Wall clock time and date at job start Tue Mar 31 2020 06:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.76195 * 103.00132 * 2 1 4 4 C 1.38878 * 120.15387 * 0.21222 * 3 2 1 5 5 C 1.38051 * 120.08887 * 180.25053 * 4 3 2 6 6 C 1.38809 * 120.39687 * 359.79231 * 5 4 3 7 7 F 1.35096 * 119.85057 * 180.02562 * 6 5 4 8 8 C 1.38000 * 120.29988 * 359.97438 * 6 5 4 9 9 C 1.39686 * 119.90310 * 0.02562 * 8 6 5 10 10 C 1.47613 * 120.19374 * 179.97438 * 9 8 6 11 11 C 1.39331 * 120.35155 * 65.01769 * 10 9 8 12 12 C 1.37962 * 119.97188 * 179.97438 * 11 10 9 13 13 C 1.39001 * 120.69814 * 359.74549 * 12 11 10 14 14 C 1.36379 * 120.71077 * 0.51964 * 13 12 11 15 15 C 1.40766 * 119.99884 * 359.48513 * 14 13 12 16 16 C 1.40809 * 120.34048 * 180.23640 * 15 14 13 17 17 H 1.07998 * 120.00008 * 150.98123 * 16 15 14 18 18 C 1.40017 * 119.99813 * 330.97725 * 16 15 14 19 19 N 1.30811 * 119.99657 * 161.03448 * 18 16 15 20 20 Si 1.86804 * 120.00132 * 341.03325 * 18 16 15 21 21 H 1.48503 * 109.46775 * 95.44215 * 20 18 16 22 22 H 1.48492 * 109.47004 * 215.44152 * 20 18 16 23 23 H 1.48500 * 109.46808 * 335.44417 * 20 18 16 24 24 H 1.09002 * 109.47125 * 300.00252 * 1 2 3 25 25 H 1.09000 * 109.46889 * 59.99748 * 1 2 3 26 26 H 1.08996 * 109.46910 * 179.97438 * 1 2 3 27 27 H 1.07998 * 119.95437 * 359.97438 * 4 3 2 28 28 H 1.08001 * 119.80036 * 179.76503 * 5 4 3 29 29 H 1.07999 * 120.04948 * 180.02562 * 8 6 5 30 30 H 1.08004 * 120.01383 * 0.02562 * 11 10 9 31 31 H 1.08008 * 119.65039 * 180.02562 * 12 11 10 32 32 H 1.07993 * 119.64395 * 180.27662 * 13 12 11 33 33 H 1.08007 * 119.99780 * 179.76745 * 14 13 12 34 34 H 0.97004 * 119.99650 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1973 2.6667 0.0044 5 6 1.5094 4.0114 -0.0008 6 6 2.8344 4.4249 -0.0062 7 9 3.1273 5.7438 -0.0107 8 6 3.8540 3.4950 -0.0058 9 6 3.5525 2.1310 -0.0005 10 6 4.6380 1.1307 -0.0007 11 6 5.5032 1.0305 1.0868 12 6 6.5148 0.0925 1.0786 13 6 6.6805 -0.7630 -0.0043 14 6 5.8532 -0.6859 -1.0858 15 6 4.8112 0.2603 -1.1088 16 6 3.9498 0.3428 -2.2195 17 1 2.9325 0.6816 -2.0900 18 6 4.4120 -0.0144 -3.4920 19 7 3.5587 -0.2980 -4.4420 20 14 6.2473 -0.0859 -3.8330 21 1 6.7278 -1.4810 -3.6657 22 1 6.5103 0.3649 -5.2232 23 1 6.9625 0.8016 -2.8811 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 0.1639 2.3529 0.0075 28 1 0.7178 4.7461 -0.0011 29 1 4.8835 3.8212 -0.0096 30 1 5.3815 1.6864 1.9362 31 1 7.1823 0.0190 1.9246 32 1 7.4753 -1.4940 0.0092 33 1 5.9947 -1.3539 -1.9226 34 1 3.8789 -0.5451 -5.3237 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205974968.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:03 Heat of formation + Delta-G solvation = -4.211248 kcal Electronic energy + Delta-G solvation = -20079.905258 eV Core-core repulsion = 16982.763545 eV Total energy + Delta-G solvation = -3097.141713 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.068 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.46999 -38.82456 -37.23100 -33.68770 -32.01325 -30.64261 -30.25426 -28.48503 -28.21997 -25.23400 -22.81452 -22.30497 -21.19742 -19.94253 -17.53854 -17.15237 -16.81719 -15.90028 -15.60394 -15.17580 -14.58136 -14.39656 -14.07419 -13.96754 -13.67308 -13.33363 -13.02351 -12.81166 -12.56864 -12.43783 -12.00019 -11.88926 -11.62983 -11.48125 -11.03005 -10.84268 -10.63595 -10.34215 -9.91113 -9.68232 -9.52719 -9.21796 -8.82926 -8.53153 -7.70226 -7.55713 -7.02204 -6.55478 -4.49129 1.51475 1.64231 2.09641 2.52978 2.68403 3.04844 3.08863 3.18748 3.29760 3.93839 3.99218 4.46526 4.69131 5.14921 5.22769 5.34425 5.38487 5.42825 5.57573 5.76255 5.94380 5.98875 6.04941 6.20043 6.27066 6.40758 6.53276 6.54717 6.69540 6.82102 6.91815 7.14804 7.27141 7.36054 7.61237 7.72648 7.85670 8.08168 8.36467 8.63111 8.76223 9.98961 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.013305 B = 0.007473 C = 0.007000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.994316 B = 3745.722524 C = 3998.757742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 S -0.042 6.042 3 C -0.094 4.094 4 C -0.111 4.111 5 C -0.156 4.156 6 C 0.084 3.916 7 F -0.149 7.149 8 C -0.137 4.137 9 C 0.069 3.931 10 C -0.192 4.192 11 C -0.047 4.047 12 C -0.254 4.254 13 C -0.069 4.069 14 C -0.232 4.232 15 C 0.117 3.883 16 C -0.426 4.426 17 H 0.111 0.889 18 C 0.086 3.914 19 N -0.793 5.793 20 Si 0.905 3.095 21 H -0.270 1.270 22 H -0.291 1.291 23 H -0.243 1.243 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.101 0.899 27 H 0.125 0.875 28 H 0.127 0.873 29 H 0.134 0.866 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.489 2.743 5.882 7.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.341 4.341 2 S 0.204 5.796 3 C -0.207 4.207 4 C -0.135 4.135 5 C -0.176 4.176 6 C 0.062 3.938 7 F -0.128 7.128 8 C -0.158 4.158 9 C 0.063 3.937 10 C -0.194 4.194 11 C -0.065 4.065 12 C -0.273 4.273 13 C -0.087 4.087 14 C -0.251 4.251 15 C 0.113 3.887 16 C -0.453 4.453 17 H 0.128 0.872 18 C -0.135 4.135 19 N -0.415 5.415 20 Si 0.732 3.268 21 H -0.196 1.196 22 H -0.218 1.218 23 H -0.166 1.166 24 H 0.092 0.908 25 H 0.098 0.902 26 H 0.120 0.880 27 H 0.143 0.857 28 H 0.145 0.855 29 H 0.152 0.848 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.119 0.881 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.009 1.619 5.607 6.566 hybrid contribution -0.091 1.276 -0.440 1.352 sum -3.099 2.894 5.167 6.684 Atomic orbital electron populations 1.23800 0.99354 1.06354 1.04637 1.86347 1.01050 1.01526 1.90697 1.22153 0.95809 0.97392 1.05378 1.20816 0.98163 0.92027 1.02509 1.20783 0.94530 0.96300 1.06011 1.17531 0.93747 0.77219 1.05314 1.91438 1.94322 1.32685 1.94335 1.21198 0.98807 0.91863 1.03918 1.18128 0.90748 0.91638 0.93184 1.18328 1.00501 1.01245 0.99285 1.20595 0.93709 0.96605 0.95629 1.20215 1.03444 1.03503 1.00126 1.20400 0.97164 0.97142 0.94016 1.20735 1.01800 1.03107 0.99502 1.17533 0.90518 0.88504 0.92159 1.19799 1.00345 1.35063 0.90110 0.87184 1.26248 1.00493 0.90589 0.96138 1.69697 1.37627 1.30194 1.04031 0.86417 0.82933 0.80091 0.77387 1.19564 1.21818 1.16622 0.90803 0.90195 0.88040 0.85689 0.85527 0.84817 0.88740 0.88845 0.89012 0.88132 0.90373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.37 9.15 101.05 0.92 -1.44 16 2 S -0.04 -0.80 18.84 -107.50 -2.03 -2.83 16 3 C -0.09 -1.83 5.11 -38.51 -0.20 -2.02 16 4 C -0.11 -1.84 9.36 -39.41 -0.37 -2.21 16 5 C -0.16 -2.50 10.01 -39.44 -0.39 -2.90 16 6 C 0.08 1.48 7.29 -39.46 -0.29 1.19 16 7 F -0.15 -2.54 17.26 2.25 0.04 -2.50 16 8 C -0.14 -2.62 9.72 -39.13 -0.38 -3.00 16 9 C 0.07 1.44 4.70 -104.70 -0.49 0.95 16 10 C -0.19 -4.31 4.65 -104.24 -0.49 -4.79 16 11 C -0.05 -0.98 9.73 -39.28 -0.38 -1.36 16 12 C -0.25 -5.18 10.03 -39.40 -0.40 -5.58 16 13 C -0.07 -1.47 9.96 -39.97 -0.40 -1.86 16 14 C -0.23 -5.46 7.13 -39.30 -0.28 -5.74 16 15 C 0.12 2.84 4.55 -106.54 -0.49 2.35 16 16 C -0.43 -10.88 8.09 -37.94 -0.31 -11.19 16 17 H 0.11 2.92 5.18 -52.49 -0.27 2.65 16 18 C 0.09 2.17 5.40 -17.32 -0.09 2.08 16 19 N -0.79 -20.27 13.93 55.55 0.77 -19.49 16 20 Si 0.91 20.29 24.52 -169.99 -4.17 16.12 16 21 H -0.27 -5.86 6.69 56.52 0.38 -5.48 16 22 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.24 -5.62 6.88 56.52 0.39 -5.24 16 24 H 0.07 0.87 7.74 -51.92 -0.40 0.47 16 25 H 0.08 1.07 7.76 -51.92 -0.40 0.67 16 26 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.13 1.74 5.88 -52.49 -0.31 1.43 16 28 H 0.13 1.67 8.06 -52.49 -0.42 1.24 16 29 H 0.13 2.42 8.06 -52.49 -0.42 2.00 16 30 H 0.09 1.76 8.06 -52.48 -0.42 1.33 16 31 H 0.09 1.67 8.06 -52.48 -0.42 1.25 16 32 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 33 H 0.10 2.36 4.68 -52.48 -0.25 2.11 16 34 H 0.29 6.65 8.30 -40.82 -0.34 6.31 16 LS Contribution 298.06 15.07 4.49 4.49 Total: -1.00 -26.61 298.06 -8.25 -34.85 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -3.34 Total: 4.89 kcal Atomic # 6 Polarization: -31.52 SS G_CDS: -4.02 Total: -35.54 kcal Atomic # 7 Polarization: -20.27 SS G_CDS: 0.77 Total: -19.49 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 0.04 Total: -2.50 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.17 Total: 16.12 kcal Atomic # 16 Polarization: -0.80 SS G_CDS: -2.03 Total: -2.83 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -26.61 -8.25 -34.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205974968.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.644 kcal (2) G-P(sol) polarization free energy of solvation -26.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds