Wall clock time and date at job start Tue Mar 31 2020 06:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.76204 * 103.00104 * 2 1 4 4 C 1.38884 * 120.14711 * 0.25845 * 3 2 1 5 5 C 1.38043 * 120.08145 * 180.25317 * 4 3 2 6 6 C 1.38804 * 120.38589 * 359.74441 * 5 4 3 7 7 F 1.35101 * 119.85289 * 180.02562 * 6 5 4 8 8 C 1.38014 * 120.29586 * 359.97438 * 6 5 4 9 9 C 1.39640 * 119.90908 * 0.02562 * 8 6 5 10 10 C 1.47724 * 120.19039 * 179.97438 * 9 8 6 11 11 C 1.40070 * 119.89330 * 130.26675 * 10 9 8 12 12 C 1.36173 * 120.10851 * 180.32691 * 11 10 9 13 13 C 1.40979 * 119.89012 * 359.43035 * 12 11 10 14 14 C 1.40953 * 120.10671 * 180.30306 * 13 12 11 15 15 H 1.08004 * 120.00031 * 204.71849 * 14 13 12 16 16 C 1.39951 * 120.00265 * 24.71538 * 14 13 12 17 17 N 1.30841 * 119.99850 * 17.99321 * 16 14 13 18 18 Si 1.86797 * 120.00001 * 197.99578 * 16 14 13 19 19 H 1.48505 * 109.47365 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47322 * 119.99690 * 18 16 14 21 21 H 1.48496 * 109.47147 * 239.99902 * 18 16 14 22 22 C 1.40972 * 119.78607 * 0.27784 * 13 12 11 23 23 C 1.36180 * 119.88474 * 0.02562 * 22 13 12 24 24 H 1.08995 * 109.47037 * 59.99570 * 1 2 3 25 25 H 1.08999 * 109.46988 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46241 * 299.99520 * 1 2 3 27 27 H 1.08003 * 119.95736 * 359.97438 * 4 3 2 28 28 H 1.08002 * 119.80847 * 179.76736 * 5 4 3 29 29 H 1.07993 * 120.04298 * 179.97438 * 8 6 5 30 30 H 1.08001 * 119.94608 * 0.05736 * 11 10 9 31 31 H 1.08004 * 120.05820 * 179.71066 * 12 11 10 32 32 H 0.96999 * 119.99680 * 179.97438 * 17 16 14 33 33 H 1.07993 * 120.05867 * 180.02562 * 22 13 12 34 34 H 1.08004 * 119.94180 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1972 2.6667 0.0054 5 6 1.5092 4.0114 0.0001 6 6 2.8343 4.4246 -0.0053 7 9 3.1275 5.7434 -0.0099 8 6 3.8538 3.4942 -0.0049 9 6 3.5521 2.1308 0.0004 10 6 4.6384 1.1297 0.0003 11 6 4.6226 0.0824 0.9303 12 6 5.6252 -0.8391 0.9385 13 6 6.6739 -0.7446 0.0010 14 6 7.7106 -1.6996 0.0012 15 1 8.6797 -1.4448 -0.4018 16 6 7.4842 -2.9781 0.5236 17 7 6.2603 -3.4120 0.6840 18 14 8.9294 -4.0650 0.9919 19 1 10.1993 -3.3468 0.7146 20 1 8.8525 -4.3952 2.4377 21 1 8.8855 -5.3174 0.1951 22 6 6.6820 0.3077 -0.9370 23 6 5.6781 1.2279 -0.9331 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8901 27 1 0.1638 2.3528 0.0092 28 1 0.7177 4.7462 0.0006 29 1 4.8833 3.8203 -0.0095 30 1 3.8163 0.0081 1.6450 31 1 5.6147 -1.6436 1.6590 32 1 6.1035 -4.2982 1.0457 33 1 7.4829 0.3840 -1.6573 34 1 5.6837 2.0347 -1.6510 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205968965.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:01 Heat of formation + Delta-G solvation = -22.058253 kcal Electronic energy + Delta-G solvation = -19267.208429 eV Core-core repulsion = 16169.292811 eV Total energy + Delta-G solvation = -3097.915617 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.068 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.86601 -40.28603 -38.86259 -35.73548 -33.23032 -31.99234 -31.31225 -30.40372 -29.56113 -27.06791 -24.06752 -23.87866 -22.51846 -21.82455 -19.28599 -18.71304 -18.23853 -17.39696 -17.06680 -16.56812 -16.11982 -15.84762 -15.64571 -15.28565 -15.12972 -14.56680 -14.43945 -14.31662 -13.92801 -13.68621 -13.61896 -13.38230 -13.04393 -12.86219 -12.76742 -12.60307 -12.29700 -12.02256 -11.57795 -11.37165 -11.10588 -10.85406 -10.46071 -10.10888 -9.43843 -9.14183 -8.69193 -8.19557 -6.34229 -0.01930 0.14807 0.67050 0.98489 1.20778 1.39091 1.50779 1.54573 1.71604 2.19357 2.48708 2.75175 3.27557 3.69562 3.80234 3.93378 4.15749 4.30425 4.33550 4.37571 4.45039 4.48404 4.75382 4.84727 4.91706 5.01899 5.09622 5.12557 5.13759 5.23336 5.36598 5.45442 5.70143 5.82358 6.01478 6.08398 6.19315 6.32720 6.65540 6.88328 6.99944 8.26824 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.021836 B = 0.004559 C = 0.003887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.993930 B = 6140.885054 C = 7201.727822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 S -0.138 6.138 3 C -0.111 4.111 4 C -0.096 4.096 5 C -0.143 4.143 6 C 0.086 3.914 7 F -0.145 7.145 8 C -0.153 4.153 9 C 0.029 3.971 10 C -0.203 4.203 11 C -0.061 4.061 12 C -0.190 4.190 13 C 0.091 3.909 14 C -0.488 4.488 15 H 0.079 0.921 16 C 0.037 3.963 17 N -0.811 5.811 18 Si 0.983 3.017 19 H -0.257 1.257 20 H -0.263 1.263 21 H -0.264 1.264 22 C -0.246 4.246 23 C -0.063 4.063 24 H 0.095 0.905 25 H 0.117 0.883 26 H 0.097 0.903 27 H 0.162 0.838 28 H 0.166 0.834 29 H 0.134 0.866 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.291 0.709 33 H 0.100 0.900 34 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.035 7.132 0.232 13.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.319 4.319 2 S 0.106 5.894 3 C -0.224 4.224 4 C -0.120 4.120 5 C -0.164 4.164 6 C 0.064 3.936 7 F -0.123 7.123 8 C -0.173 4.173 9 C 0.024 3.976 10 C -0.204 4.204 11 C -0.081 4.081 12 C -0.210 4.210 13 C 0.088 3.912 14 C -0.516 4.516 15 H 0.097 0.903 16 C -0.180 4.180 17 N -0.436 5.436 18 Si 0.804 3.196 19 H -0.181 1.181 20 H -0.188 1.188 21 H -0.189 1.189 22 C -0.266 4.266 23 C -0.082 4.082 24 H 0.114 0.886 25 H 0.135 0.865 26 H 0.116 0.884 27 H 0.180 0.820 28 H 0.184 0.816 29 H 0.152 0.848 30 H 0.122 0.878 31 H 0.120 0.880 32 H 0.102 0.898 33 H 0.118 0.882 34 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -10.558 5.880 0.288 12.089 hybrid contribution 0.124 0.648 0.095 0.666 sum -10.435 6.528 0.383 12.314 Atomic orbital electron populations 1.23873 0.93394 1.08104 1.06530 1.86782 1.07878 1.02824 1.91957 1.22170 0.95761 0.97480 1.06957 1.21223 0.99110 0.91465 1.00234 1.21231 0.94599 0.96968 1.03555 1.17666 0.94225 0.77130 1.04541 1.91465 1.94396 1.32292 1.94182 1.21230 0.99650 0.91615 1.04821 1.18368 0.91110 0.92000 0.96129 1.18160 0.98378 0.99687 1.04198 1.20511 0.96775 0.93345 0.97427 1.20887 0.97926 1.00584 1.01573 1.18043 0.92358 0.91572 0.89187 1.19904 0.98813 0.96851 1.36073 0.90265 1.26823 0.99459 0.99619 0.92124 1.69898 1.23302 1.18926 1.31478 0.85141 0.78108 0.77468 0.78932 1.18079 1.18759 1.18895 1.20814 1.01876 1.01079 1.02793 1.20548 0.93209 0.97440 0.96970 0.88621 0.86461 0.88440 0.82049 0.81612 0.84836 0.87754 0.87998 0.89803 0.88185 0.87069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.15 113.37 1.04 -1.88 16 2 S -0.14 -4.55 19.33 -56.49 -1.09 -5.65 16 3 C -0.11 -3.62 6.10 22.95 0.14 -3.48 16 4 C -0.10 -2.38 9.36 22.38 0.21 -2.17 16 5 C -0.14 -3.38 10.01 22.36 0.22 -3.16 16 6 C 0.09 2.48 7.29 22.35 0.16 2.64 16 7 F -0.14 -4.08 17.26 44.97 0.78 -3.30 16 8 C -0.15 -5.12 9.47 22.56 0.21 -4.90 16 9 C 0.03 1.10 5.48 -19.90 -0.11 0.99 16 10 C -0.20 -9.02 5.10 -19.88 -0.10 -9.12 16 11 C -0.06 -2.93 8.01 22.23 0.18 -2.75 16 12 C -0.19 -10.13 8.63 22.46 0.19 -9.93 16 13 C 0.09 4.94 5.57 -21.27 -0.12 4.83 16 14 C -0.49 -26.13 9.02 23.35 0.21 -25.92 16 15 H 0.08 4.08 7.91 -2.91 -0.02 4.06 16 16 C 0.04 1.81 5.13 85.26 0.44 2.25 16 17 N -0.81 -41.90 10.96 21.83 0.24 -41.66 16 18 Si 0.98 37.41 29.60 68.60 2.03 39.44 16 19 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 20 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 21 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 22 C -0.25 -12.27 9.73 22.46 0.22 -12.05 16 23 C -0.06 -2.88 9.43 22.24 0.21 -2.67 16 24 H 0.09 1.53 7.76 -2.39 -0.02 1.51 16 25 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.10 1.54 7.74 -2.39 -0.02 1.52 16 27 H 0.16 2.81 5.88 -2.91 -0.02 2.79 16 28 H 0.17 2.72 8.06 -2.91 -0.02 2.69 16 29 H 0.13 4.41 8.04 -2.91 -0.02 4.39 16 30 H 0.10 4.71 7.03 -2.91 -0.02 4.69 16 31 H 0.10 5.65 6.16 -2.91 -0.02 5.63 16 32 H 0.29 13.46 8.30 -92.71 -0.77 12.69 16 33 H 0.10 4.69 8.06 -2.91 -0.02 4.67 16 34 H 0.11 4.43 8.03 -2.91 -0.02 4.40 16 Total: -1.00 -60.36 307.07 6.18 -54.18 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: 1.12 Total: 24.32 kcal Atomic # 6 Polarization: -70.43 SS G_CDS: 3.11 Total: -67.33 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: 0.24 Total: -41.66 kcal Atomic # 9 Polarization: -4.08 SS G_CDS: 0.78 Total: -3.30 kcal Atomic # 14 Polarization: 37.41 SS G_CDS: 2.03 Total: 39.44 kcal Atomic # 16 Polarization: -4.55 SS G_CDS: -1.09 Total: -5.65 kcal Total: -60.36 6.18 -54.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205968965.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.117 kcal (2) G-P(sol) polarization free energy of solvation -60.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds