomic # 7 Polarization: -19.13 SS G_CDS: 0.61 Total: -18.52 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 0.04 Total: -2.26 kcal Atomic # 14 Polarization: 17.74 SS G_CDS: -5.03 Total: 12.70 kcal Atomic # 16 Polarization: -0.98 SS G_CDS: -2.08 Total: -3.06 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -26.26 -9.58 -35.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205968965.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.166 kcal (2) G-P(sol) polarization free energy of solvation -26.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds